phf11


Basic Information

Item Value
gene id phf11
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 21743748 ~ 21755526 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817470.1
AAGGGCGGTGAAATAAACGCAAAGAAGGAAGTTGTTTACgatcatactgtatatactgtctGTGACTGTAACAGCTCTGAGTGAAGGTGGACTGCaattaaacactttattttagaCAAAAAGGAGTTCATCTTTCCGTTAACAGGAAGAAATGAGCGACGGTGACAAAGTTTGCTGTGTGCTTTGTCAACGGTCTGAAGAGACGGAGATAACCGGACCGTTATCGACTAATGATGAAGTCACGGCTCATCAGAACTGTTTGtTATTTTCCTCAGGTCTTTATTGCCGGAATTCCCCACAGTTTGACGATCTTTTTGGATTCTTTGTGGAGGATGTGCTGAGTGAGGTGAAACGAGGAAGCAAACTGATATGTAGCTTATGTAAGCTAAAGGGTGCCACTGCTGGGTGTGAAGTCCGACGCTGCAAGAAGTCCTACCACTACCCGTGTGCTGTTCAAGATCATGCAGAGATTGTTGAGGATGCAGACCGGGGGGAATATGGGCTGTACTGCCCCAATCACAGTCCACAAACACAAGAAAACAATGGCTCCATAAACGGAAGTCCCTCTTCCTCCACAAAGTCCAGAACTTCCAAAACTCCCAGTGAAGCCGGATCATCTAAGAAATATTGCCTTGCCTGTAAGAAGGTAGAAGGAAATATCAGCTTGGAAAGTTCATATTCTAGCATTGTTATGTTATATTGTGACAAACATGCATCTCATAGGAGGACCACCAGCGGTGGTTCTACAGCTGCCGGACAATCATCCGTGTACAGCAGTGACTCCAACTCATCCAGCAGTGCGGCGCGTTCATCTTCCAAGAGACCATTGAATTCCACTAAGAAAACGGAAGAGACCCCATCTAAACGTAAATCTAAAGGCTTTAAAAGGATCGTATCGGATGATTCCAATTCAGGTGATAATGTACTTGATCCAGAAATGGAAATGTTTGCCCCTTTAGAGATGGATTTAGACGAAAGTGCCAACTCTGTTCCAGAGCCCCAGTTGATCAGAAAAGACACTGAGAGTCCCACTGGGTCCGCCTCAGGAAGTCACCTGGAGGAAGAGAACAAAGATGACcataaagaagaagatgaaacaTTCATACATTCAGATGTTGAATCAGAGAGTCTGCTACTTCCTTTGTCTCGGCCGTGTTTAGTGACAGCCTCAACTCAGACTGCATCGACCTTACTTCCCGCTGTTTTGTTGAAGACAGAGGCACAGAAGGAAGATGAAGAGCCGAGCACCTACTCCACCAGCTTCTGGAAAAACTGCAACATGGCAGGATGCACACAGGCCATCTTTACTGGTTTCATTAATGAGATGAACGATATCTCCAGCAGAATCCAGGCAGACCAGGCCAGCCAGGAGGattgtGATATTGCACTAAGAGTGATTTTGGCTTCTAGGAAACTGGCGGAGCTCGTGGCCAAGCAGAAAGATGagttagAAAGGAAACAAAAGGAACTGCAAAAGGCGGCAGCAGCTATGGAGGAGGCCGCCTCGGCACTGAGGAGATGAGTCCATCAGCAGCTCCCGTAACAACATGGATGTCAGTGTTTACTGTTTTACGGTTATTCTTATTTGTCAGTGATTCCCACTGTTGGTTGTATTTCAAATTAATAACATTGGAATCATCatgacatagtatagtatgacattttatacaacCAGTATTTGTATGTATAGTTGGATGTGGATGTGGAAACCCAAAACTGTAACAGTATTTGGCATTGATAATTCAAAAAGCACTGAgagttaaaatgtttaattcttACAACATGATCTAAGATTTCAGCCTGTGATAATGATATTTTTAGAATTAAGTTGTAAATGGTGTTCCATTTAGAAAATATGTCACACAGGAATGTCAaattacatgacattacattttCACTCAACAAAAAGgggtttaaatttaaaaacctGTACTGAACATGAACAATTGGAAAGAATAGTCTTGAAAATGTTCCTCATCCAACACTAGCTGAGTTGAGCTTGGATGTTTTTTACCATTAGCTCTTTTTTTCCCAGGTAGGCTACTTTAAGATATTGTCCTGCAGTTGAAATACCAAAACCGTATTGGATTTAAGTCTTGATTTAACAAGTTTACTATAAATAGTTCAAATTAGTAATCAAAGTACAGAAGAGCTGAAATGATGCAGCAGGTTACAGTTGAGTATTTGCAAGGAATTGTCTACAGCCTGATCGTACAGTGGAGTCCAAAGTCTGTTTTGTCCACATCGTTATCAAAGAGGAATTCATGTTTAGTCTTCTACATTTTTATCCGTTAGATTAAAATTGATCTTTTACATGAAACAGGTTGGTGTATATTACTTTGCCTTGAacctttttataaaatgtttgctCAAGTCACAtatatttctgtcaaataacTCATGCCCCTAATACACTGTGAATCGATCCAATATTTGAACTATTCTTACCAGTTATTGACTAAATGTAGCCCTTTgtgcatttttgttttcatttaaccaGGTTATTAAAATCTTTTTCAAGGAA

Function

NR:

description
uncharacterized protein LOC110501296 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817470.1 True 2524 mRNA 0.41 18 21743748 21755526

Neighbor

gene id symbol gene type direction distance location
mcf2lb LOC100707473,LOC101480000,LOC102199374,LOC103372300 coding upstream 1513 21692221 ~ 21742235 (+)
arhgef7a arhgef7,LOC103372297,LOC102301399,LOC106582025 coding upstream 193713 21518502 ~ 21550035 (+)
mrpl30 mrpl30,LOC102785580 coding upstream 272080 21468365 ~ 21471668 (+)
si:dkey-4e7.3 LOC103368133 coding upstream 336847 21398530 ~ 21406901 (+)
inpp4aa inpp4a,LOC106581879 coding upstream 357192 21369820 ~ 21386556 (+)
trim13 trim13 coding downstream 37748 21793274 ~ 21809912 (+)
rnaseh2b rnaseh2b coding downstream 93125 21848651 ~ 21854501 (+)
LOC120570102 LOC103362603,LOC104951867 coding downstream 105734 21861260 ~ 21863025 (+)
nr0b1 nr0b1,LOC103362601 coding downstream 128055 21883581 ~ 21885428 (+)
cmss1 cmss1 coding downstream 471506 22227032 ~ 22268448 (+)
G126000 NA non-coding upstream 261723 21479929 ~ 21482025 (+)
G125994 txndc9 non-coding upstream 266998 21473163 ~ 21476750 (+)
G125992 mitd1,LOC102785871 non-coding upstream 275616 21465910 ~ 21468132 (+)
G125958 NA non-coding upstream 333783 21409192 ~ 21409965 (+)
G125957 NA non-coding upstream 334635 21407513 ~ 21409113 (+)
G126160 LOC103371890 non-coding downstream 595501 22351027 ~ 22352358 (+)
G126162 LOC103371890 non-coding downstream 600568 22356094 ~ 22357669 (+)
G126169 NA non-coding downstream 630003 22385529 ~ 22385754 (+)
G126175 NA non-coding downstream 689802 22445328 ~ 22446121 (+)
G126246 NA non-coding downstream 779605 22535131 ~ 22537513 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other upstream 51944 21655126 ~ 21691804 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other upstream 108991 21619348 ~ 21634757 (+)
G125757 rpl24 other upstream 878306 20860152 ~ 20865442 (+)
mpc2b mpc2 other upstream 884832 20853089 ~ 20858916 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other upstream 1222474 20492178 ~ 20521274 (+)
fbxl3a fbxl3 other downstream 975397 22730923 ~ 22738653 (+)
G126363 lmo7 other downstream 1051667 22807193 ~ 22815102 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other downstream 1223076 22978602 ~ 23100083 (+)
cwc22 cwc22 other downstream 2428423 24183949 ~ 24199835 (+)
sestd1 sestd1 other downstream 2521631 24277157 ~ 24298218 (+)

Expression


Co-expression Network