commd6 (commd6,LOC102792157)


Basic Information

Item Value
gene id commd6
gene name commd6,LOC102792157
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22850941 ~ 22855543 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817698.1
TTACGATGGTTACGATCCGCCCGTAAACAGATAGAAGAAGATTCACTGCAAAGACAGAAGGTTCTCTGCCAATAAAGTCGGTCTTATTATACATCCGTCATAAAGTCACCCAATTTGTCACTAGGAggtttgaaaataataataatatagatttgatatataagtcgctaAAGGGGTCTTAAGCGTTGCCAAGCGAGCAAGTCCCTAAATAGAGAACACTGCCAAGCCAGACTGAGAGAAGATGCCAGCAGCAGAGGAATCGCATGGTGTCAACAAAGTTGTGGACAACATCTGTAAGCTTTCTCCAGATCTTTTGGCTGAAGCATGTCAGCACATTCTGATTTATCTTCAAGGACAAACTAAAGGAGTAGATTCAGCTGAAATTTCTCATAAATTTCAAAGAGCTGGAGTCAGACTTGACCATGAAGCTCTACAGAACATTATCAGATTTCTCCTGTTAACATTCAGGTCAGCTGGGAAGAGCAACTTCTCTGGGGATGACCTTGTGTCGAGGCTGGAGGAAGGCAGTAATAAGTGGCCCAAAGCTTCCCTTCAGGTGTTGCACAGGTTGTGGAGTGAACATGGTGCATTAGTCCATGCTCAGCAGGAGGTCCAGGCCATGCTCAGCATCAGCCAGTTAGTGGACATGCAGTGGAAGCTCGGCATGGCCGTGAGCTCCGACACCTGCCGATCTCTCAACTCCCCATACGTGTCTCTACTGCTAAAGATCGTTGAGCCCTCTGGGCAGATTTGTCAGAGGTCTTTTGAAATGACCATTCCACAGTTCCAGAACTTTCACAAGCAGTTCAAGGAGATGGCAGCCGTTATGGAGACTGTGTGATGGTTGCAAGTTCACCTAAGTGCTTGTCGAAATGACACTCCAGTTAACTTGTTACCCAACCGAAGAACTGCTTGACACAGGtgtgtgtcttctggctgttaAACATGTGGATACCAATTATTGCAAATGTCAATTGTCTGCTTTtcgctttgcttttttttttttttttactttacagattGCATAAGCTCCTAAATGATTTACTGAACAGTCCTGGGGCTTTTTGTTAACTTCTGAATTATGAGGACTTTTGCCATGTTTTTTCCCCTGTTAATACTGAAATGTATACTGTGTGGTTTGATGCCACACAACAATGATGCAATAACAATCATTAAATGTAAACCTCCATTG

Function

symbol description
commd6 Predicted to enable NF-kappaB binding activity. Predicted to be involved in negative regulation of NF-kappaB transcription factor activity. Orthologous to human COMMD6 (COMM domain containing 6).

NR:

description
COMM domain-containing protein 6 isoform X1

GO: NA

KEGG:

id description
K22562 COMMD6; COMM domain containing 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817698.1 True 1192 mRNA 0.43 7 22850941 22855543

Neighbor

gene id symbol gene type direction distance location
kctd12.1 kctd12 coding upstream 96337 22753105 ~ 22754604 (+)
zgc:162944 LOC104958623,LOC102208337,LOC101482774 coding upstream 103423 22744460 ~ 22747518 (+)
mycbp2 mycbp2,LOC102794783 coding upstream 120518 22668306 ~ 22730423 (+)
tfg tfg coding upstream 500882 22332905 ~ 22350059 (+)
jagn1a LOC104964438,LOC103371888,LOC106923881,LOC103134718 coding upstream 518140 22330500 ~ 22332801 (+)
tbc1d4 tbc1d4 coding downstream 1407 22856950 ~ 22887388 (+)
klf12b klf12 coding downstream 58658 22914201 ~ 22960754 (+)
clybl clybl coding downstream 304422 23159965 ~ 23222241 (+)
zic2a zic2 coding downstream 388089 23243632 ~ 23247660 (+)
itgbl1 itgbl1,LOC102787049 coding downstream 639398 23494941 ~ 23538664 (+)
G126358 NA non-coding upstream 52629 22797901 ~ 22798312 (+)
G126352 NA non-coding upstream 80021 22770710 ~ 22770920 (+)
G126290 NA non-coding upstream 192049 22657517 ~ 22658892 (+)
G126280 LOC104958628,LOC108232414,LOC106098708 non-coding upstream 211179 22639470 ~ 22639762 (+)
G126267 NA non-coding upstream 230333 22616311 ~ 22620608 (+)
LOC120569671 NA non-coding downstream 111083 22966626 ~ 22969170 (+)
G126439 zic5,LOC102789084 non-coding downstream 377324 23232867 ~ 23236823 (+)
G126447 NA non-coding downstream 497034 23352577 ~ 23352820 (+)
G126463 nalcn non-coding downstream 544348 23399891 ~ 23400386 (+)
G126515 NA non-coding downstream 848842 23704385 ~ 23704642 (+)
G126363 lmo7 other upstream 35839 22807193 ~ 22815102 (+)
fbxl3a fbxl3 other upstream 112288 22730923 ~ 22738653 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other upstream 1159137 21655126 ~ 21691804 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other upstream 1216184 21619348 ~ 21634757 (+)
G125757 rpl24 other upstream 1985499 20860152 ~ 20865442 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other downstream 123059 22978602 ~ 23100083 (+)
cwc22 cwc22 other downstream 1328406 24183949 ~ 24199835 (+)
sestd1 sestd1 other downstream 1421614 24277157 ~ 24298218 (+)
fzd5 LOC104950716,LOC108238837 other downstream 1516928 24372471 ~ 24394985 (+)
cacnb4a cacnb4 other downstream 2774564 25630107 ~ 25664427 (+)

Expression


Co-expression Network