gabpa (gabpa)


Basic Information

Item Value
gene id gabpa
gene name gabpa
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20641212 ~ 20649166 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817758.1
ctgagtgtgtggtgtgttgacCAAAAACTTGCATGATACGACCCGACTGTGTGAATTTTAGCAGATAATCTACCATAGTTGAACATAATCCAACATCTTTCGAGGCCAGAAGTTTAAGAGTTTGGCTCTCTGCATAGAACAGAATGTCTAAAAGTGAACCAGAAGAGATGATAGAGATCGAGATCGATGAACGGGAGAAACAGACATGCCTGGAGGAAGGGGTTGAGGAGCAGACCATCACTGCATCAGATTTGATTCAGCAAGATATTGACATCAATGAGCCCATTGGCAATTTGAAGAAGCTCTTGGAGCCTCGTATCCAAATGTCACTGGATGCATATGAGATCTGCCTGCAGGACATTCAGCTTCACCCTGACCACAGCCTCTTCGATCAGGGAGTAAAGACAGATGGCACAGTGCAGCTGAGCCTGCAGATAATAACCAAGCCAGGTGAGGAGAAGTTGAACATTTTGGAAATTGTGAAGCCTGTAGAAACGGTAGAGGTGGTGATTGATCCAGATGCAGCAGGAGAAGAGGGAGGTCTGGTGGAGGAGGGTCAACTCATTGCCGTGGAGCGATCTGGCCTGTCTGATGAGACGTCGGAGCAGGTCACGCGCTGGGCTGCAGCACTTGAAGGCTACCGCAAAGAGCAGGTTCGCCTGGGCATACCATATGatccTGTGCTCTGGTCAGCTGACCAGGTGATCCACTGGGCTGTGTGGGTAATGAAGGAGTTTAACATTGATGAGATGGAAATAGGCAGCATTCACATCCCAGGTCGAGATCTCTGCTCATTCAGCCAGGAAGAGTTCCTTCAGAAAGTGCCTAATGGAGAGATACTCTGGAGTCACCTGGAACTCCTACGCAAATATGTGTTGGCAAGCCAGGACCAGTCTGGAGGGGATGCTACTGTCACCATTGATCAGCCTGTGCACATAATCCCAACTCAAGTGAGCACACCCACTGCCATAAAGGTGTTGAAGCAGAACCGTGGCCCCAGGACTCCCCGAATTTCAGGGGGAGAGGAGCGCAGCTCACCTGGCAACCGCACAGGCAACAACGGTCAGATCCAGTTGTGGCAGttcctgctggagctgctgacAGACAAGGATGCAAGAGACTGCATCTGCTGGGTGGGTGAGGAGGGCGAGTTCAAACTCAACCAGCCCGAGCTTGTGGCGCAGAAATGGGGCCAGCGCAAGAACAAGCCTACAATGAACTATGAGAAACTCAGCAGAGCCCTcagGTATTACTACGACGGAGACATGATCAGCAAGGTGCAGGGCAAGCGCTTTGTCTACAAGTTTGTGTGCGACCTGAGAACTCTGATTGGCTACAGTGCTGCTGAGCTCAACAACCTGGTGACCGAGTGTGAACAGAAGAAACTGGCTCGCATGCAGATGCACGGCATCGGTCAGCCCATCACTACAGTGACGCTGGCCACCACCACACTAGACAAAGACAGTTGAAGGAGGATGCATTGAAGCGCCCTCCAGCTGCCAAAGTTTGCTCTCAACCGCTGATTGGAAATCAAAtcaactttcttcttttttgacaCAACTGTGTTTATCAGGCACAGAAATGCAAGGCTGATCAGTGTGGATTAACAACTTTGTTAttgtctttacagtttgaaGTTAGACTGAGGCAGGTTTATCTTTTCTGTAACTCTAACCAAGAGAATTGTGTTCTGGATGAGGAGGTGAATGTCTGTGTGATTACTGAGAAATgctgttgtgtgcatgtgactGAATGCTTTAAGGTGAGACTGAGTTATGAGCTTTGTGTAAGGAGTTCCCTGTCTGTAGTTTAGGATCATTTCCACTGTATATACTGGTACTTAATGTTTTTGATAGCCACAAGGACAAGtgtattttcatattttccATTTATACAGGAcctgttttgtattttatttagtgtttgTTCCCTAAATCGCTGGACCCTTTTTTGTCCACTAGAGGGAATAAAGTGGCAAGCATTTTTcttaa
>XM_039817759.1
GTCAGTTTGTCGTGCTTACACTTCCCGCTATTTTGTGGCTCACTAAGGCTAGCTGTTGTTGATTTCTGAGCTTAGTGGCAGTAGGCCGCCTACCTTCAAGCTCGCAGAGCATTAAGCTAGGCAACTTCCACTAAAGCTGCTCCCGATGCTATCTCGTTAGCTATCTGGAAAAGTGAAACATTAGCTTTTTTCCAGGACAAACTCAGTTAGCTATATCGATTCTGCGTTAGCTGGGTTGCTAACAGCAGTGGAGTGGAGAGACTGCCTGCTGCTACCGATCACCGTCCAGCCTCAAACACACATTTGGCTCTCTGCATAGAACAGAATGTCTAAAAGTGAACCAGAAGAGATGATAGAGATCGAGATCGATGAACGGGAGAAACAGACATGCCTGGAGGAAGGGGTTGAGGAGCAGACCATCACTGCATCAGATTTGATTCAGCAAGATATTGACATCAATGAGCCCATTGGCAATTTGAAGAAGCTCTTGGAGCCTCGTATCCAAATGTCACTGGATGCATATGAGATCTGCCTGCAGGACATTCAGCTTCACCCTGACCACAGCCTCTTCGATCAGGGAGTAAAGACAGATGGCACAGTGCAGCTGAGCCTGCAGATAATAACCAAGCCAGGTGAGGAGAAGTTGAACATTTTGGAAATTGTGAAGCCTGTAGAAACGGTAGAGGTGGTGATTGATCCAGATGCAGCAGGAGAAGAGGGAGGTCTGGTGGAGGAGGGTCAACTCATTGCCGTGGAGCGATCTGGCCTGTCTGATGAGACGTCGGAGCAGGTCACGCGCTGGGCTGCAGCACTTGAAGGCTACCGCAAAGAGCAGGTTCGCCTGGGCATACCATATGatccTGTGCTCTGGTCAGCTGACCAGGTGATCCACTGGGCTGTGTGGGTAATGAAGGAGTTTAACATTGATGAGATGGAAATAGGCAGCATTCACATCCCAGGTCGAGATCTCTGCTCATTCAGCCAGGAAGAGTTCCTTCAGAAAGTGCCTAATGGAGAGATACTCTGGAGTCACCTGGAACTCCTACGCAAATATGTGTTGGCAAGCCAGGACCAGTCTGGAGGGGATGCTACTGTCACCATTGATCAGCCTGTGCACATAATCCCAACTCAAGTGAGCACACCCACTGCCATAAAGGTGTTGAAGCAGAACCGTGGCCCCAGGACTCCCCGAATTTCAGGGGGAGAGGAGCGCAGCTCACCTGGCAACCGCACAGGCAACAACGGTCAGATCCAGTTGTGGCAGttcctgctggagctgctgacAGACAAGGATGCAAGAGACTGCATCTGCTGGGTGGGTGAGGAGGGCGAGTTCAAACTCAACCAGCCCGAGCTTGTGGCGCAGAAATGGGGCCAGCGCAAGAACAAGCCTACAATGAACTATGAGAAACTCAGCAGAGCCCTcagGTATTACTACGACGGAGACATGATCAGCAAGGTGCAGGGCAAGCGCTTTGTCTACAAGTTTGTGTGCGACCTGAGAACTCTGATTGGCTACAGTGCTGCTGAGCTCAACAACCTGGTGACCGAGTGTGAACAGAAGAAACTGGCTCGCATGCAGATGCACGGCATCGGTCAGCCCATCACTACAGTGACGCTGGCCACCACCACACTAGACAAAGACAGTTGAAGGAGGATGCATTGAAGCGCCCTCCAGCTGCCAAAGTTTGCTCTCAACCGCTGATTGGAAATCAAAtcaactttcttcttttttgacaCAACTGTGTTTATCAGGCACAGAAATGCAAGGCTGATCAGTGTGGATTAACAACTTTGTTAttgtctttacagtttgaaGTTAGACTGAGGCAGGTTTATCTTTTCTGTAACTCTAACCAAGAGAATTGTGTTCTGGATGAGGAGGTGAATGTCTGTGTGATTACTGAGAAATgctgttgtgtgcatgtgactGAATGCTTTAAGGTGAGACTGAGTTATGAGCTTTGTGTAAGGAGTTCCCTGTCTGTAGTTTAGGATCATTTCCACTGTATATACTGGTACTTAATGTTTTTGATAGCCACAAGGACAAGtgtattttcatattttccATTTATACAGGAcctgttttgtattttatttagtgtttgTTCCCTAAATCGCTGGACCCTTTTTTGTCCACTAGAGGGAATAAAGTGGCAAGCATTTTTcttaa

Function

symbol description
gabpa Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell. Orthologous to human GABPA (GA binding protein transcription factor subunit alpha).

NR:

description
PREDICTED: GA-binding protein alpha chain

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09441 GABPA; GA-binding protein transcription factor, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817758.1 False 1991 mRNA 0.48 10 20641212 20649166
XM_039817759.1 True 2173 mRNA 0.48 10 20641400 20649166

Neighbor

gene id symbol gene type direction distance location
sik1 LOC103352856,LOC102193135,LOC102291704,LOC101480385 coding upstream 86858 20544377 ~ 20554354 (+)
ing1 ing1 coding upstream 150703 20485226 ~ 20490509 (+)
naxd naxd,LOC102782328 coding upstream 156151 20478711 ~ 20485061 (+)
col4a2 col4a2,LOC107557913 coding upstream 169688 20389518 ~ 20471524 (+)
tnfsf13b NA coding upstream 492162 20145083 ~ 20149050 (+)
piga piga coding downstream 50065 20699231 ~ 20706004 (+)
asb11 LOC104950685,LOC102779537,LOC102313943 coding downstream 58075 20707241 ~ 20710700 (+)
xk xk coding downstream 75694 20724860 ~ 20734285 (+)
sytl5 sytl5 coding downstream 89626 20738792 ~ 20774655 (+)
otc otc coding downstream 160152 20809318 ~ 20813381 (+)
G125662 NA non-coding upstream 10018 20594040 ~ 20631194 (+)
G125668 NA non-coding upstream 29548 20603691 ~ 20611664 (+)
G125626 NA non-coding upstream 149053 20491661 ~ 20492159 (+)
G125577 NA non-coding upstream 310553 20330387 ~ 20330659 (+)
G125547 NA non-coding upstream 372084 20228728 ~ 20269128 (+)
G125675 LOC106940919,LOC102232862,LOC103459816 non-coding downstream 107 20649273 ~ 20651869 (+)
LOC120570651 NA non-coding downstream 18514 20667680 ~ 20679076 (+)
G125702 NA non-coding downstream 37531 20686697 ~ 20687047 (+)
G125718 NA non-coding downstream 63240 20712406 ~ 20713194 (+)
G125738 NA non-coding downstream 145879 20795045 ~ 20825545 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other upstream 119938 20492178 ~ 20521274 (+)
myo16 myo16,LOC103372229 other upstream 375622 20153855 ~ 20265590 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other upstream 647888 19968360 ~ 19993324 (+)
igsf3 LOC103352919,LOC104967650 other upstream 1181938 19388015 ~ 19459274 (+)
tmsb4x NA other upstream 1550427 19089418 ~ 19090785 (+)
mpc2b mpc2 other downstream 203923 20853089 ~ 20858916 (+)
G125757 rpl24 other downstream 210986 20860152 ~ 20865442 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other downstream 970182 21619348 ~ 21634757 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other downstream 1005960 21655126 ~ 21691804 (+)
fbxl3a fbxl3 other downstream 2081757 22730923 ~ 22738653 (+)

Expression


Co-expression Network