tfdp1a (tfdp1)


Basic Information

Item Value
gene id tfdp1a
gene name tfdp1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20996513 ~ 21007034 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817774.1
CTTTGCTTTCGTCTCATCGATGCTGTCCAATCAGACAACGCTAAAGCGAGACACCGCCAAGATCAGATTGTGAGACGCGCTGCTGTAGCAAAGCTAGCAGAGAGTGGATAGAAAAGGCTAACAAACAAGTTGCTAACTTGTGAAGTGCAGCGGGGTCTGAGAAGTGATACATAgaagaacattttctttttagccTGAAGCTCAACTCCTGCGGTCCTTTGGGATCATGGCTAAAGATGCTGGTCTGATAGAAACAAACGGAGAGCTGAAGGTTTTCATCGATCAGAATCTGAGCCCTAGCAAAGGTGTACTATCTTTGGTTACTGTCCAGCCTACAGCTGCCCCTGTGGCCAAACAGCTACTACCCAAAACTCTTGGGCCATCCAATGTGAACATTGCTGCACACATGCAACATGTGCCACACATGGTGATAGGAACACCCCAGAGACCTACAGTATCCAATACCATTTTGGTAAACAGTCCACATACACCCAGTTCCCAGTTCCTCACTCAGAGTCAGCCATCAGACGCCTCTCCGTGGTCATCAGGAAAACGTGGtaagaaaggggaaaaaaacggGAAGGGCTTGAGGCATTTCTCCATGAAAGTGTGTGAGAAGGTGCAGAAGAAAGGAGTAACCACCTACAATGAAGTGGCAGATGAACTGGTTGCAGAATTCAGCTCTGCAGAGAGCCACATGTCACCCAATGACGCAcaTGTGTATGACCAGAAGAACATTCGGCGGCGTGTGTACGATGCACTTAATGTGCTTATGGCCATGAACATTATCTctaaagagaagaaagaaatcaAATGGATTGGCCTTCCCACCAACTCAGCGCAAGAGTGCCAAAACCTAGAGGTGGAGAGACAAAGGCGGTTGGAGAGGATTAAGCAGAAACAATCACAGCTTCAGGAGCTCATACTGCAGCAAATAGCTTTTAAGAACCTGGTTCAAcggaacagacagacagagcagcaggcaaACAGACCTCCACCTCCCAACTCCATCATCCACCTCCCCTTTATTATTGTCAACACCAGCAAGAAAACTGTCATTGACTGCAGCATCTCGAACGACAAGTTCGAGTATTTGTTCAATTTTGACAGCATGTTTGAGATCCACGATGACATTGAGGTGCTGAAACGTATGGGCATGGCCTGTGGTTTGGAGGTGGGAAAGTGTTCTCCAGAAGATCTGAAGGTTGCACGTAGCCTGGTGCCCAAAGCTCTGGAGCCATACGTTATAGagaTGGCAAAGGGTCCCATCAGTAACGTCTACATCACTGGAGGTTCCTCAGCAAATGGAGCCCGTTACCCTGCAAGCAGTGATGGCTGCACTGACGGCACCATGGCCTCCAGCTCGAATGACTCTCACTACAGCGGCTCTCGTGTGGAGACTCCAGTGTCTTATATGGGGGATGATGATGACGAGGATGAGTATGATGAGAACGATGACGAAGACTAA
>XM_039817775.1
GACGTGCTCGGTACCTGAAGGGTCTGAGAAGTGATACATAgaagaacattttctttttagccTGAAGCTCAACTCCTGCGGTCCTTTGGGATCATGGCTAAAGATGCTGGTCTGATAGAAACAAACGGAGAGCTGAAGGTTTTCATCGATCAGAATCTGAGCCCTAGCAAAGGTGTACTATCTTTGGTTACTGTCCAGCCTACAGCTGCCCCTGTGGCCAAACAGCTACTACCCAAAACTCTTGGGCCATCCAATGTGAACATTGCTGCACACATGCAACATGTGCCACACATGGTGATAGGAACACCCCAGAGACCTACAGTATCCAATACCATTTTGGTAAACAGTCCACATACACCCAGTTCCCAGTTCCTCACTCAGAGTCAGCCATCAGACGCCTCTCCGTGGTCATCAGGAAAACGTGGtaagaaaggggaaaaaaacggGAAGGGCTTGAGGCATTTCTCCATGAAAGTGTGTGAGAAGGTGCAGAAGAAAGGAGTAACCACCTACAATGAAGTGGCAGATGAACTGGTTGCAGAATTCAGCTCTGCAGAGAGCCACATGTCACCCAATGACGCAcaTGTGTATGACCAGAAGAACATTCGGCGGCGTGTGTACGATGCACTTAATGTGCTTATGGCCATGAACATTATCTctaaagagaagaaagaaatcaAATGGATTGGCCTTCCCACCAACTCAGCGCAAGAGTGCCAAAACCTAGAGGTGGAGAGACAAAGGCGGTTGGAGAGGATTAAGCAGAAACAATCACAGCTTCAGGAGCTCATACTGCAGCAAATAGCTTTTAAGAACCTGGTTCAAcggaacagacagacagagcagcaggcaaACAGACCTCCACCTCCCAACTCCATCATCCACCTCCCCTTTATTATTGTCAACACCAGCAAGAAAACTGTCATTGACTGCAGCATCTCGAACGACAAGTTCGAGTATTTGTTCAATTTTGACAGCATGTTTGAGATCCACGATGACATTGAGGTGCTGAAACGTATGGGCATGGCCTGTGGTTTGGAGGTGGGAAAGTGTTCTCCAGAAGATCTGAAGGTTGCACGTAGCCTGGTGCCCAAAGCTCTGGAGCCATACGTTATAGagaTGGCAAAGGGTCCCATCAGTAACGTCTACATCACTGGAGGTTCCTCAGCAAATGGAGCCCGTTACCCTGCAAGCAGTGATGGCTGCACTGACGGCACCATGGCCTCCAGCTCGAATGACTCTCACTACAGCGGCTCTCGTGTGGAGACTCCAGTGTCTTATATGGGGGATGATGATGACGAGGATGAGTATGATGAGAACGATGACGAAGACTAA
>XM_039817776.1
GCTTTCGTCGTATAGGGTGAATGGTGTTACTACCGCATGCAACATTAATATCTGTAACCATATTGTGCTATCAATTAAGTCACATTAGTAGTTTTGGGCTAGAGTGATTACGTTAGCATGTTTGCGTGACCTGTAGCAGAAGTTCGACGATGCCTCTCCTCCGGACGTGCTCGGGGTCTGAGAAGTGATACATAgaagaacattttctttttagccTGAAGCTCAACTCCTGCGGTCCTTTGGGATCATGGCTAAAGATGCTGGTCTGATAGAAACAAACGGAGAGCTGAAGGTTTTCATCGATCAGAATCTGAGCCCTAGCAAAGGTGTACTATCTTTGGTTACTGTCCAGCCTACAGCTGCCCCTGTGGCCAAACAGCTACTACCCAAAACTCTTGGGCCATCCAATGTGAACATTGCTGCACACATGCAACATGTGCCACACATGGTGATAGGAACACCCCAGAGACCTACAGTATCCAATACCATTTTGGTAAACAGTCCACATACACCCAGTTCCCAGTTCCTCACTCAGAGTCAGCCATCAGACGCCTCTCCGTGGTCATCAGGAAAACGTGGtaagaaaggggaaaaaaacggGAAGGGCTTGAGGCATTTCTCCATGAAAGTGTGTGAGAAGGTGCAGAAGAAAGGAGTAACCACCTACAATGAAGTGGCAGATGAACTGGTTGCAGAATTCAGCTCTGCAGAGAGCCACATGTCACCCAATGACGCAcaTGTGTATGACCAGAAGAACATTCGGCGGCGTGTGTACGATGCACTTAATGTGCTTATGGCCATGAACATTATCTctaaagagaagaaagaaatcaAATGGATTGGCCTTCCCACCAACTCAGCGCAAGAGTGCCAAAACCTAGAGGTGGAGAGACAAAGGCGGTTGGAGAGGATTAAGCAGAAACAATCACAGCTTCAGGAGCTCATACTGCAGCAAATAGCTTTTAAGAACCTGGTTCAAcggaacagacagacagagcagcaggcaaACAGACCTCCACCTCCCAACTCCATCATCCACCTCCCCTTTATTATTGTCAACACCAGCAAGAAAACTGTCATTGACTGCAGCATCTCGAACGACAAGTTCGAGTATTTGTTCAATTTTGACAGCATGTTTGAGATCCACGATGACATTGAGGTGCTGAAACGTATGGGCATGGCCTGTGGTTTGGAGGTGGGAAAGTGTTCTCCAGAAGATCTGAAGGTTGCACGTAGCCTGGTGCCCAAAGCTCTGGAGCCATACGTTATAGagaTGGCAAAGGGTCCCATCAGTAACGTCTACATCACTGGAGGTTCCTCAGCAAATGGAGCCCGTTACCCTGCAAGCAGTGATGGCTGCACTGACGGCACCATGGCCTCCAGCTCGAATGACTCTCACTACAGCGGCTCTCGTGTGGAGACTCCAGTGTCTTATATGGGGGATGATGATGACGAGGATGAGTATGATGAGAACGATGACGAAGACTAA
>XM_039817777.1
ACCAAACAATCGCTTAATTGGGTCTGAGAAGTGATACATAgaagaacattttctttttagccTGAAGCTCAACTCCTGCGGTCCTTTGGGATCATGGCTAAAGATGCTGGTCTGATAGAAACAAACGGAGAGCTGAAGGTTTTCATCGATCAGAATCTGAGCCCTAGCAAAGGTGTACTATCTTTGGTTACTGTCCAGCCTACAGCTGCCCCTGTGGCCAAACAGCTACTACCCAAAACTCTTGGGCCATCCAATGTGAACATTGCTGCACACATGCAACATGTGCCACACATGGTGATAGGAACACCCCAGAGACCTACAGTATCCAATACCATTTTGGTAAACAGTCCACATACACCCAGTTCCCAGTTCCTCACTCAGAGTCAGCCATCAGACGCCTCTCCGTGGTCATCAGGAAAACGTGGtaagaaaggggaaaaaaacggGAAGGGCTTGAGGCATTTCTCCATGAAAGTGTGTGAGAAGGTGCAGAAGAAAGGAGTAACCACCTACAATGAAGTGGCAGATGAACTGGTTGCAGAATTCAGCTCTGCAGAGAGCCACATGTCACCCAATGACGCAcaTGTGTATGACCAGAAGAACATTCGGCGGCGTGTGTACGATGCACTTAATGTGCTTATGGCCATGAACATTATCTctaaagagaagaaagaaatcaAATGGATTGGCCTTCCCACCAACTCAGCGCAAGAGTGCCAAAACCTAGAGGTGGAGAGACAAAGGCGGTTGGAGAGGATTAAGCAGAAACAATCACAGCTTCAGGAGCTCATACTGCAGCAAATAGCTTTTAAGAACCTGGTTCAAcggaacagacagacagagcagcaggcaaACAGACCTCCACCTCCCAACTCCATCATCCACCTCCCCTTTATTATTGTCAACACCAGCAAGAAAACTGTCATTGACTGCAGCATCTCGAACGACAAGTTCGAGTATTTGTTCAATTTTGACAGCATGTTTGAGATCCACGATGACATTGAGGTGCTGAAACGTATGGGCATGGCCTGTGGTTTGGAGGTGGGAAAGTGTTCTCCAGAAGATCTGAAGGTTGCACGTAGCCTGGTGCCCAAAGCTCTGGAGCCATACGTTATAGagaTGGCAAAGGGTCCCATCAGTAACGTCTACATCACTGGAGGTTCCTCAGCAAATGGAGCCCGTTACCCTGCAAGCAGTGATGGCTGCACTGACGGCACCATGGCCTCCAGCTCGAATGACTCTCACTACAGCGGCTCTCGTGTGGAGACTCCAGTGTCTTATATGGGGGATGATGATGACGAGGATGAGTATGATGAGAACGATGACGAAGACTAA
>XM_039817778.1
TTTGCTTTCGTCTCATCGATGCTGTCCAATCAGACAACGCTAAAGCGAGACACCGCCAAGATCAGATTGTGAGACGCGCTGCTGTAGCAAAGCTAGCAGAGAGTGGATAGAAAAGGCTAACAAACAAGTTGCTAACTTGTGAAGTGCAGCGGGATTTagacctcctcttcctccattcTTAAATGCCAACAACAACAGCCGTCGAAGAAACAGGAGCGTGCACTCGGGTCTGAGAAGTGATACATAgaagaacattttctttttagccTGAAGCTCAACTCCTGCGGTCCTTTGGGATCATGGCTAAAGATGCTGGTCTGATAGAAACAAACGGAGAGCTGAAGGTTTTCATCGATCAGAATCTGAGCCCTAGCAAAGGTGTACTATCTTTGGTTACTGTCCAGCCTACAGCTGCCCCTGTGGCCAAACAGCTACTACCCAAAACTCTTGGGCCATCCAATGTGAACATTGCTGCACACATGCAACATGTGCCACACATGGTGATAGGAACACCCCAGAGACCTACAGTATCCAATACCATTTTGGTAAACAGTCCACATACACCCAGTTCCCAGTTCCTCACTCAGAGTCAGCCATCAGACGCCTCTCCGTGGTCATCAGGAAAACGTGGtaagaaaggggaaaaaaacggGAAGGGCTTGAGGCATTTCTCCATGAAAGTGTGTGAGAAGGTGCAGAAGAAAGGAGTAACCACCTACAATGAAGTGGCAGATGAACTGGTTGCAGAATTCAGCTCTGCAGAGAGCCACATGTCACCCAATGACGCAcaTGTGTATGACCAGAAGAACATTCGGCGGCGTGTGTACGATGCACTTAATGTGCTTATGGCCATGAACATTATCTctaaagagaagaaagaaatcaAATGGATTGGCCTTCCCACCAACTCAGCGCAAGAGTGCCAAAACCTAGAGGTGGAGAGACAAAGGCGGTTGGAGAGGATTAAGCAGAAACAATCACAGCTTCAGGAGCTCATACTGCAGCAAATAGCTTTTAAGAACCTGGTTCAAcggaacagacagacagagcagcaggcaaACAGACCTCCACCTCCCAACTCCATCATCCACCTCCCCTTTATTATTGTCAACACCAGCAAGAAAACTGTCATTGACTGCAGCATCTCGAACGACAAGTTCGAGTATTTGTTCAATTTTGACAGCATGTTTGAGATCCACGATGACATTGAGGTGCTGAAACGTATGGGCATGGCCTGTGGTTTGGAGGTGGGAAAGTGTTCTCCAGAAGATCTGAAGGTTGCACGTAGCCTGGTGCCCAAAGCTCTGGAGCCATACGTTATAGagaTGGCAAAGGGTCCCATCAGTAACGTCTACATCACTGGAGGTTCCTCAGCAAATGGAGCCCGTTACCCTGCAAGCAGTGATGGCTGCACTGACGGCACCATGGCCTCCAGCTCGAATGACTCTCACTACAGCGGCTCTCGTGTGGAGACTCCAGTGTCTTATATGGGGGATGATGATGACGAGGATGAGTATGATGAGAACGATGACGAAGACTAACCCGTCTACACCTCGCCACTCCAACAAGCACAGTCCTTCAAACCACCTTCACCGTGGGAATTTAGTCCCCTTTTGTGTGTGCTTCTTCAACCTCTTCCCCGGTTTCCCATGCCTGTATTTGTGTCTGGCTTTCTCAGGGGTGTAGATGAATATTGAAAGAACAGAGGTGTACGTTGCACCCATCTTTTTCTGCTCCTGAATCACGTGCACCTGCACCACAGCTCTGGGGGAGGTGTCGTCAAGGGAACTGAAGTCTGTGGACTGGCCACCACGCTGAAGTCTTTGTATGTTTAATCCACTTCTCAATAAGCCATCccactaaaaagaaaaaaaagaaaaaaaactgtaaaacctACTGCTGTTGGAGAATGTATAATGTACTTGTTTGCATAGttattcctattttttttttttttttttttgcagttacaTTTGGCAGACATGATGATATGTTCCAAGATGGCCAAAGTGTCTGCTTTAACATGCTGTGTTAGTGCAACACCATTAGTTGTGAATGGCCTGATACAGTTGCCATGGCATCCCAGGATGGGGCTCCATCAGATGTGTtgatactttttgttttgtgttctgGGCAATAATTTGAAATAGTTTCTTATCCTCCATTGTGTTGGGCTGGCTTCCTTATGTTCTGTAGGCAGCTGCTTTCCTGATCTTGTTTGCTAGTTTTTTGTATTCTGGAGTGAAGGAATTCTCCATCATTGCCCTGTCAAAGCCTTGGTAGTGTTTACAAAATAATGGCACCAGCAAGGTAAAGACTTTTTATAACCTGGGCTCCTGATGGGTAAACAAGCTTTGTTTGTGAATTACGTATATGAATCTCTGACGATTGTAGCTTATAGTATCCTTAGAGGCCAGTGGTAAAGATAGACCTTGAAAAATTATTGATGTAAAACGATGTGTGGTTGCATAGGTCTTTATGTACTCCCTTCAAAGATCTCCCTTTTAAAACTTAGCAACACATGTACTGACTCTTCCAAAAACCTTTTCTGTAATCTAATATAAGTTTGCAAATTAAATATAGATTGTTTTAATAA

Function

symbol description
tfdp1 Enables protein domain specific binding activity. Contributes to DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in positive regulation of G1/S transition of mitotic cell cycle; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of RNA polymerase II transcription regulator complex.

NR:

description
transcription factor Dp-1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
K04683 TFDP1; transcription factor Dp-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817774.1 False 1468 mRNA 0.48 12 20996513 21005979
XM_039817775.1 False 1335 mRNA 0.48 12 20998312 21005979
XM_039817776.1 False 1489 mRNA 0.48 12 20998149 21005979
XM_039817777.1 False 1335 mRNA 0.48 12 20998024 21005979
XM_039817778.1 True 2596 mRNA 0.45 13 20996514 21007034

Neighbor

gene id symbol gene type direction distance location
lamp1b LOC104951941 coding upstream 19637 20971296 ~ 20976876 (+)
pou2f1b pou2f1 coding upstream 42943 20937568 ~ 20953570 (+)
nxpe3 nxpe3 coding upstream 111251 20875392 ~ 20885262 (+)
cep97 cep97 coding upstream 125179 20865935 ~ 20871334 (+)
gpr161a gpr161 coding upstream 173352 20813487 ~ 20823161 (+)
LOC120569739 LOC103352901,LOC102791869,LOC102207044,LOC101487838,LOC100703644 coding downstream 1643 21008677 ~ 21013333 (+)
jam2b LOC108232408 coding downstream 18208 21025242 ~ 21034814 (+)
LOC120569870 st6gal2 coding downstream 65144 21072178 ~ 21124442 (+)
uxs1 uxs1 coding downstream 145446 21152480 ~ 21194144 (+)
LOC120570592 fhl2,LOC104956538 coding downstream 262219 21269253 ~ 21274628 (+)
G125825 NA non-coding upstream 36551 20958707 ~ 20959962 (+)
G125826 NA non-coding upstream 38474 20953737 ~ 20958039 (+)
LOC120570516 NA non-coding upstream 85155 20903994 ~ 20911358 (+)
G125749 NA non-coding upstream 160759 20832494 ~ 20835754 (+)
G125738 NA non-coding upstream 170968 20795045 ~ 20825545 (+)
G125892 NA non-coding downstream 183998 21191032 ~ 21191666 (+)
G125903 NA non-coding downstream 200220 21207254 ~ 21207454 (+)
G125904 NA non-coding downstream 201925 21208959 ~ 21209742 (+)
G125915 NA non-coding downstream 268409 21275443 ~ 21275840 (+)
G125957 NA non-coding downstream 400479 21407513 ~ 21409113 (+)
G125757 rpl24 other upstream 131071 20860152 ~ 20865442 (+)
mpc2b mpc2 other upstream 137597 20853089 ~ 20858916 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other upstream 475239 20492178 ~ 20521274 (+)
myo16 myo16,LOC103372229 other upstream 730923 20153855 ~ 20265590 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other upstream 1003189 19968360 ~ 19993324 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other downstream 612314 21619348 ~ 21634757 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other downstream 648092 21655126 ~ 21691804 (+)
fbxl3a fbxl3 other downstream 1723889 22730923 ~ 22738653 (+)
G126363 lmo7 other downstream 1800159 22807193 ~ 22815102 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other downstream 1971568 22978602 ~ 23100083 (+)

Expression


Co-expression Network