hnrnpa3 (hnrnpa3)


Basic Information

Item Value
gene id hnrnpa3
gene name hnrnpa3
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18010757 ~ 18017413 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817798.1
gactggtTTCCTGTTCACGTGACCCACTCAGATCTCCGGCCGTGACATCTGCAAAATGGAGGACCGTGAAGCTAAAGAACCCGAGCAGCTCAGAAAGCTGTTTATTGGAGGTCTGAGCTTTGAAACCACGGAGGAGAGTTTACGGGCCCATTTTGAACAATGGGGAACTCTCACGGACTGTGTGGTGATGAGGGACCCCAACAACAAGAGATCAAGAGGGTTTGGCTTTGTGACATACGCCGCTGTAGAGGAAGTCGACGAAGCCATGAAAGCAAGGCCTCATAAAGTTGATGGCCGAGTTGTTGAACCCAAGAGGGCAGTGTCCAGAGAGGACTCCAATAAACCAGGTGCCCATCTGACAGTGAAGAAGATCTTTGTTGGTGGTATTAAGGAGGACACTGAGGAGTACCACATTCGGGAGCATTTTGAGAAATATGGAAAGATTGAGTGCATTGACATCATGGAGGAACGCTCCACTGGGAAGAAGAGAGGATTCTGCTTTGTCTCCTTTGATGATCATGACACTGTAGACAAAATTGTTGCCCAGAAATTCCACACAATCAACTTCCACAATTGTGAGGTCAGAAAAGCTCTCTCAAAACAGGAAATGAGTGCTATATCCACTACCAGGGGCAGGAGTGGAGGATCTGGAAACTTCATGGGGAGAGGTAGTAATTTTGGAGGTGGTGGCAACTTCGGTCGAGGTGGCTATGGTGGAGGACGAGGTGGTTATGGCGATGATTTTGACAATGGTCCAGGAGGAAATTATGGTGGAGGACCAGGTTATGGAGGGGGTCGAGGGGGCTATGGAGGTGGTGGTCCAGGGTATGGCAACCAGGGTGGTGGATTTGGTGGCAGCTGCGATGGAGGTTACGGAGGCAATGAcggagGATATGGAGGAGGTGGAAATTACAATGACTTTGGAAATTATGGTGGACAGCAGTCCAACTATGGGCCCATGAAGGGAAACAACTTTGGGGGCAGAAATTCGGGTGGACCCTATGGCGGTGGCTACAGCTCTGGTGGTGGTGGCGGAGGTGGCTATGGCTCACGGCGATATTAATTATTTCATGTTTTGGCTTCAGTTCTTAGCAGGAGAGGCGAGGAGGTGAGCAAAGGAGTTGTCAGGAAAGCTGCAGGTTACTTTGAGGCAGTCATCTGAAAGCATTAGAGGAACACAAAAGTCAGACATTACTGCAGCTAAATTGGAGAAGTTTATGGAAGAAGGACTGTATACACAAGACATGAGTGCAGATGTTACTCTTCCCTAATTGTGATAGATGTGTCCCAACCAAACTATTTTCCTTTTGTGTGTCTGAAGTGTGTGTATTGTGCCTATGGTATCAGGGGTAAagagtatttttttgtttttgtttatctgAAGTCAGttcttaattattttttttcttcttttttatatgGGTTAGTTTTCTGCTGGCCAATTaatcttttgtctttttaaccTGGTTTTTGTCATATAGCATAGTTCTATCAGGCCCTCAGATGAGCTAGAATTactcattttttttccttctgaaGTTATTATGATTGCTCAATTGCAAGTGTCAAGTGTATTTTGATTTTGTATGTGAAGCACAGTATGTAAATCCTTCGTAGTACCAGTGTCAACAAATATATGCAGTCTGGATTAGAATTAAGGGAATCCCCTCACTCACTTCTAGATTGTTCGAATATTTTGATTAGAAGAAAAAGACCGAATAAAATTGTGTAGTAAAGTAA
>XM_039817799.1
gactggtTTCCTGTTCACGTGACCCACTCAGATCTCCGGCCGTGACATCTGCAAAATGGAGGACCGTGAAGCTAAAGAACCCGAGCAGCTCAGAAAGCTGTTTATTGGAGGTCTGAGCTTTGAAACCACGGAGGAGAGTTTACGGGCCCATTTTGAACAATGGGGAACTCTCACGGACTGTGTGGTGATGAGGGACCCCAACAACAAGAGATCAAGAGGGTTTGGCTTTGTGACATACGCCGCTGTAGAGGAAGTCGACGAAGCCATGAAAGCAAGGCCTCATAAAGTTGATGGCCGAGTTGTTGAACCCAAGAGGGCAGTGTCCAGAGAGGACTCCAATAAACCAGGTGCCCATCTGACAGTGAAGAAGATCTTTGTTGGTGGTATTAAGGAGGACACTGAGGAGTACCACATTCGGGAGCATTTTGAGAAATATGGAAAGATTGAGTGCATTGACATCATGGAGGAACGCTCCACTGGGAAGAAGAGAGGATTCTGCTTTGTCTCCTTTGATGATCATGACACTGTAGACAAAATTGTTGCCCAGAAATTCCACACAATCAACTTCCACAATTGTGAGGTCAGAAAAGCTCTCTCAAAACAGGAAATGAGTGCTATATCCACTACCAGGGGCAGGAGTGGAGGATCTGGAAACTTCATGGGGAGAGGTAGTAATTTTGGAGGTGGTGGCAACTTCGGTCGAGGTGGCTATGGTGGAGGACGAGGTGGTTATGGCGATGATTTTGACAATGGTCCAGGAGGAAATTATGGTGGAGGACCAGGTTATGGAGGGGGTCGAGGGGGCTATGGAGGTGGTGGTCCAGGGTATGGCAACCAGGGTGGTGGATTTGGTGGCAGCTGCGATGGAGGTTACGGAGGCAATGAcggagGATATGGAGGAGGTGGAAATTACAATGACTTTGGAAATTATGGTGGACAGCAGTCCAACTATGGGCCCATGAAGGGAAACAACTTTGGGGGCAGAAATTCGGGTGGACCCTATGGCGGTGGCTACAGCTCTGGTGGTGGTGGCGGAGGTGGCTATGGCTCACGGCGATATTAATTATTTCATGTTTTGATGTGGAAAGAGGCATTCTCTTCTTGCTGAAAATCTGTAAAGACCTGATAACATGGAAGGTTCTGGATGGGTAAGACTTTTCAAAATATTATCCAAGGCTGCTTATATTGTAATCTAACAGTGCACATGGTGATTATACAAGGTGCAGGGGTTCCTTTAAGGTAAAAAGAGCAGTATGACACCCAGTATTGCTCCACTTTGACCGGAATCAGCCTGTAACCTTCACCACACCTCTTGGAATACCCTCAAGGCAAAATATGTTTCCATGTTTTATTACCTTTGCTATCAGTTAGATAGTCCTGATAAAGTTGATTGTGATGAAACACCCTTGGGGTAACAACAAATGATAATGCTTGGAAAAAATGAACAGTATTTACACTCACTTTATTAGGCGCACCTATACAATTTATTATAATTCAAGAAAGCAGAACTTACATACATTCTGCCTTTACAAAGTTCAGCTTTTGTTGACCTTGGAAATGTATAAATTCAATTACACGTTTATTACTGAGGTCACAGTTAACGGGTTGCGTAGTGCTGGACTACATTATATTGAGAGGTGTTTCTAATGTTTTGTCCTCTACACACATGATGGGGACAGAACACTTGTTAATATAATGTAGTCTAGTTACACCACCACTAAGTATAACCTCAGTGTTAAAACATTGAATTAGCACCTTAATGTCAgtgtcaaaacaaagaacattaTTGGCATCATAAAAGTggactttctttttaaaatgttatagcattaataaaaaaaaaagaattgatgGTAAAACGgttgtattggattgcattagattgtacatgtacctaataaagtggccaCTGAGTGTATATACTAATGCCAAGctgtgaaaaataaaagtatggAAATCAGGTCCTTGCCAGTCCGTGGAAATAAGGATAACATTGTTAACATAATAGAAAAGCATTTGTAGGTAACTTAATTATTACTACGAAAGGCAGGCCATATATAGTAAGTATAATGCAAAAATAgtattcaattaaaaaaaaaaaattgtttatatgtatattgtttgtAATCAGTAACATGAAACATCTAACAGGTGTCATGTCAAATCCTCTGCATTAATCACAGGGGCATTTTCCCAAAAAAACTGATATAGGATTTATTAAACAATTTTACTTGACAGGCAGTCAAATGAACATACAGAAACATGGGCAAACTATCAACAGAGAGGAACTGTGGTCACAAGTTGAAACTATCCAACAGTGTTATGATAAACGGAGTATACACAAATACTCCTAGTTCTCTACTCAGTctaaaaataaagaacaatgcctgctgatgtttttttttttttatcatcagttCAAGGATAGAGTTTCTGCAGAGGAATGTAGAACAACAAACTCAATTACACAGAATAAAACTGTGCTTGGCATAAGCACACCAGTGTCAATACACTACGTTGGCCTAACAGTAAGATGTTAAGTGTTACTTgtgcttttaaataaaaatatttttcatga
>XR_005640963.1
gactggtTTCCTGTTCACGTGACCCACTCAGATCTCCGGCCGTGACATCTGCAAAATGGAGGACCGTGAAGCTAAAGAACCCGAGCAGCTCAGAAAGCTGTTTATTGGAGGTCTGAGCTTTGAAACCACGGAGGAGAGTTTACGGGCCCATTTTGAACAATGGGGAACTCTCACGGACTGTGTGGTGATGAGGGACCCCAACAACAAGAGATCAAGAGGGTTTGGCTTTGTGACATACGCCGCTGTAGAGGAAGTCGACGAAGCCATGAAAGCAAGGCCTCATAAAGTTGATGGCCGAGTTGTTGAACCCAAGAGGGCAGTGTCCAGAGAGGACTCCAATAAACCAGGTGCCCATCTGACAGTGAAGAAGATCTTTGTTGGTGGTATTAAGGAGGACACTGAGGAGTACCACATTCGGGAGCATTTTGAGAAATATGGAAAGATTGAGTGCATTGACATCATGGAGGAACGCTCCACTGGGAAGAAGAGAGGATTCTGCTTTGTCTCCTTTGATGATCATGACACTGTAGACAAAATTGTTGCCCAGAAATTCCACACAATCAACTTCCACAATTGTGAGGTCAGAAAAGCTCTCTCAAAACAGGAAATGAGTGCTATATCCACTACCAGGGGCAGGAGTGGAGGATCTGGAAACTTCATGGGGAGAGGTAGTAATTTTGGAGGTGGTGGCAACTTCGGTCGAGGTGGCTATGGTGGAGGACGAGGTGGTTATGGCGATGATTTTGACAATGGTCCAGGAGGAAATTATGGTGGAGGACCAGGTTATGGAGGGGGTCGAGGGGGCTATGGAGGTGGTGGTCCAGGGTATGGCAACCAGGGTGGTGGATTTGGTGGCAGCTGCGATGGAGGTTACGGAGGCAATGAcggagGATATGGAGGAGGTGGAAATTACAATGACTTTGGAAATTATGGTGGACAGCAGTCCAACTATGGGCCCATGAAGGGAAACAACTTTGGGGGCAGAAATTCGGGTGGACCCTATGGCGGTGGCTACAGCTCTGGTGGTGGTGGCGGAGGTGGCTATGGCTCACGGCGATATTAATTATTTCATGTTTTGATGTGGAAAGAGGCATTCTCTTCTTGCTGAAAATCTGTAAAGACCTGATAACATGGAAGGTTCTGGATGGttCAAGGATAGAGTTTCTGCAGAGGAATGTAGAACAACAAACTCAATTACACAGAATAAAACTGTGCTTGGCATAAGCACACCAGTGTCAATACACTACGTTGGCCTAACAGTAAGATGTTAAGTGTTACTTgtgcttttaaataaaaatatttttcatga

Function

symbol description
hnrnpa3 Predicted to enable RNA binding activity. Predicted to be located in viral nucleocapsid. Orthologous to human HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3).

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein A3

GO: NA

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817798.1 False 1740 mRNA 0.45 11 18010757 18015244
XM_039817799.1 True 2578 mRNA 0.41 11 18010757 18017413
XR_005640963.1 False 1309 transcript 0.48 12 18010757 18017413

Neighbor

gene id symbol gene type direction distance location
hoxd3a hoxd3 coding upstream 101161 17901079 ~ 17909596 (+)
hoxd4a hoxd4 coding upstream 111059 17896012 ~ 17899698 (+)
hoxd9a hoxd9,LOC100697606,LOC102311238,LOC101477388,LOC102193136,LOC102792463 coding upstream 126141 17882466 ~ 17884616 (+)
hoxd11a hoxd11 coding upstream 132604 17873682 ~ 17878153 (+)
hoxd12a hoxd12 coding upstream 140598 17867862 ~ 17870159 (+)
agps agps,LOC102790648 coding downstream 13412 18030825 ~ 18061294 (+)
osbpl6 osbpl6 coding downstream 101111 18118524 ~ 18153899 (+)
gpr1 gpr1 coding downstream 194539 18211952 ~ 18213811 (+)
LOC120569837 ndufs1 coding downstream 197558 18214971 ~ 18223611 (+)
LOC120569834 ino80d coding downstream 206835 18224248 ~ 18233735 (+)
G124841 hoxd12,hoxd10,LOC108239741,LOC107579206 non-coding upstream 129252 17860753 ~ 17881505 (+)
G124834 NA non-coding upstream 174531 17834219 ~ 17836226 (+)
G124819 NA non-coding upstream 273771 17736110 ~ 17736986 (+)
G124816 atp5g3,LOC102234286 non-coding upstream 277506 17730056 ~ 17733251 (+)
G124804 NA non-coding upstream 322943 17687571 ~ 17687814 (+)
G124895 NA non-coding downstream 71812 18089225 ~ 18089543 (+)
G124901 NA non-coding downstream 111838 18129251 ~ 18182236 (+)
G124914 adam23 non-coding downstream 170005 18187418 ~ 18188518 (+)
G124915 NA non-coding downstream 171427 18188840 ~ 18189132 (+)
G124924 NA non-coding downstream 216629 18234042 ~ 18297620 (+)
hoxd10a hoxd10,LOC102792757 other upstream 129429 17860160 ~ 17881328 (+)
myo3b myo3b other upstream 812167 17127881 ~ 17198590 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other upstream 987197 16988071 ~ 17023560 (+)
dap1b dapl1 other upstream 1909115 16099271 ~ 16101642 (+)
LOC120570321 NA other upstream 2032883 15970982 ~ 15977874 (+)
G125079 NA other downstream 685615 18703028 ~ 18704528 (+)
LOC120570507 NA other downstream 801340 18818753 ~ 18827547 (+)
tmsb4x NA other downstream 1072005 19089418 ~ 19090785 (+)
igsf3 LOC103352919,LOC104967650 other downstream 1370602 19388015 ~ 19459274 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other downstream 1950947 19968360 ~ 19993324 (+)

Expression


Co-expression Network