tfg (tfg)


Basic Information

Item Value
gene id tfg
gene name tfg
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22332905 ~ 22350059 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817981.1
AATGCCACGTACTGGTTGACGTTGACAGTCTTGGAGGACACTTCCTGATGCTGGCACCCGGGTCTAGCCGCTAAGCTAGCTAACAGATTTTATTTTCACGGTTTGGGAAAACCTGTGAAACTGCGTGGTCAAGTCGTCTGATTGAGTGGTGGGAGCAGAAGAGGTCGGACGGCACCATGAACGGCCAGCTGGACCTGAGTGGGAAGCTGATCATCAAAGCCCAATTGGGCGATGACATCAGACGCATCCCGATTCATAACGAAGACATTACTTATGACGAGCTAGTGCTAATGATGCAGCGTGTCTTCAGGGGAAAGCTGCAGAGTAATGACGAGGTTGCCATCAAATACAAGGATGAAGATGATGATCTCATCACCATCTTTGACAGCTCTGACCTCTCCTTCGCCATCCAGTGCAGTAGAATACTCAAACTGACTTTGTTTGTGAATGGTCAGCCACGGCCTTTGGAGTCTAGTCAGGTGAAGTACCTGCGCAGGGAGCTCATTGAGCTCAGGAATAAAGTCAACAACCTCCTGGATAGCTTGGAGCCCCCCACAGAGCCTGGTCTGGCTGCTACAGCACCGTACAGTGAAGCAGTGGATGGACGTGAAGGCAAAGTTTTGGCAGCAGACCACACAGTGAAACATGCCACTCCAGTCAGTGCAGCCAGCATGTCAGCCTTCGACCCATTAAAAAACCAGGATGAGGTCAGCAAGAATGTCATCTCCGCTTTTGGCCTGAGCGAGGACCAGGCCCCAGCTCCCCCAGCGGTTGCACCAGAGGAGCGCTCAGGAACCCCTGACAGCATTGCCTCCTCCTCGTCTGCAGCCCCTCAGCCAGTGGTGCCCCCCCAACCACAGGCTCCCTATGCAGGAGTACAACAGGGACCCCCAGCTGGCATGGATGGTCAGGTTTATCAGCAGTACCAGGCTCCAGGTGGATACCCGCCTCAGCAACCAGGTGCCCcacctcagcagcagcagcagtacaaTATGCAATACTCTGGATACAGCACTCAGCCCGGTGCCCCTCAGCCTGGCCCACCacagccacagcagcagcagtttcagAACTACGCGCCTCCCTCCTCCCAGGCTCCAGCCTCCGGTCCAGCTCCGGCTCCAGCTCCGGGTTTCCAGGGTGGCCAGCAGCAGCCCCATCCAACTCAGGGAGCCCAGCAGTATCAAGGAGCCTTCCCTCCCCAAAACTATACATCCCAGGCCACCCAGCCTGCCAACTACAGCCTGCCGCCCAGCTCCCAGCCCGGCTCAGCGTACCAACCCCGCCCAGGATACACCCCGCCTCCAGGCAACACTGTCACCCCTCCACCAGGATCTGCTAACCCGTACGCTCGCAACCGCCCCCCTTACGGCCAGGGCTATACTCAGCCAGGCCCTGGGTATCGGTAAAAAAGGATAGCGGATGTTACTAATCCTTACACACATCCCAAACCCTTCCCCTGTGGGGCTCCAACTGTTTGGAGTGTGTGCAGTAAACATGGTTTACTGCtctgcacccccccccccccccccccctcccgtaCAAATATCAAGTCCAAATATGAAACAAGCAACCCCACCCGTCTGATGGTTATTGTTTGTATGCTGTCTCTTCAACACACCACTCTACTCTGGCCCTGGTGTATGTTCCTTGTGTTGTTTTCCCCTCTTCTCCTGTCACATCACCAATGTCTGCTCTGCCCTCTTGTATCCATAAACATGTAACCGGTCTGTATGCACACACCTGGGTAACCAAAACAGGCTGTTGCACAAACAGTTTATTGTTCTTTTCATGGTAACGCTTCATTTTGCAAGTGAGGTCAGCATCCGTATTCTGCGTTTGTGTCTTACATGTCAATGACCGAGATCTCAACCGCTTGTGTTGAGTTAACTATGTATAGATGCATTTATAAGACGCTATCTAAATGAAAAGTTACCcgttttttgtcatttgttttgtcttctttgtttagttttttttttgattttatcaATTTCACCACCATGTCGGTATTAATGATGTGTCAATGAAACTGCCCCATGTTGGGAACACTAGCTAAGTGATGGCTTATGGGAGAAGTAGATCCCAGCGTCATAAATAAAGCTTCTTTTGTTTAGCTAATTATATCATCTCCAGTAAAGCTTGgtattcctctctttctctttatctTATCACTGGTTTTTACTAATAAATCAAATTCCACCCTCAAGTGAGATTAGTTGTTTATGTATAAACtgtaacactttttttcttgaaCCTAATAAATGATTGAGACCCAG
>XM_039817982.1
AATGCCACGTACTGGTTGACGTTGACAGTCTTGGAGGACACTTCCTGATGCTGGCACCCGGGTCTAGCCGCTAAGCTAGCTAACAGATTTTATTTTCACGGTTTGGGAAAACCTGTGAAACTGCGTGGTCAAGTCGTCTGATTGAGTGGTGGGAGCAGAAGAGGTCGGACGGCACCATGAACGGCCAGCTGGACCTGAGTGGGAAGCTGATCATCAAAGCCCAATTGGGCGATGACATCAGACGCATCCCGATTCATAACGAAGACATTACTTATGACGAGCTAGTGCTAATGATGCAGCGTGTCTTCAGGGGAAAGCTGCAGAGTAATGACGAGGTTGCCATCAAATACAAGGATGAAGATGATGATCTCATCACCATCTTTGACAGCTCTGACCTCTCCTTCGCCATCCAGTGCAGTAGAATACTCAAACTGACTTTGTTTGTGAATGGTCAGCCACGGCCTTTGGAGTCTAGTCAGGTGAAGTACCTGCGCAGGGAGCTCATTGAGCTCAGGAATAAAGTCAACAACCTCCTGGATAGCTTGGAGCCCCCCACAGAGCCTGGTCTGGCTGCTACAGCACCGTACAGTGCAGTGGATGGACGTGAAGGCAAAGTTTTGGCAGCAGACCACACAGTGAAACATGCCACTCCAGTCAGTGCAGCCAGCATGTCAGCCTTCGACCCATTAAAAAACCAGGATGAGGTCAGCAAGAATGTCATCTCCGCTTTTGGCCTGAGCGAGGACCAGGCCCCAGCTCCCCCAGCGGTTGCACCAGAGGAGCGCTCAGGAACCCCTGACAGCATTGCCTCCTCCTCGTCTGCAGCCCCTCAGCCAGTGGTGCCCCCCCAACCACAGGCTCCCTATGCAGGAGTACAACAGGGACCCCCAGCTGGCATGGATGGTCAGGTTTATCAGCAGTACCAGGCTCCAGGTGGATACCCGCCTCAGCAACCAGGTGCCCcacctcagcagcagcagcagtacaaTATGCAATACTCTGGATACAGCACTCAGCCCGGTGCCCCTCAGCCTGGCCCACCacagccacagcagcagcagtttcagAACTACGCGCCTCCCTCCTCCCAGGCTCCAGCCTCCGGTCCAGCTCCGGCTCCAGCTCCGGGTTTCCAGGGTGGCCAGCAGCAGCCCCATCCAACTCAGGGAGCCCAGCAGTATCAAGGAGCCTTCCCTCCCCAAAACTATACATCCCAGGCCACCCAGCCTGCCAACTACAGCCTGCCGCCCAGCTCCCAGCCCGGCTCAGCGTACCAACCCCGCCCAGGATACACCCCGCCTCCAGGCAACACTGTCACCCCTCCACCAGGATCTGCTAACCCGTACGCTCGCAACCGCCCCCCTTACGGCCAGGGCTATACTCAGCCAGGCCCTGGGTATCGGTAAAAAAGGATAGCGGATGTTACTAATCCTTACACACATCCCAAACCCTTCCCCTGTGGGGCTCCAACTGTTTGGAGTGTGTGCAGTAAACATGGTTTACTGCtctgcacccccccccccccccccccctcccgtaCAAATATCAAGTCCAAATATGAAACAAGCAACCCCACCCGTCTGATGGTTATTGTTTGTATGCTGTCTCTTCAACACACCACTCTACTCTGGCCCTGGTGTATGTTCCTTGTGTTGTTTTCCCCTCTTCTCCTGTCACATCACCAATGTCTGCTCTGCCCTCTTGTATCCATAAACATGTAACCGGTCTGTATGCACACACCTGGGTAACCAAAACAGGCTGTTGCACAAACAGTTTATTGTTCTTTTCATGGTAACGCTTCATTTTGCAAGTGAGGTCAGCATCCGTATTCTGCGTTTGTGTCTTACATGTCAATGACCGAGATCTCAACCGCTTGTGTTGAGTTAACTATGTATAGATGCATTTATAAGACGCTATCTAAATGAAAAGTTACCcgttttttgtcatttgttttgtcttctttgtttagttttttttttgattttatcaATTTCACCACCATGTCGGTATTAATGATGTGTCAATGAAACTGCCCCATGTTGGGAACACTAGCTAAGTGATGGCTTATGGGAGAAGTAGATCCCAGCGTCATAAATAAAGCTTCTTTTGTTTAGCTAATTATATCATCTCCAGTAAAGCTTGgtattcctctctttctctttatctTATCACTGGTTTTTACTAATAAATCAAATTCCACCCTCAAGTGAGATTAGTTGTTTATGTATAAACtgtaacactttttttcttgaaCCTAATAAATGATTGAGACCCAG
>XM_039817983.1
AATGCCACGTACTGGTTGACGTTGACAGTCTTGGAGGACACTTCCTGATGCTGGCACCCGGGTCTAGCCGCTAAGCTAGCTAACAGATTTTATTTTCACGGTTTGGGAAAACCTGTGAAACTGCGTGGTCAAGTCGTCTGATTGAGTGGTGGGAGCAGAAGAGGTCGGACGGCACCATGAACGGCCAGCTGGACCTGAGTGGGAAGCTGATCATCAAAGCCCAATTGGGCGATGACATCAGACGCATCCCGATTCATAACGAAGACATTACTTATGACGAGCTAGTGCTAATGATGCAGCGTGTCTTCAGGGGAAAGCTGCAGAGTAATGACGAGGTTGCCATCAAATACAAGGATGAAGATGATGATCTCATCACCATCTTTGACAGCTCTGACCTCTCCTTCGCCATCCAGTGCAGTAGAATACTCAAACTGACTTTGTTTGTGAATGGTCAGCCACGGCCTTTGGAGTCTAGTCAGGTGAAGTACCTGCGCAGGGAGCTCATTGAGCTCAGGAATAAAGTCAACAACCTCCTGGATAGCTTGGAGCCCCCCACAGAGCCTGGTCTGGCTGCTACAGCACCGTACAGTGAAGCAGTGGATGGACGTGAAGGCAAAGTTTTGGCAGCAGACCACACAGTGAAACATGCCACTCCAGTCAGTGCAGCCAGCATGTCAGCCTTCGACCCATTAAAAAACCAGGATGAGGTCAGCAAGAATGTCATCTCCGCTTTTGGCCTGAGCGAGGACCAGGCCCCAGGTCAGGTTTATCAGCAGTACCAGGCTCCAGGTGGATACCCGCCTCAGCAACCAGGTGCCCcacctcagcagcagcagcagtacaaTATGCAATACTCTGGATACAGCACTCAGCCCGGTGCCCCTCAGCCTGGCCCACCacagccacagcagcagcagtttcagAACTACGCGCCTCCCTCCTCCCAGGCTCCAGCCTCCGGTCCAGCTCCGGCTCCAGCTCCGGGTTTCCAGGGTGGCCAGCAGCAGCCCCATCCAACTCAGGGAGCCCAGCAGTATCAAGGAGCCTTCCCTCCCCAAAACTATACATCCCAGGCCACCCAGCCTGCCAACTACAGCCTGCCGCCCAGCTCCCAGCCCGGCTCAGCGTACCAACCCCGCCCAGGATACACCCCGCCTCCAGGCAACACTGTCACCCCTCCACCAGGATCTGCTAACCCGTACGCTCGCAACCGCCCCCCTTACGGCCAGGGCTATACTCAGCCAGGCCCTGGGTATCGGTAAAAAAGGATAGCGGATGTTACTAATCCTTACACACATCCCAAACCCTTCCCCTGTGGGGCTCCAACTGTTTGGAGTGTGTGCAGTAAACATGGTTTACTGCtctgcacccccccccccccccccccctcccgtaCAAATATCAAGTCCAAATATGAAACAAGCAACCCCACCCGTCTGATGGTTATTGTTTGTATGCTGTCTCTTCAACACACCACTCTACTCTGGCCCTGGTGTATGTTCCTTGTGTTGTTTTCCCCTCTTCTCCTGTCACATCACCAATGTCTGCTCTGCCCTCTTGTATCCATAAACATGTAACCGGTCTGTATGCACACACCTGGGTAACCAAAACAGGCTGTTGCACAAACAGTTTATTGTTCTTTTCATGGTAACGCTTCATTTTGCAAGTGAGGTCAGCATCCGTATTCTGCGTTTGTGTCTTACATGTCAATGACCGAGATCTCAACCGCTTGTGTTGAGTTAACTATGTATAGATGCATTTATAAGACGCTATCTAAATGAAAAGTTACCcgttttttgtcatttgttttgtcttctttgtttagttttttttttgattttatcaATTTCACCACCATGTCGGTATTAATGATGTGTCAATGAAACTGCCCCATGTTGGGAACACTAGCTAAGTGATGGCTTATGGGAGAAGTAGATCCCAGCGTCATAAATAAAGCTTCTTTTGTTTAGCTAATTATATCATCTCCAGTAAAGCTTGgtattcctctctttctctttatctTATCACTGGTTTTTACTAATAAATCAAATTCCACCCTCAAGTGAGATTAGTTGTTTATGTATAAACtgtaacactttttttcttgaaCCTAATAAATGATTGAGACCCAG

Function

symbol description
tfg Predicted to enable identical protein binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within COPII vesicle coating. Predicted to be active in endoplasmic reticulum exit site. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 57. Orthologous to human TFG (trafficking from ER to golgi regulator).

NR:

description
PREDICTED: protein TFG isoform X1

GO: NA

KEGG:

id description
K09292 TFG; protein TFG

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817981.1 True 2279 mRNA 0.51 8 22332905 22350059
XM_039817982.1 False 2276 mRNA 0.51 8 22332905 22350059
XM_039817983.1 False 2132 mRNA 0.50 7 22332905 22350059

Neighbor

gene id symbol gene type direction distance location
jagn1a LOC104964438,LOC103371888,LOC106923881,LOC103134718 coding upstream 104 22330500 ~ 22332801 (+)
col8a1a col8a1 coding upstream 3273 22316100 ~ 22329632 (+)
tmem30c LOC104964416 coding upstream 60282 22268840 ~ 22272623 (+)
cmss1 cmss1 coding upstream 64457 22227032 ~ 22268448 (+)
nr0b1 nr0b1,LOC103362601 coding upstream 447477 21883581 ~ 21885428 (+)
mycbp2 mycbp2,LOC102794783 coding downstream 318247 22668306 ~ 22730423 (+)
zgc:162944 LOC104958623,LOC102208337,LOC101482774 coding downstream 394401 22744460 ~ 22747518 (+)
kctd12.1 kctd12 coding downstream 403046 22753105 ~ 22754604 (+)
commd6 commd6,LOC102792157 coding downstream 500882 22850941 ~ 22855543 (+)
tbc1d4 tbc1d4 coding downstream 506891 22856950 ~ 22887388 (+)
G126000 NA non-coding upstream 850880 21479929 ~ 21482025 (+)
G125994 txndc9 non-coding upstream 856155 21473163 ~ 21476750 (+)
G125992 mitd1,LOC102785871 non-coding upstream 864773 21465910 ~ 21468132 (+)
G125958 NA non-coding upstream 922940 21409192 ~ 21409965 (+)
G125957 NA non-coding upstream 923792 21407513 ~ 21409113 (+)
G126160 LOC103371890 non-coding downstream 968 22351027 ~ 22352358 (+)
G126162 LOC103371890 non-coding downstream 6035 22356094 ~ 22357669 (+)
G126169 NA non-coding downstream 35470 22385529 ~ 22385754 (+)
G126175 NA non-coding downstream 95269 22445328 ~ 22446121 (+)
G126246 NA non-coding downstream 185072 22535131 ~ 22537513 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other upstream 641101 21655126 ~ 21691804 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other upstream 698148 21619348 ~ 21634757 (+)
G125757 rpl24 other upstream 1467463 20860152 ~ 20865442 (+)
mpc2b mpc2 other upstream 1473989 20853089 ~ 20858916 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other upstream 1811631 20492178 ~ 20521274 (+)
fbxl3a fbxl3 other downstream 380864 22730923 ~ 22738653 (+)
G126363 lmo7 other downstream 457134 22807193 ~ 22815102 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other downstream 628543 22978602 ~ 23100083 (+)
cwc22 cwc22 other downstream 1833890 24183949 ~ 24199835 (+)
sestd1 sestd1 other downstream 1927098 24277157 ~ 24298218 (+)

Expression


Co-expression Network