hoxd10a (hoxd10,LOC102792757)


Basic Information

Item Value
gene id hoxd10a
gene name hoxd10,LOC102792757
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17860160 ~ 17881328 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817998.1
ATATGTCAGCTTACAAAGGACATCTCTCTCCTCTAAAGAACTTAACCCCCCAAAATGTCCTTTCCCAGTAGCTCTCCTGCGGCAAACCCATTTTTAGTGGACTCGTTAATTGGTGCATGCAGGTCGGACAGCTTTTACTCCAGCAGCAACATGTACATGCCGTCTGGCTCACAAATGGGAACTTACGGAATGCAAACCTGTGGACTCCTGCCGTCTTTCGGCAAAAGAGGGGAGGTCAACCACCAAAATATGGGCATGAATGTCCACTCGTACATACCTCAAATAGATAGCTGGACTGATCCGAATAGACCCTGCCGAATAGAGCCGTCCAGTCAGATGTCAAACTGTACATTTTCACAGAGCATAAAGGAAGAGAGTAACTGCTGCATGTACTCCGATAAGAGAGTACAACATGTCAGCTCTTCAGATGTGCCCGTATATTCTAACGTTATTTCCGAGTCTTGTTCTGTTGATGGTCCCGAGATCCCGGTTCCGGGCTATTTCAGACTGAGCCAAACTTATGCGAATGGGAAACATCAGGAAAACTACTGCCATGAGCCGCCGAGTCCAAACCCAACACTGATGCAGCTCAGCCGGGTCACCCCGAAACCGCAGTCCTCCTCTGCGCCTTCTAATTTTACAGAGGTTGAAAAGAAAAGTGACGACGTCCCTCAAAACCCCGAGACCTCAAGGACACCGGTCCCCGCAGAAAGCCCAGATCTAAAGTCCAGCTCCGGGGAGAAAAAATGCTCCATGGAAGCCTCTGTGTCCAGTCCTGAACTGCTTCAGAAGGAGGGGAAAGACTGCACGCCGACAAGCAACTGGTTAACTGCAAAAAgtgggagaaagaaaagatgTCCCTACACAAAGCACCAGACCTTGGAGTTGGAGAAGGAGTTTCTCTTCAATATGTATCTGACCCGAGAGCGCCGCCTAGAGATCAGCAGGGGCGTCAACCTGACCGACAGGCAGGTCAAGATCTGGTTTCAGAACCGCAGGATGAAACTGAAGAAAATGAACAGAGAAAACCGCATCCGTGAACTGACCTCAAATCTCACCTTTTCGTGagcgtgcatgtgtctgtggttagctgtcttttattttctctcatcttCAGTTTGATGCTTTATTGGCATTGGACGTGTATCTTCAATTTCAACGAAACTgtgactatatactgtataagccAATTTTAGTACTTTGTGTGGCGTcgtgtatttgttttatttgatcaGGGTAACACTTTTTGGTCTTAAATTATTGGAAAAGTAGATTTCCTCCCTGTAGCCTGTAGACATGGATATTCTATTGTGTCACGATGGCGAGAGCTGGAAAAGAGTTAATCATATTTTCATTCATGAAAGCACATTTCTTGTCACGTAGTGCAacatttgttttacagtaaGTGCAAGCCATTTGCTCAACCGTGTAATGTTTCTATGGCTGAAAACGATGTTAATCTGTGAATTGATTGCATGTTTGTGGCATGTATCTTAATAAATTATCAAATaata
>XR_005640988.1
ttttaatatttatttggtAGAACTATAGCTTTCAAAGACATCAGCAGACagtttgacttgtcatagcagcaAAAGCAAAgttgttactaataacattacatgGCTCTGTTCAATACAAGTGTCCATGTTAGCAGCGGAATCTGAAGCAGTACCAGGCTCCGGTGGCCATTAGAGGAACTGCAACTCAAGGCACATGGTGGCTGCACTTACACTGCACAGGGCTGCATGGAGGGCCCCGGACAATAGGAGCTCACCTCTCTGAAGGCCTCCCTTTGACATGGGACCCCTACATGCTCCCTAAAAGACTGCACGCCGACAAGCAACTGGTTAACTGCAAAAAgtgggagaaagaaaagatgTCCCTACACAAAGCACCAGACCTTGGAGTTGGAGAAGGAGTTTCTCTTCAATATG
>XR_005640989.1
CACCCACACGTTTTGTCAGTTATTCTGCTGATTGGACCTCTGCTCAGATAGAAAGTGGGCGAGCTATGATGGGagttatgctgcgttccagacgcaatttttagcccTACCAGGCTCCGGTGGCCATTAGAGGAACTGCAACTCAAGGCACATGGTGGCTGCACTTACACTGCACAGGGCTGCATGGAGGGCCCCGGACAATAGGAGCTCACCTCTCTGAAGGCCTCCCTTTGACATGGGACCCCTACATGCTCCCTAAAAGACTGCACGCCGACAAGCAACTGGTTAACTGCAAAAAgtgggagaaagaaaagatgTCCCTACACAAAGCACCAGACCTTGGAGTTGGAGAAGGAGTTTCTCTTCAATATG
>XR_005640990.1
AGCAGAGTCAAAGAGATACCAATCAATTCGTGTGAACatacccacacagtcctgagaAGAGGTCTAATTAGCTTAATGATTAAAATCATCTGCGTGTTTACCAAGGTACCAGGCTCCGGTGGCCATTAGAGGAACTGCAACTCAAGGCACATGGTGGCTGCACTTACACTGCACAGGGCTGCATGGAGGGCCCCGGACAATAGGAGCTCACCTCTCTGAAGGCCTCCCTTTGACATGGGACCCCTACATGCTCCCTAAAAGACTGCACGCCGACAAGCAACTGGTTAACTGCAAAAAgtgggagaaagaaaagatgTCCCTACACAAAGCACCAGACCTTGGAGTTGGAGAAGGAGTTTCTCTTCAATATG

Function

symbol description
hoxd10 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including limb morphogenesis; neuron differentiation; and regionalization. Located in cytoplasmic ribonucleoprotein granule; cytosol; and nucleoplasm. Implicated in congenital vertical talus.

NR:

description
homeobox protein Hox-D10

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09295 HOXD10; homrobox protein Hox-D10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817998.1 True 1514 mRNA 0.45 2 17879110 17881328
XR_005640988.1 False 414 transcript 0.46 3 17860872 17880726
XR_005640989.1 False 372 transcript 0.51 3 17860160 17880726
XR_005640990.1 False 371 transcript 0.49 3 17860753 17880726

Neighbor

gene id symbol gene type direction distance location
scrn3 scrn3,LOC102796247 coding upstream 211908 17643338 ~ 17648252 (+)
sp9 sp9 coding upstream 225221 17632728 ~ 17634939 (+)
cdca7a cdca7 coding upstream 327904 17527950 ~ 17532256 (+)
zak LOC104965553 coding upstream 333456 17501695 ~ 17526704 (+)
rapgef4a rapgef4,LOC101483582 coding upstream 362076 17465228 ~ 17498084 (+)
hoxd9a hoxd9,LOC100697606,LOC102311238,LOC101477388,LOC102193136,LOC102792463 coding downstream 1138 17882466 ~ 17884616 (+)
hoxd4a hoxd4 coding downstream 14684 17896012 ~ 17899698 (+)
hoxd3a hoxd3 coding downstream 19751 17901079 ~ 17909596 (+)
agps agps,LOC102790648 coding downstream 149497 18030825 ~ 18061294 (+)
osbpl6 osbpl6 coding downstream 237196 18118524 ~ 18153899 (+)
G124834 NA non-coding upstream 23934 17834219 ~ 17836226 (+)
G124819 NA non-coding upstream 123174 17736110 ~ 17736986 (+)
G124816 atp5g3,LOC102234286 non-coding upstream 126909 17730056 ~ 17733251 (+)
G124804 NA non-coding upstream 172346 17687571 ~ 17687814 (+)
G124797 chn1,LOC102233772 non-coding upstream 185705 17672255 ~ 17674455 (+)
G124895 NA non-coding downstream 207897 18089225 ~ 18089543 (+)
G124901 NA non-coding downstream 247923 18129251 ~ 18182236 (+)
G124914 adam23 non-coding downstream 306090 18187418 ~ 18188518 (+)
G124915 NA non-coding downstream 307512 18188840 ~ 18189132 (+)
G124924 NA non-coding downstream 352714 18234042 ~ 18297620 (+)
myo3b myo3b other upstream 661570 17127881 ~ 17198590 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other upstream 836600 16988071 ~ 17023560 (+)
dap1b dapl1 other upstream 1758518 16099271 ~ 16101642 (+)
LOC120570321 NA other upstream 1882286 15970982 ~ 15977874 (+)
galnt13 galnt13,LOC102796746 other upstream 2199146 15618514 ~ 15661014 (+)
hnrnpa3 hnrnpa3 other downstream 129429 18010757 ~ 18017413 (+)
G125079 NA other downstream 821700 18703028 ~ 18704528 (+)
LOC120570507 NA other downstream 937425 18818753 ~ 18827547 (+)
tmsb4x NA other downstream 1208090 19089418 ~ 19090785 (+)
igsf3 LOC103352919,LOC104967650 other downstream 1506687 19388015 ~ 19459274 (+)

Expression


Co-expression Network