pou2f1b (pou2f1)


Basic Information

Item Value
gene id pou2f1b
gene name pou2f1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20937568 ~ 20953570 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818303.1
aaatggcggacggAGGAGCAGCGAGTCAAGATGAGAGTTCAGGACCAGATGCTAAAGTGAATATTCAGTCAGAAACTACTAAATGTGCAATGGAAAGTGGTGACGGGAACACCGGAATCCAAATCAATGGGTTTGACTTTCAGAGGCAGACGGTGCCAACCACAAGTACAATCACCAATGCACATGCACAAGCCCTCCTCCAACAGTCTAAGTCGGAAGACTCGAGTGCGCTTCCGACCTCCGTCCAGCAGAGCGTATTGCCTCAAACCCAGCTAATGTTGGCCGGGGGACAGATTGCAGGATTGACCCTGACCCCAGCGCAGCAGCAGATGTTGATCCAGCAGGCCCAAGCTCAACTCCTGGCTGCAGCCGTGCAGCATTCAGCTAACCAGCAGAACAACACCACTGGGGCCAGCATCTCGGCCTCCGCAGCCACACCCATTACCCAGCTGCCCCTGTCACAGCCCATCCAGATCGCTTCTCAGCTACAGCAGCAGAATTTAAGTCTGCCTCAGTTTGTTCTGGTGCAGCCTGGCCACCCGATCGCCACACAACTGCAGCAACTGCAGCCCGCTCAGTTCATCATCTCACAGACACCGCATGGCCAACAGGGCATATTGCAAGCCCAGAGTCTTCTAACTCAACTACCTCAAAGCCAAGCTAACCTCCTGCCGACTCAACCATGCATCACCCTTGCAACTCAGCCTGCCACTCCAACCCGCACAACAGCAGCCACACCTATTCAGTCCCTGCCCCACAGTCAGACACCACCCAAACGGTTGGATACCCCCACTCTGGAGGAGCCTAGCGATCTGGAGGAACTGGAACAATTTGCCAAGACCTTCAAACAGAGGCGTATCAAACTGGGCTTCACgcagGGCGATGTTGGCTTGGCCATGGGGAAGCTGTATGGAAACGACTTCAGCCAAACTACCATCTCTCGCTTTGAGGCCTTGAATCTGAGCTTTAAGAACATGTGCAAACTCAAGCCATTGCTGGAGAAGTGGCTCAACGATGCAGGTGTGTCCCTGACCCCTGAAACCGCAGGTTTGGTCCTCCACACACTGTCGACCATCTCATCCCATCGCTCTCCGTCTAAACACATCGACTGTTCCAtctcctccacagctctggCATCGGGTGGCACGATCCCCATCACTTCTCTGGATGGCGGCAACCTGCTTTTCGCCAACACTTCTGCTGGTAACACGCCCAACCTGGTGACCACGCCGCTCTTCCTGAACCCCCAGAACCTGTCGCTGCTCACCAGTAACCCCGTCAGCCTGGTGTCGGCCGGGGCGGGGGGGCTGCAGGTCACTGCTGATGCTCATCATCAAACAACCAAGGCTGCTGTGCCTGTGCAAGCCTCGACCATTACCACTGCCTCTAAGGCTCAGTGAAGCCAGTCTGGCTGCATCCTGAATTAACGCCCTATTTCTTATGTCGTGCACTACTCCTTTCACACCATGTAGGGAATAGGGAGGTCTTTTGATATAGGCTCTGCGCTTCACTAACCACCCCACATTCTTTCTATTgtatctattattattatttaatccTTTTGCTGCCACCAAAAAGAAAACGACCTCAAATGAGGTTGAGgttgacttttaattttttagtgtttttttcctttatgaTTCTTGGATGTTTATTTTCCCACAAACAGTAGCCCGATGGACACTGCTGTTGGCCTGCCGCTCCTCGTGAACCTTGAAAAGTGTCCAGGAAGACAAATATCCTCGGCACCATCAAGATATTCgcatt

Function

symbol description
pou2f1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within negative regulation of transcription, DNA-templated. Located in endoplasmic reticulum and nucleoplasm. Part of RNA polymerase II transcription regulator complex.

NR:

description
PREDICTED: POU domain, class 2, transcription factor 1 isoform X4

GO: NA

KEGG:

id description
K09364 POU2F, OTF; POU domain transcription factor, class 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818303.1 True 1767 mRNA 0.53 10 20937568 20953570

Neighbor

gene id symbol gene type direction distance location
nxpe3 nxpe3 coding upstream 52306 20875392 ~ 20885262 (+)
cep97 cep97 coding upstream 66234 20865935 ~ 20871334 (+)
gpr161a gpr161 coding upstream 114407 20813487 ~ 20823161 (+)
otc otc coding upstream 124187 20809318 ~ 20813381 (+)
sytl5 sytl5 coding upstream 162913 20738792 ~ 20774655 (+)
lamp1b LOC104951941 coding downstream 17726 20971296 ~ 20976876 (+)
tfdp1a tfdp1 coding downstream 42943 20996513 ~ 21007034 (+)
LOC120569739 LOC103352901,LOC102791869,LOC102207044,LOC101487838,LOC100703644 coding downstream 55107 21008677 ~ 21013333 (+)
jam2b LOC108232408 coding downstream 71672 21025242 ~ 21034814 (+)
LOC120569870 st6gal2 coding downstream 118608 21072178 ~ 21124442 (+)
LOC120570516 NA non-coding upstream 26210 20903994 ~ 20911358 (+)
G125749 NA non-coding upstream 101814 20832494 ~ 20835754 (+)
G125738 NA non-coding upstream 112023 20795045 ~ 20825545 (+)
G125718 NA non-coding upstream 224374 20712406 ~ 20713194 (+)
G125702 NA non-coding upstream 250521 20686697 ~ 20687047 (+)
G125826 NA non-coding downstream 167 20953737 ~ 20958039 (+)
G125825 NA non-coding downstream 5137 20958707 ~ 20959962 (+)
G125892 NA non-coding downstream 237462 21191032 ~ 21191666 (+)
G125903 NA non-coding downstream 253684 21207254 ~ 21207454 (+)
G125904 NA non-coding downstream 255389 21208959 ~ 21209742 (+)
G125757 rpl24 other upstream 72126 20860152 ~ 20865442 (+)
mpc2b mpc2 other upstream 78652 20853089 ~ 20858916 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other upstream 416294 20492178 ~ 20521274 (+)
myo16 myo16,LOC103372229 other upstream 671978 20153855 ~ 20265590 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other upstream 944244 19968360 ~ 19993324 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other downstream 665778 21619348 ~ 21634757 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other downstream 701556 21655126 ~ 21691804 (+)
fbxl3a fbxl3 other downstream 1777353 22730923 ~ 22738653 (+)
G126363 lmo7 other downstream 1853623 22807193 ~ 22815102 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other downstream 2025032 22978602 ~ 23100083 (+)

Expression


Co-expression Network