lamp1b (LOC104951941)


Basic Information

Item Value
gene id lamp1b
gene name LOC104951941
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20971296 ~ 20976876 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818627.1
TAGTGGCTGCTGTTCAGCACGTGACTTTCTGGGTGTTTCTTAAAGCCGCTCTCACATGATCTTGTTGTCAGTCTCTCTGCTGTAGCTGTGGTGATAAAGTGTTAAAAGGAGAGCTAAATTAATCACACAGCTAGCATACAAAGATAACAAGTTTGAACTTACAACCAGAAACGTCAGTGGTTTTTGTTACAAAGAACAGTACTACAAACCAGTGGGCTTGAGTTTTATTTTGCCTTTGCTGTTGTTGTTACGCTGACGTTAGCCTAGCTAGCCCAACATCTgctaagctagctaactagctagccgCGTCCAggctgttgttgtgttgttgtgatttTGTCCTGACAAGAAGCTGTAGAGGAACCGGAGAAACATGAAGCAGATCAGAGGTGTCCAGTCATGGTGCCTAGGAGTAACGTTACAGTTGATTATTGCTGCCGTCCTGCACCAGGGTTTTGCTACTGTTGCGCCGCCCACAGCTGCACCGTACAAAGACCCTGGCAGACCTGAGAAAGGAAACTACCAGGTCAACGGCACCAACGGTACTGCCTGTTTACTGGCATCCATGGGTCTCCAGCTCAACATCACCTTCAACTCTGTCTCCCAGAATAAGACTGTGCAGGATGTTGTGAACATTCAGCCCAATGTGACAAAGCAGTCCGGGTCATGTGACCCAGACAACTCCTCTCTGAGTCTGTCAACGGATGCAGAGAAGACCAACCTTACCTTTTTCTTCACACTGAATACTACGTCCAATAAGTACCACCTGAGTGAAGTTTCTCTGTCAGCAGCCTGGCCAGACATGAAAGAGCCCTTCTCAACCCATAACCACAGTCTGGACTACCTGCAGGGCACCCTGGGGTACTCATACTTGTGCCGTGAGGAACAAACTCTGAATGTGGACCAGTACTTGTCCATCAACATCTTCCAGGTGCAGGTGCAGCCTTTCGGCCTGACCAAAGATCAGTTTGGAGCAGCTGAGGAATGCCAGTTGGATGAAGATGACATGTTGATCCCCATCATAGTCGGAGCGGCTTTAGCAGGTCTCGTCCTCATCGTGCTCTTGGCCTACCTCATTGGCAGGAAGAGGAGCCACGCTGGCTACCAGACCATCTGAGGTCACTTAACACTCCCAGAGGGTGCTGTCCCACCCATGAGATTAACCACTGTTTTATGAGACTTAACACTCCACCCTGTCCCCCTCTATCTCTCCATCACTCATCctccctgcctgtgtgtgtgtgtgtgtgctgttcttTGCCCTCATCAGTAACACTAGTCATTATCACTTGGTGGAGGTTGATATGCTCATTCTGAACTGACCCTTATTTATAAAATAGGGGCCTTGTTTGAAGATTGTAAAGAAATGAGGAAAGAAACGTGCTGGTACTATGTAAAGCCGGGCATGGATGTGGATCAGAGGGTTCATGAGAGTTCTCAAATTGTATTGTACTATTTATGATTTCTATAAAAGGAACTTTGAGGGATTGTGGGAGTTGAGGGAATTGCTACTGTAGCTTTTCGTATTGTTTATCTGCTTTAGGGTGACCATTTTTAGTGGTCTTGCCCTTAATGAAGTAGTATAAGTTATTATAAAGGGAATATTTCTAGCTCTTTAACTTAATCCACTTCAGACAGTAAGGAtctgatgttttgttttgtttttagcccAAGTATGCAGATTTTACTTAACATACTAAAAACACCGTAAACTAATCCTAAAAACACAGTAAACTAATCCTAAAAAGGATATGTGAGGAGTCCATTTTAAAGTAAAGATGCATTAAGGAATTTATTTTGTTCACTGGGATTAGTGATGATAGGATTCTTTCCCTTTTTAAATGTACTCAGTACATTATGTATGGAGGCTTTAGATGCAGTTGTCAGCTTTGTAGGATAATTTGTTTAGGATTTTTCACTTAATTTAAAGGAATAATTCAACTATtagggaaatatgcttatttgctttcttgccgagagtcggatgagaagatcgatacaaCTCTCGCTAaatgtgaagctacagccagcagcaggtTAGCGTAgcaaaaagactggaaacgACTAGCATAGCTCTGTCTAAAGGTAACAAATCGGCCTACCGACGtctctaaagctcactgatttacatgttatatctcgtttgtttaatccatacaaagACCAAAGTGTACCACGTTTGAAATATTTCGGCACGTAACCTCCTTAAAAACACAACGTGAAGTTTTGGCATTTCAGTTTTggtattaaacaaacaagatataagatgtttattaatgagctttagaggtgctgggaGGCAGATTTGTTACCGTTAGAcagagccatgctagctgtccctgtttcaagtctttatgctaagctaactgtctcctGGCTATATTTTCAGatttaccatacagacatgagaaCTCTAGGCACATGtgaatttcccaaaatgtcaaaactaTTTCTAAGTGATTATAGACACTTTCTGGGTTTCTGCTGTTACAATGTTCACACGCAACATAAGTTGcttaaacaaaaaacactactGTTGGCTTATGTGGATGAAAAAGCTCAGGACATCACTGTAAGGGTGTAAAAGTGTTACAGTCCACTGGGTGGTTTTGTTCGTTTTTCTTTTATTACCACACGGCTAggctgtttgttttatttttccctTAATATGGGCCCacttgggattttttttttttttctgaagggAAATAAGTTGCACTAAATTTCTAACAAAAAGCCCCATGTAATGATTTAAGTGGCCAAAATGCTCTGGTTAGTGTTCATCAGtgccttctcagctgtaacatTGATGGGGTTAAAGTAAAGCCAATACCATAGCGGTCTCATTCACTCACACTGTGACACTGTGTGCTGCCATGTTTGGGACATTTGTCTCACTCATAGCCTTCATGTACTGTTACTAGCATAAATATGCATTTTGTTAGATGTTGTTgaagaaaatatttgtttttgtatgtttgttttttttgttcttctccCTCATCTAAATATCCATGTAGTCATTTAATCAGGTTTTAATGGTTTGTTTGAACTGTTTTCTAAAGgagtaaataaaatggaatgaaCGAGA

Function

NR:

description
PREDICTED: lysosome-associated membrane glycoprotein 1-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818627.1 True 3091 mRNA 0.42 6 20971296 20976876

Neighbor

gene id symbol gene type direction distance location
pou2f1b pou2f1 coding upstream 17726 20937568 ~ 20953570 (+)
nxpe3 nxpe3 coding upstream 86034 20875392 ~ 20885262 (+)
cep97 cep97 coding upstream 99962 20865935 ~ 20871334 (+)
gpr161a gpr161 coding upstream 148135 20813487 ~ 20823161 (+)
otc otc coding upstream 157915 20809318 ~ 20813381 (+)
tfdp1a tfdp1 coding downstream 19637 20996513 ~ 21007034 (+)
LOC120569739 LOC103352901,LOC102791869,LOC102207044,LOC101487838,LOC100703644 coding downstream 31801 21008677 ~ 21013333 (+)
jam2b LOC108232408 coding downstream 48366 21025242 ~ 21034814 (+)
LOC120569870 st6gal2 coding downstream 95302 21072178 ~ 21124442 (+)
uxs1 uxs1 coding downstream 175604 21152480 ~ 21194144 (+)
G125825 NA non-coding upstream 11334 20958707 ~ 20959962 (+)
G125826 NA non-coding upstream 13257 20953737 ~ 20958039 (+)
LOC120570516 NA non-coding upstream 59938 20903994 ~ 20911358 (+)
G125749 NA non-coding upstream 135542 20832494 ~ 20835754 (+)
G125738 NA non-coding upstream 145751 20795045 ~ 20825545 (+)
G125892 NA non-coding downstream 214156 21191032 ~ 21191666 (+)
G125903 NA non-coding downstream 230378 21207254 ~ 21207454 (+)
G125904 NA non-coding downstream 232083 21208959 ~ 21209742 (+)
G125915 NA non-coding downstream 298567 21275443 ~ 21275840 (+)
G125957 NA non-coding downstream 430637 21407513 ~ 21409113 (+)
G125757 rpl24 other upstream 105854 20860152 ~ 20865442 (+)
mpc2b mpc2 other upstream 112380 20853089 ~ 20858916 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other upstream 450022 20492178 ~ 20521274 (+)
myo16 myo16,LOC103372229 other upstream 705706 20153855 ~ 20265590 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other upstream 977972 19968360 ~ 19993324 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other downstream 642472 21619348 ~ 21634757 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other downstream 678250 21655126 ~ 21691804 (+)
fbxl3a fbxl3 other downstream 1754047 22730923 ~ 22738653 (+)
G126363 lmo7 other downstream 1830317 22807193 ~ 22815102 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other downstream 2001726 22978602 ~ 23100083 (+)

Expression


Co-expression Network