clybl (clybl)


Basic Information

Item Value
gene id clybl
gene name clybl
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 23159965 ~ 23222241 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818761.1
TTGCTGCTTGCTCTGTTTCTACGTCATCGAAGAAAATATGGCGGCGCACATAACCAGAGCTGTGAAACGAATTCTTCCACAGGAGAGCGGTTGGCTCCTGCCCACAGCCTGGCAGTTGTATACCAAAGCATGGCGTTATCACCATCACTCGGCAGGCCCCTCGCTGCGCTACATACCCCGCAGGGCGGTTCTCTACTGCCCTGGCAATGATGAGCGAAAATTGAGGAAACTAGCCACGCTGGATGTCGACTGTGCGGTCTTGGACTGTGAGGATGGTGTGGCCCTCAGCAAAAAGACAGAGGCCAGGGAGACCATTCCCAGGATGTTAGCGGAACTGGACCTGGGCCGGACGGAGAAGTGTGTGAGGGTGAACTCGGTGTCCAGTGGCTTAGCGGAGGCTGACCTGCAGGTCATCCTGCAGGCTGAGGTTCTCCCTCCTGCCATCATGTTGCCCAAAGTGGAGGACATGCAGGAGGTACAGTGGTTTGTTGACAGGTTTCAGCACAACTTGAAAGGGCGGGCACTGACAGAACCCATTCGTCTGGTCACCTTTGTGGAAACCGCTGTGGGCCTGCTTAATTTTAAGGTGGTTTGTGAGGAAATCCGTCGACTTGCTCCCAGCGCCGGTCTACACCATGACGGCGTAGTGTTTGGCTCTGATGACTTCTGTGCCAGCATAGGTGCCACACGGACTAAAGATGCCAGGGAGCTCCTTTATGCAAGGCAGAAGGTGGTTGTGACCACCAAAGCGTTTGGTCTGCAGGCTATTGACCTGGTCTACATTGACTACAAAGATGTGGAGGGGCTGAGGCGACAGGCCAGAGAGGGAGCTCTCATGGGCTTTACAGgTAAGCAGGTTATCCACCCAGGGCAGATCCAGGCTGTGCAGGAAGAGTTCTCCCCCAGTCAAGAGAGGGTCCAGTGGGCCAAAGAGCTCATTGCTGCTTTTGACCAACACCAAAAGGAGGGAAAGGGTGCGTTCACCTTCCGCGGCAGCATGATTGACATGCCCTCGGTGAAGCAGGCACAGAACATCATAACGCTCTCCGTCGTGGTGCCAGAGAAATAACACGACCGGTGGGAAGAAACGGGAGGAACCGCACAACTAAACCCTGACAAGAGAAGGAAACTGGAACTGTTGCAGGTTTCATGACAAAAATAGCACTTCTTGTGAAAAAAGCCTTGTGAACTATGTTGCCTGACATAAGTGGATGGTGgaaattgtatttttaatttaagtttttaatAATTGTTGAAAGATGTTGATTAAATGACTTTGTTTGTGGTAGCAGTTGCAGTGAAGATTTACTTTTGCTGCGATGGTCCAGTTTCGTTGAGGATGATTCTGACAATATGAAATCTGCACATAGCGAGTAGCAGCAGCAGATATCTGCCTCTCAACGGAGTGTTGACGACTACTGCCCTGTGTGGCCACTTTCTTGGCACactctgcagtgtgtgtgcgcCATCATGTCATTCTCCCGTGTGTGTGCCCATGCCTCCCATCTCTCCTAGGTCATGATGAATGCTCTCCCATCTCCACGGTCCAGGCAGCTGGGCGAAAGggtaaacaaacacaacaagccactgTTGTGGATCTATTCATTAGGCCCCAGTCTTCCAGTCAGGCCTCAGCCCCCTGCCCAGGGCCTGACTCACAAACATCAAAGTCTTTctcgctttaaaaaaaaaacacagatggaAGTGCGTAAACTCGCGATTTAGCTTTTTTTGTGTCGGTCTCCTTAGTAAAGACATGCAGCTCGCCCTGTGGCAGCTGTGAGCCTGTGGTCTTGATGGAGAAGGCGTGTGGCGTCAGACACACCATGACctgtacaaaaaataaacactgcATACATGCACATGCTGCGGCAGTTTTCATTACCTGATCTCTCATTTAACACAAAGAGCTAAACTTGGATGTTCAGCTATATTGTTTCTAGATTAGAttcacagtttgtttgttttttatcagcatttaaagaaaaaaaaaaacatttcctctCTTTGATAAAAATGAACTCCTAAACAAGTTCAGTAAAGTCGTTTGTCGTGCTGTCAGAAATAAAAGTACAATGGGGCTCTGCGGAGCGCTTGTGAACGTCTGACTTCCAGAGACAGTGAAGTGGGTGTGATCTTCGAGTGAAACAGATTAGTGGCCATGTTGCTCCAGCAGACCAGGACCGAGGCTTTGTCTCTCTGACTGTGGATGGGAGGATAATTGCGGGGGTGTTGAATGGTTAATAGTGCCATTGGTGACCATGGTAATGAAAGGCACCATACCTCCCCTACCCCACCTCATCCActcatctatctctctctctctcgccctccctctctctctctctctctcgctctagTACTGTATGATCTATTGTGTCTGGGGCAGGTCTGTGGTCTTTGCCAGGCCAGGCCAGACAAAAAGATCGAAACCACTCCTGTGCCCAGCCAAAGACCCGAACAGTAAGCTGTCTCTTTGGCATTTGGCCACATATTTCCCTCACCCCTGGCTCACTTTTTCTGTCGGGAATTCACATGcagcttgtttgtttgttttcacccAATCTACCATTGTACCCTGAGGTTGGTGGACAAAACCAATAATACGTATGACTTTCTTTAAATGAATAGAGAAACGTTATTTGGTTAGAGCCATTTTGCAAAGCTCTGCCGATCTTTAAAAATCGATGTCGGACAAGCCGTATCTCCAACTTGATACTTGGTATAATATGTTAAAGAGATGTTTCTTTGACCTTGTCAATTACAGAATGTGTAGACTGTGAGTAGCCTGTACTGATTGCTTCAATCATATTGTATCTTATTTTGGGGTTATGTCATTAACACGGGTTATGCAGATGATTTTGATCAAACTTTGAAACACTTTAACATTGATATTTTAAAGATTCATtcatttgtcatttgttgtAGCTAAGTTGTGTTCTAATCCCATCTGAAATGAATGCAGAAAAAGTTGCAGAATGTGAAGTGCATTCAAAATTCTTgaaacacatacaaataaagAGCTGTTTGACAGCTTGATTTAAAGTGCGATGCTAATTATTGTCTCCATCAATAAATGTTAAAATTTAAA

Function

symbol description
clybl Predicted to enable (S)-citramalyl-CoA lyase activity. Predicted to be involved in regulation of cobalamin metabolic process. Is expressed in brain. Orthologous to human CLYBL (citramalyl-CoA lyase).

NR:

description
citrate lyase subunit beta-like protein, mitochondrial isoform X2

GO:

id name namespace
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0009346 citrate lyase complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008815 citrate (pro-3S)-lyase activity molecular_function

KEGG:

id description
K11390 CLYBL; citrate lyase subunit beta-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818761.1 True 3091 mRNA 0.47 8 23159965 23222241

Neighbor

gene id symbol gene type direction distance location
klf12b klf12 coding upstream 199211 22914201 ~ 22960754 (+)
tbc1d4 tbc1d4 coding upstream 272577 22856950 ~ 22887388 (+)
commd6 commd6,LOC102792157 coding upstream 304422 22850941 ~ 22855543 (+)
kctd12.1 kctd12 coding upstream 405361 22753105 ~ 22754604 (+)
zgc:162944 LOC104958623,LOC102208337,LOC101482774 coding upstream 412447 22744460 ~ 22747518 (+)
zic2a zic2 coding downstream 21391 23243632 ~ 23247660 (+)
itgbl1 itgbl1,LOC102787049 coding downstream 272700 23494941 ~ 23538664 (+)
cfap97d2 NA coding downstream 435013 23657254 ~ 23663191 (+)
cdc16 cdc16,LOC102786741 coding downstream 441099 23663340 ~ 23677275 (+)
upf3a upf3a,LOC104960519 coding downstream 457417 23679658 ~ 23689877 (+)
LOC120569671 NA non-coding upstream 190795 22966626 ~ 22969170 (+)
G126358 NA non-coding upstream 361653 22797901 ~ 22798312 (+)
G126352 NA non-coding upstream 389045 22770710 ~ 22770920 (+)
G126290 NA non-coding upstream 501073 22657517 ~ 22658892 (+)
G126280 LOC104958628,LOC108232414,LOC106098708 non-coding upstream 520203 22639470 ~ 22639762 (+)
G126439 zic5,LOC102789084 non-coding downstream 10626 23232867 ~ 23236823 (+)
G126447 NA non-coding downstream 130336 23352577 ~ 23352820 (+)
G126463 nalcn non-coding downstream 177650 23399891 ~ 23400386 (+)
G126515 NA non-coding downstream 482144 23704385 ~ 23704642 (+)
G126516 NA non-coding downstream 482702 23704943 ~ 23705702 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other upstream 59882 22978602 ~ 23100083 (+)
G126363 lmo7 other upstream 344863 22807193 ~ 22815102 (+)
fbxl3a fbxl3 other upstream 421312 22730923 ~ 22738653 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other upstream 1468161 21655126 ~ 21691804 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other upstream 1525208 21619348 ~ 21634757 (+)
cwc22 cwc22 other downstream 961708 24183949 ~ 24199835 (+)
sestd1 sestd1 other downstream 1054916 24277157 ~ 24298218 (+)
fzd5 LOC104950716,LOC108238837 other downstream 1150230 24372471 ~ 24394985 (+)
cacnb4a cacnb4 other downstream 2407866 25630107 ~ 25664427 (+)
G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 other downstream 2894747 26116988 ~ 26129879 (+)

Expression


Co-expression Network