tnfsf13b


Basic Information

Item Value
gene id tnfsf13b
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20145083 ~ 20149050 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819092.1
TTTCACTCTGCAACGATCACATGGGTTATTTCTTAGAATGTGGATAAGATGAGATGTGTTCTATCATTTTGAGGGAGCAAGAtgaagagaaaggggagagagatttGTCAAGGCTTCTGGTCAGGCAGGAAGCTGAGTGTGGTTAGCTGAGTGTAACCGTAGAGGGGAAGCTGTTTTGCCCTTTTTTGTACAGTATTTAATCTGCGTAGTCACTCAGACTCGACTGGAACCGTCTACTGAAGGACAAAGCGAGAGTTAGGGAAGTCAGTGGAGCTTTTAGACAGACATTAAGGTAACGCTAGAGGCTTTATAGACAACATTGATGACAGAAGCAAACATCAACCATTGCTAACCCCAGTCTGTCAGAAGAGAGGCAGCGTAGTTCAAGCCTAATACTTGTGATGCTGCCAGTGTGAGCTTTCTGGAGATTGTATGGGCCCCGCGATGGATTGTGTGGAGCCTGGGACTGGAAAAAAGACAGGTGAAGGGAGGCTGTCCTGGCCAGTTTTCCTGCTGACGCTAGCTGCTGtcacctcctcttctctttcagcTTTGTCCCTGTACCAACTGGTGGCCCTCAGAGCTGAGGTAGAGGGGCTCAAATCAGAGGTTTGTCGCAGGAGAGAAGAGGGGCGAGAGGCCAAGCATGCAGGCCAGactGAGAATATCAGTTGGAGAAGCAGCCAAGAGTCCCTGCACCAACCTGCGTCTCAACAAACTTTCACCCTGATAAGGAGGAGAAGATTGGTCCCTGGATCAGAGAAAATAGTTTCTCAGCCTTGCCTGCAGTTGCTGGCAAACAATAGCAGGAAAACCTTCCAGAAAGAATATAACGCGGAGCCGCACACAGGTATCCCCTGGCAGGCTGGGCTGAGGAGAGGCTCTGCCCTGGAGGAAGACGGAGACAGCATGTTAGTCAGAGAGGAGGGCTTCTACTTTGTGTACAGTCAGGTCTACTACATGGACAGCACCTTTGCAATGGGTCACGTGGTGATCCGGAGGAAGAGGAATGTGGTGGGAGACGAGCCTCAGTATGTGGTCTTGTTCCGCTGCATCCAGAATATGAACCCCGTTCACCCTTACAACACCTGCTACACAGGAGGTATTGTGAAGCTGGAGGTCGGGGACCACTTGGAGCTACTGATCCCTCGTTCCACAGCCAACGTGTCCCTATATGGAGATGCCACCTTTATGGGTGCTGTGAAACTGGCTTAAAAACGTGTCACCTCATTTCGGACCCAGGGACGCTGTTGTGGTGGGAAAGAGGTGCCATAATGGGAGCAAGAATGGCACAGTTCTGGTGTCCTCGCCTGACCTATGAGGTGAGAAGAATACAGGAAGCAGACATTTCAGTACCGCCTGAATGACAGGCTGTTTGACTCCTAGCTTGTTCAGCCTGATGGGAAATGCGGGGGACTATGAGTTGATGTCTTTACTTGTAAAAATACATCCACCTAGCTACAGCTGTATTATTTTCATTTCTACAAAACATCATGACAAAAattgtaataatataataaagtcctttttttccctcaaaTAATCACCAACACATGGCAAGATGTAACATGTGAGACTTGACTTTGTCTGACTTTAAAGAGATGTCTTACTTGTGTGTAATTCTTATGTTTTGATCAATAATCTTTCCTACTATAGCAGCAACATTACTGAAATTGTTCTCTACTGCTTTGTTATTTTAGATATTTGAACATAATTCATCTGAATACCATAACCTGATTTACCTAAGTTTACCTATATATGTCTAACTGATTAGAAAATCAGATTCAATAAAGTGACAGTTCTTGCACAAGGAA

Function

NR:

description
tumor necrosis factor ligand superfamily member 13B

GO: NA

KEGG:

id description
K05476 TNFSF13B, TNFSF20, CD257; tumor necrosis factor ligand superfamily member 13B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819092.1 True 1814 mRNA 0.46 6 20145083 20149050

Neighbor

gene id symbol gene type direction distance location
abhd13 abhd13 coding upstream 2584 20137304 ~ 20142499 (+)
si:ch73-390b10.2 LOC102224404,LOC103392127,LOC106959393,LOC103369897,LOC103459619,LOC107099852,LOC100701210 coding upstream 191885 19944868 ~ 19953198 (+)
si:ch211-214p13.8 NA coding upstream 216137 19924998 ~ 19928946 (+)
si:ch211-214p13.9 NA coding upstream 224663 19916092 ~ 19920420 (+)
gsk3ba gsk3b coding upstream 247795 19853302 ~ 19897288 (+)
col4a2 col4a2,LOC107557913 coding downstream 240468 20389518 ~ 20471524 (+)
naxd naxd,LOC102782328 coding downstream 329661 20478711 ~ 20485061 (+)
ing1 ing1 coding downstream 336176 20485226 ~ 20490509 (+)
sik1 LOC103352856,LOC102193135,LOC102291704,LOC101480385 coding downstream 395327 20544377 ~ 20554354 (+)
gabpa gabpa coding downstream 492162 20641212 ~ 20649166 (+)
G125504 NA non-coding upstream 117102 20024263 ~ 20027981 (+)
G125501 NA non-coding upstream 128829 20016021 ~ 20016254 (+)
G125482 NA non-coding upstream 202236 19942230 ~ 19942847 (+)
G125480 NA non-coding upstream 207835 19930932 ~ 19937248 (+)
G125465 NA non-coding upstream 237261 19907587 ~ 19907822 (+)
G125547 NA non-coding downstream 79678 20228728 ~ 20269128 (+)
G125577 NA non-coding downstream 181337 20330387 ~ 20330659 (+)
G125626 NA non-coding downstream 342611 20491661 ~ 20492159 (+)
G125662 NA non-coding downstream 444990 20594040 ~ 20631194 (+)
G125668 NA non-coding downstream 454641 20603691 ~ 20611664 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other upstream 151759 19968360 ~ 19993324 (+)
igsf3 LOC103352919,LOC104967650 other upstream 685809 19388015 ~ 19459274 (+)
tmsb4x NA other upstream 1054298 19089418 ~ 19090785 (+)
LOC120570507 NA other upstream 1317536 18818753 ~ 18827547 (+)
G125079 NA other upstream 1440555 18703028 ~ 18704528 (+)
myo16 myo16,LOC103372229 other downstream 4805 20153855 ~ 20265590 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other downstream 343128 20492178 ~ 20521274 (+)
mpc2b mpc2 other downstream 704039 20853089 ~ 20858916 (+)
G125757 rpl24 other downstream 711102 20860152 ~ 20865442 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other downstream 1470298 21619348 ~ 21634757 (+)

Expression


Co-expression Network