zic2a (zic2)


Basic Information

Item Value
gene id zic2a
gene name zic2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 23243632 ~ 23247660 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819120.1
TTCCAGTTAAAGGGGGCGGAAGAAGAGGTTGAGCCAGTCCACGGAGAAACAGGGACCCTCCGCGATAAACACAGGCGAGCcagagaaataaatacatacccAATCGGCACAGCGATTTTTGAGATGATCCAGCTACTCTCGGTCTGTGCACGCAGAGGACACCTAGTAAGATAATTATTTAATTCTTCGAGTGCATTTTAACGCAGCCAACTGTCGCAGTCAATAGAAGAGGACACGAGGAAACTCTTCACTTCATTGCATTTGGATTTTTGAGGCACAAGTTAACTATAAGTAAATTCAGTGTTCGATAAGCCGAGctggtttttttttcctcatgagCGGAGCAGCGTTTTGAATCACGCCTGATATGGTGTTTCCAAGGTTGGAAGTTGAATTGTTGCTTACCAGCATAAAcatttgattttgttgtttaactTATTCGCTGCAGCCCTGCGCtgatttaaacaaaaataataataataataaaaaaaaaataaacaaagaaatcGCTTTCTGAAATAATGTTGCTGGATGCTGGTCACCAGTTCCCCGGACTGGGAGTGGGGTCATTTGCCAGGCATCACTCAGCGAGCGAGATGCAGGAGAGAGACTTGAGTTTGGCACAAAATAGCTTTGTAGACTCCGCACACATGGGTGCGTTTAAGCTGAACCATGATCTCTCTCCGGGACAGAGCTCTGCCTTCACCAGCCAGGCGCCGGGCTACCCCGCTGCGGCTCTGGGAGCTCACGCCGCCCATGTCTCGTCGTATGCAAGCTCTCCTTTCAACTCAACCAGGGACTTTCTCTTTCGTAGTCGTGGCTTCGGAGAATCCTCTCCGGCTAGCAGCCAACACACTATTTTTGGCCCCACGGCGGGATCCCTTCATCACTCCCACACAGACACTCAAGGCCACATTCTGTTCCCCGGGATCCACGACCAACATGGGTCCCACGGTTCCCCGAATGTCCTCAACGGGCAAATGAGGCTCGGACTACCCGGAGAAGTTTTCGGACGCTCCGACCAGTACCACCAGGTTTCCAGCCCGAGGACCGACCCGTACTCTGCAGCGCAGCTCCACAACCAGTACGGCTCCATGAATATGAACATGGGGATGAACATGGCAGCCCACCACCACCCCGGTGCCTTTTTCCGCTACATGAGGCAGCAGTGCATCAAGCAGGAGCTCATCTGCAAGTGGATCGACCCCGAGCAGCTCAGCAATCCAAAGAAGTGTTGCAACAAAACTTTTAGCACCATGCACGAGTTGGTCACGCACGTCTCGGTGGAGCATGTCGGTGGACCGGAGCAGACCAACCACGTCTGTTTCTGGGAGGATTGCGCCCGGGAGAGCAAACCGTTCAAGGCGAAATACAAACTGGTGAACCACATTCGGGTGCACACCGGGGAGAAGCCTTTTCCATGCCCCTTCCCTGGCTGTGGAAAGGTCTTCGCACGGTCGGAAAACTTGAAGATAcacaagagaacacacacagGAGAGAAGCCGTTCCAGTGTGAGTTTGAGGGCTGCGACAGAAGGTTTGCAAACAGCAGCGACCGAAAGAAACACATGCACGTTCACACGTCGGACAAGCCTTATCTCTGCAAAATGTGTGACAAGTCCTACACACATCCCAGCTCCCTACGAAAACACATGAAGGTACATGAAGCTTCTCCACCAGCATCAGACTCATCACCAGCAGCCAGCTCTGGTTATGAATCCTCCACACCTCCAGGCCTGGTGTCTCCCACCACCGAGACCCAAAGCAACACCACCCTGTCCCCAGCCTCAGCTGTGCACAACACCACCAGCCACAGTGGCCTATCCTCCAATTTCAGTGAATGGTATGTTTAGGACTAAGCTGAAATGAAGCAACACACACTCATTTCATAGCACTGGACCATTCAGCAGGAGATTGGGACACGTGCACACAAGAGGCACacaaacatttgtttatttttattatttttgatttGCCAGGGAATATGACCATTACCACAGAGGAAATTATGTATAATAGTCGCAGTGTATTTCATATTGTAAATAATTACTAAAAGCCCACTTTCCCATTGGTTGTGATAGTTTGTCAGTCTTTGGTGTATAGATGTTCCTTCAATGGTAGCTATTTCTCTAACTGGACTTTTAGTGCACATATTACGATAAAATTGTACTATACTGTTGAATATTGTGATCCTAAGGCAAATTGATTGTACTATACTAAACATCTATAAACTGGAAAGAGTGCCAAAGTTAACATTTAACTCAAACAGACCACAATATTATGCTTGTGAATGTATATTTTAGTTTGCTGGGCTTAACTTGTGATGTTTTGTGCTTTGCAAGTTTGAATTGTGAAATACTATCTGGAAGATTGTGAGGAAAATAAACGTTGTGCCGTTCAATTTTCTGTAAACCCTTCCTTTTGTAAATATCAACTGCCATATTTATCCATTTGTAATTAAATTATGGTATTTACTTGCTACAGATGAAACAGTATTTATAAAGAATGTTTCTTTACTataaatatgtaaaattacGAGCTAAACCTGGGCAGTTGTTTCGTTATGTGCTTTTGTTCAAAGTTTTAAGAGGTGTTTTCTTCCTTATTGTGATAAGAATTTTACTGCATACAAATATAATAAAAGGTGTTGCAAGTGCTaaattt

Function

symbol description
zic2 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin DNA binding activity. Predicted to be involved in nervous system development; regulation of transcription, DNA-templated; and visual perception. Predicted to act upstream of or within several processes, including cilium organization; neural tube closure; and positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry. Located in nuclear body. Implicated in holoprosencephaly and holoprosencephaly 5.

NR:

description
PREDICTED: zinc finger protein ZIC 2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K06235 ZIC2; zinc finger protein ZIC 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819120.1 True 2664 mRNA 0.46 3 23243632 23247660

Neighbor

gene id symbol gene type direction distance location
clybl clybl coding upstream 21391 23159965 ~ 23222241 (+)
klf12b klf12 coding upstream 282878 22914201 ~ 22960754 (+)
tbc1d4 tbc1d4 coding upstream 356244 22856950 ~ 22887388 (+)
commd6 commd6,LOC102792157 coding upstream 388089 22850941 ~ 22855543 (+)
kctd12.1 kctd12 coding upstream 489028 22753105 ~ 22754604 (+)
itgbl1 itgbl1,LOC102787049 coding downstream 247281 23494941 ~ 23538664 (+)
cfap97d2 NA coding downstream 409594 23657254 ~ 23663191 (+)
cdc16 cdc16,LOC102786741 coding downstream 415680 23663340 ~ 23677275 (+)
upf3a upf3a,LOC104960519 coding downstream 431998 23679658 ~ 23689877 (+)
p2ry8 p2ry8,gpr82,LOC103134757 coding downstream 443176 23690836 ~ 23695194 (+)
G126439 zic5,LOC102789084 non-coding upstream 6809 23232867 ~ 23236823 (+)
LOC120569671 NA non-coding upstream 274462 22966626 ~ 22969170 (+)
G126358 NA non-coding upstream 445320 22797901 ~ 22798312 (+)
G126352 NA non-coding upstream 472712 22770710 ~ 22770920 (+)
G126290 NA non-coding upstream 584740 22657517 ~ 22658892 (+)
G126447 NA non-coding downstream 104917 23352577 ~ 23352820 (+)
G126463 nalcn non-coding downstream 152231 23399891 ~ 23400386 (+)
G126515 NA non-coding downstream 456725 23704385 ~ 23704642 (+)
G126516 NA non-coding downstream 457283 23704943 ~ 23705702 (+)
G126519 NA non-coding downstream 462743 23710403 ~ 23711118 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other upstream 143549 22978602 ~ 23100083 (+)
G126363 lmo7 other upstream 428530 22807193 ~ 22815102 (+)
fbxl3a fbxl3 other upstream 504979 22730923 ~ 22738653 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other upstream 1551828 21655126 ~ 21691804 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other upstream 1608875 21619348 ~ 21634757 (+)
cwc22 cwc22 other downstream 936289 24183949 ~ 24199835 (+)
sestd1 sestd1 other downstream 1029497 24277157 ~ 24298218 (+)
fzd5 LOC104950716,LOC108238837 other downstream 1124811 24372471 ~ 24394985 (+)
cacnb4a cacnb4 other downstream 2382447 25630107 ~ 25664427 (+)
G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 other downstream 2869328 26116988 ~ 26129879 (+)

Expression


Co-expression Network