LOC120569671


Basic Information

Item Value
gene id LOC120569671
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22966626 ~ 22969170 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640940.1
GTCGGCTGTCAGTGGCGCGGTGGTTGTATGAAGAAACTGCGCGTCCTGCCCCGGAGCAACCCAAACGTTATTCCTCACGGCAGCGGCCATAAAAGCAGAGGTGTATGAAGTACTACCCTATGTCGGTGATTGTGTCAGTGCAACATGCTGGAACTGGAAACACAGGTCTTTGCTGTCCAGGCCTCTCAGCTGTGAAACTTCATGACCGAGGATCAAAGTCTTCTTATGAAATCCCTCCTCAAAACTAACTTTTATCTCATGGCCTTCTCCTAACTCACTGTAATTTGTTAGATTTGTTTTAATCATGATATCATTTTACTTATTATAATTTAAattcttattttattctttttttgttgttgttcttctgtTAATCCTTGTTTTGCTGCAAAGCACTTTGTAATGTTTTGGAAACATGCATTATAAATGCATTTACATTATCACCATTATTTGATATTGTGTTTCTACTTCTACTAATTATTTTTGATTATGTGATGATATTTTTTCGGGTGCCACACAATAGAAATTCTTCAAAGCACTAATGTTATCCAAATGAGCGTTCACCAAGAAAGTGCTCACATGTTCATATTTTACACGATgcagtcaaaaaaaaaacggaGACATATTCAAATGACTGCTGATCATCCAATTAGGGGCTGATTGATTGCATGTCATGTGCTGACCTTTCACAGTGCAATTTAAATCCATGGATGTCTCAGCTCCAAGAGGAGCAACTGTCATTCTTGGCCGTGGCTCTTCCTGCACAGCGAATGTGAGCCGAGCCCTCCTCCATATCCCCCGTATTAAAACCTCACAATATGCCCAACAACTGCACAGCGGAGGAGAGAGAATGCACGGTATGTGCTTACAGCATCAcaactcctctctcctctcacatGGACTAATATGGCCAAGCCAAGAGGGGATAGGACAATAAACACATAGAGCACATTGCTACTGTAAGCAcagtgtgcttttattt
>XR_005640941.1
GTCGGCTGTCAGTGGCGCGGTGGTTGTATGAAGAAACTGCGCGTCCTGCCCCGGAGCAACCCAAACGTTATTCCTCACGGCAGCGGCCATAAAAGCAGAGGTGTATGAAGTACTACCCTATGTCGGTGATTGTGTCAGTGCAACATGCTGGAACTGGAAACACAGTGCAATTTAAATCCATGGATGTCTCAGCTCCAAGAGGAGCAACTGTCATTCTTGGCCGTGGCTCTTCCTGCACAGCGAATGTGAGCCGAGCCCTCCTCCATATCCCCCGTATTAAAACCTCACAATATGCCCAACAACTGCACAGCGGAGGAGAGAGAATGCACGGTATGTGCTTACAGCATCAcaactcctctctcctctcacatGGACTAATATGGCCAAGCCAAGAGGGGATAGGACAATAAACACATAGAGCACATTGCTACTGTAAGCAcagtgtgcttttattt

Function

GO: NA

KEGG:

id description
ko00590 Arachidonic acid metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640940.1 True 982 lncRNA 0.41 3 22966626 22969170
XR_005640941.1 False 455 lncRNA 0.50 3 22966626 22969170

Neighbor

gene id symbol gene type direction distance location
klf12b klf12 coding upstream 5872 22914201 ~ 22960754 (+)
tbc1d4 tbc1d4 coding upstream 79238 22856950 ~ 22887388 (+)
commd6 commd6,LOC102792157 coding upstream 111083 22850941 ~ 22855543 (+)
kctd12.1 kctd12 coding upstream 212022 22753105 ~ 22754604 (+)
zgc:162944 LOC104958623,LOC102208337,LOC101482774 coding upstream 219108 22744460 ~ 22747518 (+)
clybl clybl coding downstream 190795 23159965 ~ 23222241 (+)
zic2a zic2 coding downstream 274462 23243632 ~ 23247660 (+)
itgbl1 itgbl1,LOC102787049 coding downstream 525771 23494941 ~ 23538664 (+)
cfap97d2 NA coding downstream 688084 23657254 ~ 23663191 (+)
cdc16 cdc16,LOC102786741 coding downstream 694170 23663340 ~ 23677275 (+)
G126358 NA non-coding upstream 168314 22797901 ~ 22798312 (+)
G126352 NA non-coding upstream 195706 22770710 ~ 22770920 (+)
G126290 NA non-coding upstream 307734 22657517 ~ 22658892 (+)
G126280 LOC104958628,LOC108232414,LOC106098708 non-coding upstream 326864 22639470 ~ 22639762 (+)
G126267 NA non-coding upstream 346018 22616311 ~ 22620608 (+)
G126439 zic5,LOC102789084 non-coding downstream 263697 23232867 ~ 23236823 (+)
G126447 NA non-coding downstream 383407 23352577 ~ 23352820 (+)
G126463 nalcn non-coding downstream 430721 23399891 ~ 23400386 (+)
G126515 NA non-coding downstream 735215 23704385 ~ 23704642 (+)
G126516 NA non-coding downstream 735773 23704943 ~ 23705702 (+)
G126363 lmo7 other upstream 151524 22807193 ~ 22815102 (+)
fbxl3a fbxl3 other upstream 227973 22730923 ~ 22738653 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other upstream 1274822 21655126 ~ 21691804 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other upstream 1331869 21619348 ~ 21634757 (+)
G125757 rpl24 other upstream 2101184 20860152 ~ 20865442 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other downstream 9432 22978602 ~ 23100083 (+)
cwc22 cwc22 other downstream 1214779 24183949 ~ 24199835 (+)
sestd1 sestd1 other downstream 1307987 24277157 ~ 24298218 (+)
fzd5 LOC104950716,LOC108238837 other downstream 1403301 24372471 ~ 24394985 (+)
cacnb4a cacnb4 other downstream 2660937 25630107 ~ 25664427 (+)

Expression


Co-expression Network