XLOC_004860 (cyth1b)


Basic Information

Item Value
gene id XLOC_004860
gene name cyth1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 34051434 ~ 34192955 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009594
CAGTAGACTGCAGCATTCATTAACATGGTGTTGTAAATTGTCTACAGTATGCAGCATAACACACTATAGATTGGTTAAAACAAagtatagtatattttcatgtgaggCTGCGTGTGAATGGAAAAAGGGCCCTCTTTTCAGTCTCTCAAGAGGTTGGGGAGACTCCTGCTGGACAGAATTAAAACTGTCGACCGGATAAGACGGAGAATTTACTAAAAATCGACCTATCAAATGGTGACAAGAATAATAAAGCGAATCAAACGGTGCTTAGCATTCAATGATACTAACGCTAAGTAACAGATGTGTACGTTATTATGTATCAACGCCCTGCATAGGCTGTATTTTGAGGAAGGTTTTAGCACTCAAGATATGCTGTCTATGTAGTCGACTCATTAGGTTCTTTAGACACGGCCTCTGTGTTTAGTTCACCGTGAGAAAAGTAACCTggaagagggaaaaaaagaacAGCAAAACAGCGCGACAGACAGTGATGTTGAGTGTGTAAAGTGGAGGAAGATCATCAGTGTGAAATACCGCTGCAGTATGGAGGCGGACAATTACGTACCGGACGACCTGACGCCAGAGGAGAAGCAGGAGCTGGAGAACATTAGGAGACGTAAACAGGAGCTGCTGGAGGACATACAGCGGCTCAAGGATGAGATAACAAAGGTGACCAATGAGATCGAATGTCTTGGCTCCACTCAAGAAAGAATAAACATGCAGCGGAGTAAGCAGATGGCTATGGGCCGCAAGAAATTTAACATGGATCCCAAAAAGGGGATTCAGTTCCTCATCGAGAACGAGTTGCTGAAAAACACTTGTGAAGATATTGCTCAATTCCTCTACAAGGGTGAAGGGCTCAACAAGACCGCCATCGGAGATTATCTGGGTGAAAGGGATGAGTTTAATATTCAGGTTCTTCATGCCTTTGTGGAGCTTCACGAGTTTACAGATCTCAACCTGGTTCAGGCTCTCAGGCAGTTCTTGTGGAGCTTCAGGTTACCGGGTGAAGCTCAGAAGATCGATCGAATGATGGAGGCTTTTGCTCAGCGTTACTGTCAGTGCAACCCTGGTGTCTTTCAGTCCACagatacaTGTTATGTTCTCTCATTCGCAATCATCATGTTGAACACAAGTCTGCACAACCCCAATGTGAAGGACAAGCCGTCTGCAGAGAGATTCATATGCATGAACAGAGGCATCAATGATGGAGGAGACCTGCCTGAAGACCTGCTCAGAAACCTGTATGAGAGCATTAAGAATGAGCCCTTCAAGATCCCTGAAGATGACGGAAACGACCTCACACACACCTTCTTCAACCCAGACCGTGAGGGTTGGCTGCTCAAACTGGGTGGACGAGTAAAGACCTGGAAGAGACGGTGGTTCATCCTGACTGACAACTGTCTGTATTACTTTGAATACACCACTGATAAAGAGCCAAGAGGAATCATTCCTCTGGAAAACCTCAGTATTAGGGAAGTGGAGGACTCTAAGAAGCCGAACTGCTTTGAGCTGTTCATCCCAGACAACAAGGATCAGGTGATCAAAGCGTGTAAGACTGAAGCTGACGGTCGAGTGGTGGAGGGAAATCACACTTTCTACCGTATCTCAGCGCCAACAACAGAGGAGAAAGAAGACTGGATCAAGAGCATCAAATCCGCCATTAGCAGAGACCCATTCTACGAGATGCTGGCGGCGCGGAAGAAGAAAGCCTCGTCTTTAAAGAGACAGTAG
>TCONS_00009595
CTGTGTTTAGTTCACCGTGAGAAAAGTAACCTggaagagggaaaaaaagaacAGCAAAACAGCGCGACAGACAGTGATGTTGAGTGTGTAAAGTGGAGGAAGATCATCAGTGTGAAATACCGCTGCAGTATGGAGGCGGACAATTACGTACCGGACGACCTGACGCCAGAGGAGAAGCAGGAGCTGGAGAACATTAGGAGACGTAAACAGGAGCTGCTGGAGGACATACAGCGGCTCAAGGATGAGATAACAAAGGTGACCAATGAGATCGAATGTCTTGGCTCCACTCAAGAAAGAATAAACATGCAGCGGAGTAAGCAGATGGCTATGGGCCGCAAGAAATTTAACATGGATCCCAAAAAGGGGATTCAGTTCCTCATCGAGAACGAGTTGCTGAAAAACACTTGTGAAGATATTGCTCAATTCCTCTACAAGGGTGAAGGGCTCAACAAGACCGCCATCGGAGATTATCTGGGTGAAAGGGATGAGTTTAATATTCAGGTTCTTCATGCCTTTGTGGAGCTTCACGAGTTTACAGATCTCAACCTGGTTCAGGCTCTCAGGCAGTTCTTGTGGAGCTTCAGGTTACCGGGTGAAGCTCA
>TCONS_00009596
GAGGGCTTCGCGCAGAGACATCCGGTCTCTTCTGGAACAGTGGATACTTTCTAACGACCTTTTCAGTTCATGGTGTTGTTCAAAACAGTGAGTGAACAGGTGAAAGTGTGAGGTTTGTTAAACCGCCAGCAGCTCATTTACTCCGAATCACAGGATCAGCACATGAGCTCGTGTGAAGCGCAGTGATCATGGTGCTGAAATCAGATGATGAAATCGTACCGGACGACCTGACGCCAGAGGAGAAGCAGGAGCTGGAGAACATTAGGAGACGTAAACAGGAGCTGCTGGAGGACATACAGCGGCTCAAGGATGAGATAACAAAGGTGACCAATGAGATCGAATGTCTTGGCTCCACTCAAGAAAGAATAAACATGCAGCGGAGTAAGCAGATGGCTATGGGCCGCAAGAAATTTAACATGGATCCCAAAAAGGGGATTCAGTTCCTCATCGAGAACGAGTTGCTGAAAAACACTTGTGAAGATATTGCTCAATTCCTCTACAAGGGTGAAGGGCTCAACAAGACCGCCATCGGAGATTATCTGGGTGAAAGGGATGAGTTTAATATTCAGGTTCTTCATGCCTTTGTGGAGCTTCACGAGTTTACAGATCTCAACCTGGTTCAGGCTCTCAGGCAGTTCTTGTGGAGCTTCAGGTTACCGGGTGAAGCTCAGAAGATCGATCGAATGATGGAGGCTTTTGCTCAGCGTTACTGTCAGTGCAACCCTGGTGTCTTTCAGTCCACagatacaTGTTATGTTCTCTCATTCGCAATCATCATGTTGAACACAAGTCTGCACAACCCCAATGTGAAGGACAAGCCGTCTGCAGAGAGATTCATATGCATGAACAGAGGCATCAATGATGGAGGAGACCTGCCTGAAGACCTGCTCAGAAACCTGTATGAGAGCATTAAGAATGAGCCCTTCAAGATCCCTGAAGATGACGGAAACGACCTCACACACACCTTCTTCAACCCAGACCGTGAGGGTTGGCTGCTCAAACTGGGTGGACGAGTAAAGACCTGGAAGAGACGGTGGTTCATCCTGACTGACAACTGTCTGTATTACTTTGAATACACCACTGATAAAGAGCCAAGAGGAATCATTCCTCTGGAAAACCTCAGTATTAGGGAAGTGGAGGACTCTAAGAAGCCGAACTGCTTTGAGCTGTTCATCCCAGACAACAAGGATCAGGTGATCAAAGCGTGTAAGACTGAAGCTGACGGTCGAGTGGTGGAGGGAAATCACACTTTCTACCGTATCTCAGCGCCAACAACAGAGGAGAAAGAAGACTGGATCAAGAGCATCAAATCCGCCATTAGCAGAGACCCATTCTACGAGATGCTGGCGGCGCGGAAGAAGAAAGCCTCGTCTTTAAAGAGACAGTAGAAACACTTCAGCCCGAACATGGACCTGGAAAAAGGGGCGAAATCTCAACGGAAGCCATAAACGCTGGACTGGATTGTTTTTATCTCAGGAATGAAGCAGGTGGTTTTTCTGGGGAAGTCTGACATTAGTGTTTGTTTCATCATCTGGAATCAGCGGGTCTGACTGAATGTGGCGTCTCATCCTCCATTTCTGTGCTTTCATACCTATAAATGCTGACTCCGCACCTATTTTTACACTGctatgtactgtaaatattcgGAAGGGTCGCTTTTGCGATTCATTCATGATCTGctgttatatttatatctattttttggTTGTTCTTGAATAGACTTTTTCATGTTTTGCCAAAGTTTGTCTTTCAGTCTCAATCCGAGTCTGATTTCTGAAGTTGAGTTTTTAATTTGAATGCTGTTTATTTGGCTTaaacagtgttttgttttattttgatcatcatcatcatcatcgttcgTTTAACTCATAGGTGGCCTTTATGAAAGACTGAAATCCAGAAACATTTCAGTAAGTTGCTTCATATTTATGGAACTCCTTCAAAATGAAACTACTGACTTGAGAGCTTATTTTactatgttttgtattttacaaaCGTTAATGTGTTGGATGACTGAACGTATCTGAAAtctccccccctttttttttttttgctttgtatgCACTGGTCATTTGAGAGAAGActcttaaatattaatttatcgATGCTGTACATATTTAAACTTAtaggttgttttattttttatcgtCCAAATATACTTTGTGCAAAAGTAAACCGGGTGAAGAAAAGGTTTtgacctgcaaagtttagttcacCATTGTATGTAATCTTGtgcttacaataaaaaaaatgtttgagcttt
>TCONS_00009597
AGAGACAGCAGAACAGTCTGCAACACAAAATCTTCCGGTAGCATCACTTCCACTAAGACATGAAGCTCAGGACGTTACTGGAAGATTCCGGGAGTTAGACAGCTTCTTTCTGAACGACAACAATGCTTTAAAGTGCATTAATTCTCTAAATGGATCAAAAGAACTGCCAAACTGGAATTGTAAAGGCTTAGAGCTGTCATTCAGGATTATCTCACTCagTACCGGACGACCTGACGCCAGAGGAGAAGCAGGAGCTGGAGAACATTAGGAGACGTAAACAGGAGCTGCTGGAGGACATACAGCGGCTCAAGGATGAGATAACAAAGGTGACCAATGAGATCGAATGTCTTGGCTCCACTCAAGAAAGAATAAACATGCAGCGGAGTAAGCAGATGGCTATGGGCCGCAAGAAATTTAACATGGATCCCAAAAAGGGGATTCAGTTCCTCATCGAGAACGAGTTGCTGAAAAACACTTGTGAAGATATTGCTCAATTCCTCTACAAGGGTGAAGGGCTCAACAAGACCGCCATCGGAGATTATCTGGGTGAAAGGGATGAGTTTAATATTCAGGTTCTTCATGCCTTTGTGGAGCTTCACGAGTTTACAGATCTCA
>TCONS_00009598
CCAATGTGAAGGACAAGCCGTCTGCAGAGAGATTCATATGCATGAACAGAGGCATCAATGATGGAGGAGACCTGCCTGAAGACCTGCTCAGAAACCTGTATGAGAGCATTAAGAATGAGCCCTTCAAGATCCCTGAAGATGACGGAAACGACCTCACACACACCTTCTTCAACCCAGACCGTGAGGGTTGGCTGCTCAAACTGGGTAAAAGATCTTTTCTCAATTCACAacatcaaaaaaacaacaaaaaaaaaaaacagatgcatACTCCTAAAtatgaatacactgtaaaatgctgggttccacacaatactTTCATGTTCTTCCAaaacaaatggattaagtttactgaattgtttttaattattttagtggatttaacataaaacaattaagttgttctcctcccccaaaaaatgtgttgattcatctcattttaagtaagtagtttaaacaagcagcaaaaatgtcttttttttttgagtgtgctaTAATTCTGTGAGCTGTGAATTAAAGGTCTTCTGTTGTGTAACATAATAGCCCAGAAGCATGCTTTAAATCCCAAAGCTAATGTAAAATAGCTGAAACAAGCTCCTTATTTATCCGCACGCTTCTCCTGTTTCAGCTCAGTCTGTATTTTGAATCAGGCTGACAAACACAAGTGTTTGTTGACAATCTTTTATTATGATATTTGTCAGATTTTCATGGttaatttgattgttttctttctttccatatttgtttttgttatttttggttTGATGTTGTCTTTCTTCAGGAGGTATGTACACTGGTTTCCTTTGGCT

Function

symbol description
cyth1b Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Is expressed in blastoderm; intermediate cell mass of mesoderm; neural crest; and polster. Orthologous to human CYTH1 (cytohesin 1).

GO:

id name namespace
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4311 Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Is expressed in blastoderm; intermediate cell mass of mesoderm; neural crest; and polster. Orthologous to human CYTH1 (cytohesin 1).

Ensembl:

ensembl_id ENSDARG00000021488

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009594 False 1734 mRNA 0.46 13 34051434 34192080
TCONS_00009595 False 602 mRNA 0.47 7 34051848 34174537
TCONS_00009596 False 2263 mRNA 0.43 13 34119439 34192955
TCONS_00009597 False 615 mRNA 0.45 6 34127573 34174367
TCONS_00009598 True 806 lncRNA 0.36 2 34179988 34181434

Neighbor

gene id symbol gene type direction distance location
XLOC_004859 sfxn2 coding upstream 62549 33975065 ~ 33988885 (+)
XLOC_004858 trim8b coding upstream 115912 33916939 ~ 33935522 (+)
XLOC_004857 mfsd13a coding upstream 136311 33894396 ~ 33915123 (+)
XLOC_004856 mrpl43 coding upstream 232338 33817327 ~ 33819096 (+)
XLOC_004854 NA coding upstream 444846 33595902 ~ 33606588 (+)
XLOC_004861 socs3b coding downstream 65184 34258139 ~ 34277465 (+)
XLOC_004862 tha1 coding downstream 185778 34378733 ~ 34397139 (+)
XLOC_004863 NA coding downstream 266714 34459669 ~ 34470463 (+)
XLOC_004864 si:dkey-21c1.8 coding downstream 539307 34732262 ~ 34746331 (+)
XLOC_004865 slc38a10 coding downstream 570840 34763795 ~ 34822821 (+)
XLOC_004855 NA non-coding upstream 445996 33602524 ~ 33605438 (+)
XLOC_004850 NA non-coding upstream 708149 33340215 ~ 33343285 (+)
XLOC_004848 BX936416.1 non-coding upstream 1099538 32951782 ~ 32951896 (+)
XLOC_004846 NA non-coding upstream 1525088 32431614 ~ 32526346 (+)
XLOC_004867 NA non-coding downstream 651487 34844442 ~ 34846842 (+)
XLOC_004869 CR854979.1 non-coding downstream 688822 34881777 ~ 34881895 (+)
XLOC_004874 NA non-coding downstream 865192 35058147 ~ 35059608 (+)
XLOC_004876 CU459210.1 non-coding downstream 913620 35106575 ~ 35107998 (+)

Expression


Co-expression Network