LOC120546379 (LOC103375580)


Basic Information

Item Value
gene id LOC120546379
gene name LOC103375580
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 8558469 ~ 8559470 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781306.1
ATGGAACCAGAAGTGACTGTCCCCGGGACTTACAATGTTAATGAAATACATCCCTGCTATGTATTAGCTAACACAACCTACATATTTACAAGCAACCCTTCCATAATATgcgttttattatattttttccttagCACATTGTCTGTTGTCACAATATGTGGAAACTTTCTTGTAATAATCTCCATCATTTACTTCAAACAGCTCCACATCCCTACTAACTACCTtattctctctctggctgtggCTGACCTGCTTGTGGGAGTTTTAGTTTTTCCTTTTAGCATGGTATTCACTGTAACCTCGTGTTGGTATCATGAgggtttattttgtaaagtacgAGGAAGCTTTGATGTTACACTGAGCACAGCTTCAATTTTGAACTTATGCTGTATTTCTATTGACAGATATTACGCAGTTTGTAAGCCTCTTGTTTATGaaagtaaaattaatgatcaTATTATTAGGATTATGATCCTGGTGAGCTGGGGAATTGCTTCTTTGATTGGGATTGGCATCATTATTGCAGGTTTTAATCAAGGAAAATGTGAAGAAAGTTGTTTAATTGATGCTCTAATATCAACCACTCTAGCGTGCATATTTTCCTTTTATATCCCAGTCATTATAATGCTTAGTATCTACCTGAAGATCTTCCTTGTTGCACAGGAACAGGCACGCAGCATCCAAAACACAACCTGTCAGAGCAAAAAGTCTGGAGGAACTGTGAGTAAGAATGAGAGAAAGGCCACTAAAACTCTGGCTATTGTTTTGGGAGTTTTTCTCTTGTGTTGGACTCCTTACTTTCTTTGTATCATATTTCAGCCTTTAACATATAACGTTACACCAATTGCTGTGATAGAAACACTTAACTGGCTTACACTTTTAAATTCAATGCTCAATCCATTCATTTATGCTTTCTTTTACAGCTGGTTCAGATCAGCTTTCAGAATGATCATTTCGGGAAAGATATTTCAGGGACATTTTGCCAACTCAAAACTTCTTTGA

Function

NR:

description
PREDICTED: trace amine-associated receptor 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781306.1 True 1002 mRNA 0.37 1 8558469 8559470

Neighbor

gene id symbol gene type direction distance location
LOC120546378 NA coding downstream 8289 8549179 ~ 8550180 (-)
LOC120546734 cd2ap coding downstream 217722 8251716 ~ 8340747 (-)
cnih3 cnih3,LOC108248696,LOC101155158,LOC107095392,LOC106527994,LOC107384796,LOC100708389,LOC103358879,LOC101472542 coding downstream 970404 7444861 ~ 7588065 (-)
meis2b LOC104938729,LOC103355645,LOC105017579 coding downstream 1757676 6762711 ~ 6800793 (-)
LOC120546794 NA coding downstream 2093667 6462940 ~ 6464802 (-)
LOC120546380 NA coding upstream 5673 8565143 ~ 8566141 (-)
LOC120546382 NA coding upstream 12933 8572403 ~ 8573320 (-)
LOC120546383 NA coding upstream 27872 8587342 ~ 8588259 (-)
LOC120546385 NA coding upstream 45214 8604684 ~ 8605599 (-)
LOC120546386 NA coding upstream 60289 8619759 ~ 8623728 (-)
G183042 NA non-coding downstream 79123 8478912 ~ 8479346 (-)
G183027 NA non-coding downstream 126795 8431362 ~ 8431674 (-)
G183013 NA non-coding downstream 312704 8245565 ~ 8245765 (-)
G183006 NA non-coding downstream 366995 8191178 ~ 8191474 (-)
G182983 NA non-coding downstream 510531 8047500 ~ 8047938 (-)
G183068 NA non-coding upstream 211818 8771288 ~ 8771585 (-)
G183136 NA non-coding upstream 439105 8998575 ~ 8998828 (-)
LOC120546288 NA non-coding upstream 538901 9098371 ~ 9099326 (-)
G183175 NA non-coding upstream 567251 9126721 ~ 9129230 (-)
G183177 NA non-coding upstream 574066 9133536 ~ 9134536 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other downstream 431805 8049458 ~ 8126664 (-)
G182977 NA other downstream 533425 8024715 ~ 8025044 (-)
G182952 NA other downstream 792083 7761565 ~ 7766386 (-)
G182764 NA other downstream 1857352 6700491 ~ 6701117 (-)
cgrrf1 NA other downstream 2289326 6232742 ~ 6269143 (-)
LOC120546397 NA other upstream 221858 8781328 ~ 8787218 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other upstream 461490 9020960 ~ 9024565 (-)
G183176 NA other upstream 570103 9129573 ~ 9133472 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other upstream 1540008 10099478 ~ 10101061 (-)
LOC120546776 NA other upstream 1895774 10455244 ~ 10610625 (-)

Expression


Co-expression Network