XLOC_000050 (farp1)


Basic Information

Item Value
gene id XLOC_000050
gene name farp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2301958 ~ 2444210 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000102
CCTACAGTCATGGCGTCCGGGAAGACGGTGGCTTTCCGCGCTATCCGCGAATAAGCGCCGAAAAACCCGTTTCACGCCACTTCAGCCGCCGCGCCGCGCGTTTTTTTCCAGCGGAATATCATTTAAAGACACCCTCGCGGACATATCAGCTCACAGCGAGTGCTCATTCAGCTTTTAAAGGGTTTAATCAATCGAGCCGCCGCCGCTGCCACGCGTCAGATCTTCTGAACATCAAACATTATTGCGGTAGCGCATCATCACTGTAGCGCTTTCTGCATAACTCCACAGATACTATGGTAAAACCACGTTTCGTCGATCACACTGAAAGTGCTGTAAGACTATCATTGAATAACGCCTGGAGTTTATTTAAATGGCTCTCCAAGGAATGCTCTGGCTCATGACCAACAACATAGTAGTTTTGTGTAATATAGTAAAACCACGTTTTTAGACTTGTATTTGGGAGTTATTACATAGCAATACACTATATAGTCACAGAAAAAGGTCACATTGGATTTCATAACCCTACAGAAGTGTATAATAATTCTGAATTGATCATACTA
>TCONS_00000103
ACAGTCATGGCGTCCGGGAAGACGGTGGCTTTCCGCGCTATCCGCGAATAAGCGCCGAAAAACCCGTTTCACGCCACTTCAGCCGCCGCGCCGCGCGTTTTTTTCCAGCGGAATATCATTTAAAGACACCCTCGCGGACATATCAGCTCACAGCGAGTGCTCATTCAGCTTTTAAAGGTGGGTTTGCTGCAGTATGGTGGAGCCAGAGGAGCGGCCCTCGGTGGCGGGGCAGAGACTCGGGGCACCTGAGAGTCTGGGCATCAGCACACTGGAGCCTGGGCAGCGGCCCCCCACTATGCCCCCCGGGAGACAGATCTCCATCCGTGTCCAGATGCTGGACGACACTCAGGAAGTCTTTGAGGTCTCGCAACGGGCCCCAGGGAAGGCGCTGTTTGACCTGGTTTGTTCTCATCTCAACCTCGTCGAGGGCGATTACTTCGGTTTGGAGTTTCAGGATCAGCGGAAAATGATTGTGAGCAACGCTTGTCTTTTATTTCAATATGTGAAACATGAGCTACCTCTATACACACAGTACTCAGGTGTCATGTTCTGTGACCCAATTAGGAATGTAAACACAGTGGCTCCGTCCCAAACCCTAGAGAGATGCCTATATCGATAacagccatatttatttatttatttttttacagtgttattttatttattttttttatttgctttttaatttaCCATGGCATTAGGTGTTTAGGCTTTCTTCTTCTTATGAATACTTTTTGGGTAAATAATGATTACCAGCTTTTGCAAAATGTTATGGTTTGATTCTCTTCTCAGGTGTGGCTGGATCTGCTGAAGCCAATTCTCAA
>TCONS_00000104
GTCCGGGAAGACGGTGGCTTTCCGCGCTATCCGCGAATAAGCGCCGAAAAACCCGTTTCACGCCACTTCAGCCGCCGCGCCGCGCGTTTTTTTCCAGCGGAATATCATTTAAAGACACCCTCGCGGACATATCACTCAGCAAACTCTCTGGGAAAGGCCTCCAGCAGAGGATGTTCTTCCTGttcAGTGATGTTGTGATGTACACGAGTCGAGGATTGACGGCGTCCAATCAGTTTAAAGTTCACGGTCAGCTTCCTCTCTACGGCATGACGATTCGGGAGAGCGAGGACGAGTGGGGTGTCCCGTATTCATTCACTCTGTTCGGACAGCGGCAGTCTGTCGTCGTCGCCGCCAGCTCAGCGTCTGAGATGGAGAAGTGGATAGAGGACATCAGGATGGCCATTGAACTGGCAGACAAGAGCAACGGACCGACCACTGAGATCCTGTCCAGCAGCTTCAGTGACAGCAAGTCTCCTGAAGACTGTAGTGCAGACCAGGAGTCAGAAGACGACCTCAGCTCCTCTCGATCCTCTCTGGAGCGCCAGACTCCTCACCGTGGTAATACCACGGTACACGTCTGCTGGCACCGCAGCACCAGCGTGTCCATGGTGGACTTTAGCGTAGCGCTGGAGaatcAG
>TCONS_00000105
CCGGGAAGACGGTGGCTTTCCGCGCTATCCGCGAATAAGCGCCGAAAAACCCGTTTCACGCCACTTCAGCCGCCGCGCCGCGCGTTTTTTTCCAGCGGAATATCATTTAAAGACACCCTCGCGGACATATCAGCTCACAGCGAGTGCTCATTCAGCTTTTAAAGGTGGGTTTGCTGCAGTATGGTGGAGCCAGAGGAGCGGCCCTCGGTGGCGGGGCAGAGACTCGGGGCACCTGAGAGTCTGGGCATCAGCACACTGGAGCCTGGGCAGCGGCCCCCCACTATGCCCCCCGGGAGACAGATCTCCATCCGTGTCCAGATGCTGGACGACACTCAGGAAGTCTTTGAGGTCTCGCAACGGGCCCCAGGGAAGGCGCTGTTTGACCTGGTTTGTTCTCATCTCAACCTCGTCGAGGGCGATTACTTCGGTTTGGAGTTTCAGGATCAGCGGAAAATGATTGTGTGGCTGGATCTGCTGAAGCCAATTCTCAAGCAGATTAGACgaCCCAAAAACATCATCCTGAGATTtgtggtgaagttttttcctcctGATCACACACAGCTCTTAGAGGAGCTCACCAGGTATCTGTTCGCTCTGCAGATCAAGCATGATCTGGCCTGTGGACGCCTGACCTGTAATGAGAGCAGCGCCGCCCTGCTGGTGGCTCATATAGTGCAGTCTGAGATTGGAGACTTTGATGAAGTGCAGTGCAAACAACATCTGCTCAACAACAAGTATATTCCAGAGCAGGACACACTGATGGACAAGATCATTGGATACCACCGCAAACATGTTGGACAAACACCAGCTGAATCTGACTACCAGCTTCTGGAGATCGCAAGGAGACTTGAGATGTATGGAGTGCGTCTTCATCCGGCAAAAGATCGAGAGGGTACAAGACTCAGCCTCGCCGTGGCTCATTCTGGTGTGCTGGTCTTTCAGggGCACACCAAGATAAATGCATTCAATTGGTCTAAAGTTCGGAAACTGAGCTTCAAGAGGAAACGCTTTCTTATAAAACTACGGCCTGATTTGAATAGTAACTGTCAGGATACTCTGGAGTTTATGATGGGAAGCAGGGACTGCTGTAAGGTGTTCTGGAAGATTTGTGTGGAGTACCATGCCTTTTTTCGCCTGTTTGAAGAACCCAAACCCAAGCCTAAACCAGTTCTGTTCACCAGAGGTTCCTCCTTCAGGTTCAGTGGCCGCACACAGAGGCAGGTGATTGATTATGTAAAGGACACTGAATTCAAAAAGGTTCCCTTTGAAAGAAAACACAGTAAAATCCAGTCCAACAGCAATCTTTCTCCATTCCCATCCAGGCAGAGTGCTGAGGGTCAAGGAGAGAGGAATGCCAGTGCTTCAGGACATCAGGCGGACTCGCCTCTTGGGCGCACTCAAGTGACTGTTGAAAACCCGGCTCTCCAGCGTTACACCGGGAGCCTAAACTCACAGACCAATGGATGTCGAAACGGGACCAGCGATGAGGCGGATGCTCGATTAAAGCCGTCCCCATCCAAACAACAGGCCGAGCATCTGAGCACAGGTCTAGCATCGCATTCTGCCAAGGGTAGCAGCTCCTCGATACCTTATATTGACTGCAGTGACATAGATAGTGAATACGATGTGGTTAACGGCCGAATCACCaggtctcactcacacacacatgacaaTGATGAGGTTGAGCCAACAGGTCGTAGAATACGGAATGGTTATGGAAATGGCCAACACAATGGGGCAAGCAAGTCCAGATTTAGGGAGTCTCCTTTGAATACCCGCCGGTTGGCTCAGAGTTCAGATACCTTCAACGGTAGTCAGATATCTAATGGGTCGTTTTGTGGTAACGGATCACCTCGTGCTATGCCTCTAAGCAGTACCTTGGTGGATGAATTGTTTCAAGGTATGGATAGACGTGGTTTGGTGTCACCTACTGCTCATTTAGTTGGTTCCCGAAGTGCAAACTGTAGTCCAGTGATGAGCAGTTTTCATAAAACAAGCTCCCTGAATAATCCAGAACAGATTGGGTATAGTAGTCGCAGACGATGGGATGATGGCAGCCATTACCTTAGCAATGGTCGATCTGGGAGCGAGGCTCAACATTATGGGAGCTACTCCCCAATCGTCAATCGATCTCCACACTTGCAGAAGCTCCAAAACGGCATGCGTAACCGTTCTGATACTGACCCAATGATTTTAAGCCAGTTGAGTTCAACCAATGAGCCTCGATCTTTGGTCTCCAGGGCTGAACGAATGGCTGCCATTGAGAGGCGTGTGGCAGCTAATGGGATTGGAGCATCCGGCCAATCTCGATCCAACAATGTCCAGCGCCTCTATGGAAGCAGGCTGAGTGCTAATGATCACAGTAGCCCAGTGCATATGATTGATGGTTCTACTAGTAGTGGAACTGAGTCTAGTGATACTGAGTCGGATGCAGGCAGCAACTCCTACTGTCAGCCCCTAGTTTATGGAAACCCCGGGGCAGCCAATTCTTCTCCTTTGCCTCAGAGCAAGTTCTCCTTTGGCGGTCTGCAACTGGAGGATGAGAGCCAAGGGGGAGATGATGGATTTAGGTATCCCATCATTGATGAGGATGGGGCACAGTTATTCAACTGCTAG
>TCONS_00000106
CCGGGAAGACGGTGGCTTTCCGCGCTATCCGCGAATAAGCGCCGAAAAACCCGTTTCACGCCACTTCAGCCGCCGCGCCGCGCGTTTTTTTCCAGCGGAATATCATTTAAAGACACCCTCGCGGACATATCAGCTCACAGCGAGTGCTCATTCAGCTTTTAAAGGTGGGTTTGCTGCAGTATGGTGGAGCCAGAGGAGCGGCCCTCGGTGGCGGGGCAGAGACTCGGGGCACCTGAGAGTCTGGGCATCAGCACACTGGAGCCTGGGCAGCGGCCCCCCACTATGCCCCCCGGGAGACAGATCTCCATCCGTGTCCAGATGCTGGACGACACTCAGGAAGTCTTTGAGGTCTCGCAACGGGCCCCAGGGAAGGCGCTGTTTGACCTGGTTTGTTCTCATCTCAACCTCGTCGAGGGCGATTACTTCGGTTTGGAGTTTCAGGATCAGCGGAAAATGATTGTGTGGCTGGATCTGCTGAAGCCAATTCTCAAGCAGATTAGACgaCCCAAAAACATCATCCTGAGATTtgtggtgaagttttttcctcctGATCACACACAGCTCTTAGAGGAGCTCACCAGGTATCTGTTCGCTCTGCAGATCAAGCATGATCTGGCCTGTGGACGCCTGACCTGTAATGAGAGCAGCGCCGCCCTGCTGGTGGCTCATATAGTGCAGTCTGAGATTGGAGACTTTGATGAAGTGCAGTGCAAACAACATCTGCTCAACAACAAGTATATTCCAGAGCAGGACACACTGATGGACAAGATCATTGGATACCACCGCAAACATGTTGGACAAACACCAGCTGAATCTGACTACCAGCTTCTGGAGATCGCAAGGAGACTTGAGATGTATGGAGTGCGTCTTCATCCGGCAAAAGATCGAGAGGGTACAAGACTCAGCCTCGCCGTGGCTCATTCTGGTGTGCTGGTCTTTCAGggGCACACCAAGATAAATGCATTCAATTGGTCTAAAGTTCGGAAACTGAGCTTCAAGAGGAAACGCTTTCTTATAAAACTACGGCCTGATTTGAATAGTAACTGTCAGGATACTCTGGAGTTTATGATGGGAAGCAGGGACTGCTGTAAGGTGTTCTGGAAGATTTGTGTGGAGTACCATGCCTTTTTTCGCCTGTTTGAAGAACCCAAACCCAAGCCTAAACCAGTTCTGTTCACCAGAGGTTCCTCCTTCAGGTTCAGTGGCCGCACACAGAGGCAGGTGATTGATTATGTAAAGGACACTGAATTCAAAAAGGTTCCCTTTGAAAGAAAACACAGTAAAATCCAGTCCAACAGCAATCTTTCTCCATTCCCATCCAGGCAGAGTGCTGAGGGTCAAGGAGAGAGGAATGCCAGTGCTTCAGGACATCAGGCGGACTCGCCTCTTGGGCGCACTCAAGTGACTGTTGAAAACCCGGCTCTCCAGCGTTACACCGGGAGCCTAAACTCACAGACCAATGGATGTCGAAACGGGACCAGCGATGAGGCGGATGCTCGATTAAAGCCGTCCCCATCCAAACAACAGGCCGAGCATCTGAGCACAGGTCCAGTGAGCCGCAGTCCTCAGCACAGCGAGTCTCCGTCTGCAGGACAGATGATGGTGAACGGCCAGAAGCAGAGTCTGAGCGTAGGCCAGAGTCCTGACGGACGGCAGCCCTCTCCTCTCACCAGCCCGCTACTATACGACGCCGGATTCATCCGCGCAGACGACGAGGACGAGAGGTTTCCGACTGATAAAGCGTACTTTATTGCCAAAGAGCTGCTGACCACAGAGAGGACGTATCTGAAGGACCTGGAGGTCATCACTGTGTCCTTTCAGAAGGCCGTGCTAAAGGATGAGGCCATGCCGGATTCATTGAGGAATCTCATATTCGCCAATTTTGAGCCGGTGTATAAGTTCCATGAGACGTTCCTGAAAGACGTGGAGCAGCGACTCGCACAGTGGGAAGGCAGATCAAACGCACACATTAAAGGAGATTACCAGCGCGTGGGTGATGTCATGCTCAAGAACATCCAGGGCCTGAAGCTGCTGTCAAGTCATCTGCAGAAGCACTCTGAGTCTCTGCTGGAGCTGGAGCAGTCGTGCCGCTCGTCTCGCCGGCTGGAGGTGTTGTGTCGAGACTTCGAGTTGCAGAAGGTGTGTTACCTGCCGCTCAACATCTTCTTCCTGCGGCCGCTGCACCGCCTGCTGCACTACAAGCAGATCCTTGAGCGCCTCTGCAAACACTACCCTCCGACACACGACGACTTCAGAGACTCACGAGctgcgCTGGCGGACGTCTCAGAGCTGGTTCTTCAGCTTCACACCACACTCATGAAGATGGAGAATTTCCAGAAGCTTCTGGAGCTCAAGAAAGACCTGGTGGGCATCGACAGCCTGGCGGCTCCTGGACGGGAGTTCATCAGGCTCGGCTGTCTCAGCAAACTCTCTGGGAAAGGCCTCCAGCAGAGGATGTTCTTCCTGttcAGTGATGTTGTGATGTACACGAGTCGAGGATTGACGGCGTCCAATCAGTTTAAAGTTCACGGTCAGCTTCCTCTCTACGGCATGACGATTCGGGAGAGCGAGGACGAGTGGGGTGTCCCGTATTCATTCACTCTGTTCGGACAGCGGCAGTCTGTCGTCGTCGCCGCCAGCTCAGCGTCTGAGATGGAGAAGTGGATAGAGGACATCAGGATGGCCATTGAACTGGCAGACAAGAGCAACGGACCGACCACTGAGATCCTGTCCAGCAGCTTCAGTGACAGCAAGTCTCCTGAAGACTGTAGTGCAGACCAGGAGTCAGAAGACGACCTCAGCTCCTCTCGATCCTCTCTGGAGCGCCAGACTCCTCACCGTGGTAATACCACGGTACACGTCTGCTGGCACCGCAGCACCAGCGTGTCCATGGTGGACTTTAGCGTAGCGCTGGAGaatcAGTTGTCTGGGAATCTGCTGAGGAAGTTCAAGAACAGCAACGGCTGGCAGAAGTTATGGGTGGTTTTCACAAACTTCAGTCTGTTCTTCTACAAAACACACCAGGATGAGTATCCTCTGGCCAGTCTCCCTCTGCTGGGTTACTCCATCACCATTCCCTCAGAGTCAGAAAACATCCACAAGGATTACGTCTTCAAGCTGCATTTCAAATCACACGTCTATTATTTCAGATCTGAGAGCGAGTACACATTTgagagatgGATGGAGGTGATCCGCAGCGCCACCTGCTCCTCCAGTGTCCTTCGCTCCTCCAGCCGGAAAGATCCGCTGGTGTACTGACCAAAAACACGCCTGTCCTCAATCAGGTCCTCTCTCTATCTGCTTCACCCCCCATTCCTGACTCTATTGACCGTCTCTGAAGACTCTGACGGGTTTAGATGTGAAgtacagcagaaacacacacacacacacacacacagacgtcaGTGTGACACGGTGCTTTCAGGAACACACTCAACATGAAGATGGTTATGAATGTGAAGTCGATATTATTTGTGACAGTGCTTTTGTAGGTGTTTTTGGATGCTGCGGTGAATGTGAGCGACGCGGTGGTTTCCTGTTTTATGAACTGTTTTTATACGCAGAAACACCTCAGCTTTATATTAAACATCAGATTCAGAATTCAGAAGTCGTGTTGATGCTTTTCAGTCTTTAGACAATGGAAAAAGATGTGCAGAGCTTATAATTGACAGGGGAAAGAGagattttgttgtatgt
>TCONS_00000107
ATGGTGGAGCCAGAGGAGCGGCCCTCGGTGGCGGGGCAGAGACTCGGGGCACCTGAGAGTCTGGGCATCAGCACACTGGAGCCTGGGCAGCGGCCCCCCACTATGCCCCCCGGGAGACAGATCTCCATCCGTGTCCAGATGCTGGACGACACTCAGGAAGTCTTTGAGGTCTCGCAACGGGCCCCAGGGAAGGCGCTGTTTGACCTGGTTTGTTCTCATCTCAACCTCGTCGAGGGCGATTACTTCGGTTTGGAGTTTCAGGATCAGCGGAAAATGATTGTGAGCAACGCTTGTCTTTTATTTCAATATGTGAAACATGAGCTACCTCTATACACACAGTACTCAGGTGTCATGTTCTGTGACCCAATTAGGAATGTAAACACAGTGGCTCCGTCCCAAACCCTAGAGAGATGCCTATATCGATAa
>TCONS_00000109
ATGTTCTTCCTGttcAGTGATGTTGTGATGTACACGAGTCGAGGATTGACGGCGTCCAATCAGTTTAAAGTTCACGGTCAGCTTCCTCTCTACGGCATGACGATTCGGGAGAGCGAGGACGAGTGGGGTGTCCCGTATTCATTCACTCTGTTCGGACAGCGGCAGTCTGTCGTCGTCGCCGCCAGCTCAGCGTCTGAGATGGAGAAGTGGATAGAGGACATCAGGATGGCCATTGAACTGGCAGACAAGAGCAACGGACCGACCACTGAGATCCTGTCCAGCAGCTTCAGTGACAGCAGTgaTGCAGACCAGGAGTCAGAAGACGACCTCAGCTCCTCTCGATCCTCTCTGGAGCGCCAGACTCCTCACCGTGGTAATACCACGGTACACGTCTGCTGGCACCGCAGCACCAGCGTGTCCATGGTGGACTTTAGCGTAGCGCTGGAGaatcAGTTGTCTGGGAATCTGCTGAGGAAGTTCAAGAACAGCAACGGCTGGCAGAAGTTATGGGTGGTTTTCACAAACTTCAGTCTGTTCTTCTACAAAACACACCAGGATGAGTATCCTCTGGCCAGTCTCCCTCTGCTGGGTTACTCCATCACCATTCCCTCAGAGTCAGAAAACATCCACAAGGATTACGTCTTCAAGCTGCATTTCAAATCACACGTCTATTATTTCAGATCTGAGAGCGAGTACACATTTgagagatgGATGGAGGTGATCCGCAGCGCCACCTGCTCCTCCAGTGTCCTTCGCTCCTCCAGCCGGAAAGATCCGCTGGTGTACTGA

Function

symbol description
farp1 Predicted to enable guanyl-nucleotide exchange factor activity; phosphatidylinositol phosphate binding activity; and phosphatidylserine binding activity. Acts upstream of or within glomerular filtration. Predicted to be located in cytoskeleton. Orthologous to human FARP1 (FERM, ARH/RhoGEF and pleckstrin domain protein 1).

GO:

id name namespace
GO:0003094 glomerular filtration biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0001786 phosphatidylserine binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:1901981 phosphatidylinositol phosphate binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-070424-163 Predicted to enable guanyl-nucleotide exchange factor activity; phosphatidylinositol phosphate binding activity; and phosphatidylserine binding activity. Acts upstream of or within glomerular filtration. Predicted to be located in cytoskeleton. Orthologous to human FARP1 (FERM, ARH/RhoGEF and pleckstrin domain protein 1).

Ensembl:

ensembl_id ENSDARG00000074381

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000102 False 560 processed_transcript 0.44 2 2301958 2302623
TCONS_00000103 False 824 mRNA 0.48 3 2301961 2394973
TCONS_00000104 False 638 processed_transcript 0.56 7 2301972 2441683
TCONS_00000105 False 2616 mRNA 0.50 13 2301974 2409126
TCONS_00000106 False 3696 mRNA 0.52 27 2301974 2444210
TCONS_00000107 False 426 mRNA 0.54 2 2321384 2394768
TCONS_00000109 True 789 mRNA 0.53 8 2431956 2443772

Neighbor

gene id symbol gene type direction distance location
XLOC_000048 kpnb3 coding upstream 2405 2260407 ~ 2299553 (+)
XLOC_000049 CR352215.1 coding upstream 26216 2275605 ~ 2275742 (+)
XLOC_000047 rap2ab coding upstream 61839 2222363 ~ 2240119 (+)
XLOC_000046 mbnl2 coding upstream 84097 2101541 ~ 2217861 (+)
XLOC_000045 slc5a3a coding upstream 274858 2025085 ~ 2027100 (+)
XLOC_000052 gpc6a coding downstream 268746 2712956 ~ 3036019 (+)
XLOC_000053 NA coding downstream 1274456 3718666 ~ 3720603 (+)
XLOC_000054 CABZ01063288.1 coding downstream 1315714 3759924 ~ 3760034 (+)
XLOC_000055 slitrk6 coding downstream 1657531 4101741 ~ 4154332 (+)
XLOC_000056 FO744838.1 coding downstream 2153850 4598060 ~ 4680477 (+)
XLOC_000044 NA non-coding upstream 278313 2023409 ~ 2023645 (+)
XLOC_000043 NA non-coding upstream 296326 2001716 ~ 2005632 (+)
XLOC_000034 NA non-coding upstream 682644 1617203 ~ 1619314 (+)
XLOC_000032 NA non-coding upstream 723707 1571847 ~ 1578251 (+)
XLOC_000057 NA non-coding downstream 2457250 4901460 ~ 5030155 (+)
XLOC_000059 NA non-coding downstream 2867269 5311479 ~ 5313595 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014655 LOC107559785 coding CM030128.1 CM030128.1 25660345 ~ 25698928 (+)