trnag-ucc_39


Basic Information

Item Value
gene id trnag-ucc_39
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 3202707 ~ 3202778 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1293
gCGATGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTgacccgggttcgattcccggcCATCGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1293 True 72 tRNA 0.58 1 3202707 3202778

Neighbor

gene id symbol gene type direction distance location
znf438 znf438,LOC104952784 coding upstream 267138 2878512 ~ 2935569 (+)
arhgap12b arhgap12 coding upstream 430021 2679636 ~ 2772686 (+)
LOC120552716 kif5b coding upstream 529969 2624686 ~ 2672738 (+)
gfod1 gfod1,LOC100711398,LOC102233768,LOC102788772 coding upstream 586806 2567665 ~ 2615901 (+)
slc12a7b LOC103361595 coding upstream 644081 2458659 ~ 2558626 (+)
jcada kiaa1462 coding downstream 79817 3282595 ~ 3306837 (+)
abcd3a abcd3 coding downstream 199190 3401968 ~ 3433621 (+)
steap2 steap2 coding downstream 367494 3570272 ~ 3638033 (+)
arhgef4 arhgef4 coding downstream 511533 3714311 ~ 3873302 (+)
LOC120552545 NA coding downstream 698173 3900951 ~ 3935126 (+)
trnas-aga_16 NA non-coding upstream 5206 3197420 ~ 3197501 (+)
trnas-aga_15 NA non-coding upstream 10734 3191892 ~ 3191973 (+)
trnag-ucc_38 NA non-coding upstream 11051 3191585 ~ 3191656 (+)
trnaa-ugc_22 NA non-coding upstream 16527 3186109 ~ 3186180 (+)
trnag-ucc_37 NA non-coding upstream 16851 3185785 ~ 3185856 (+)
trnas-aga_17 NA non-coding downstream 233 3203011 ~ 3203092 (+)
trnag-ucc_40 NA non-coding downstream 2201 3204979 ~ 3205050 (+)
trnaa-ugc_23 NA non-coding downstream 2519 3205297 ~ 3205368 (+)
trnas-aga_18 NA non-coding downstream 2777 3205555 ~ 3205636 (+)
trnas-aga_19 NA non-coding downstream 5819 3208597 ~ 3208678 (+)
G217606 svil other upstream 181065 3006283 ~ 3021642 (+)
G217377 NA other upstream 1527307 1669162 ~ 1675400 (+)
zcchc2 zcchc2 other upstream 1697492 1462750 ~ 1505215 (+)
LOC120552392 mtpap other downstream 17837 3220615 ~ 3233822 (+)
G217723 cnn3 other downstream 292672 3495450 ~ 3543785 (+)
chchd7 chchd7,LOC102799933 other downstream 467642 3670420 ~ 3704375 (+)
ppp1r17 NA other downstream 1053270 4256048 ~ 4261598 (+)
trdmt1 LOC104946219,LOC101070638 other downstream 1308935 4511713 ~ 4522706 (+)

Expression


Co-expression Network