LOC120554127


Basic Information

Item Value
gene id LOC120554127
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11037355 ~ 11046959 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU317805
CGTCACTTCCTGTGGACATAACACCTGAGTTTCCTGTCGGCAGCTGGTCCTTAAAAACCAATGTAGTCATCTACTGCTCTTCTTTGTTGCAGTGCAGTCATTTAGGATTAGAGTAGGACTGTGTTACTATAGCACCATACACCTTTTAAGGAGCAATACCCAAGCTAACAACGGGTGAAGCTGCTAAGGATGTGGAAATGGATTTGTATGACATGCCACGAGGGTCAAAGCTTAACTAAAGGTTTATAAAATCCCATGGAATATGAGAGGTCGCGCAGTTTGTCCACCGTTCTGCCGGGGATGATCGCGTTGAATGCGGAACTAAAGTCCGCAAACGGCACCCCTCACATACGAGCCGGGGCTCTCCAGgTGAGAGCCTCAGCTTCAGAGTAATACGAGGCGCCCGGCAACAGCAGCTGGGAGCTCCGTGGAAACCATCGTGTTCCTGTGTGAAGCTATTGAGCGATCTGCTGAAATGGAGCCCAGTACCGCTGATGGCAACCAGGACCTGGTCGTGTTCTGGGAGGAGATCCCCCCAGTGCAAAGacTCAAATGTCAGGTCCTGCAGGATGTGAAGCCCGTCCTCAGACTGACGGCCAACAGCTACCACACGCCAGCGGCCAGCAGCGATCACCAAAGGATTCACGCAACGCTCCTGCAGGTGATGGCCAGCAGCAGTCGCCTGGAGCAGAAGTTGGACCGCAGCCTTTGGACCCTGAAGGTTTTTATGGTCCTGGCCATGGTcttgacagctttgtggggcttGACTCTGTACATCCACTATTCAGCTGGCTATTTTAACCGCTGGATCACGGCTAAAAACTGAGGCAGcaaagtctgtctgtgtgtgtttgacctgCAACATAAATTCTGGACTCCTGGAAGTTTACATCTTTTTTACATTGTGATGTTTATGTGGGTCTACTGTATATGGATGCAGCTATACTCCAGAGGCATAGATAATGCACGCACACTTGTGGAAACTAATTTCC
>XR_005638320.1
CCTGAGTTTCCTGTCGGCAGCTGGTCCTTAAAAACCAATGTAGTCATCTACTGCTCTTCTTTGTTGCAGTGCAGTCATTTAGGATTAGAGTAGGACTGTGTTACTATAGCACCATACACCTTTTAAGGAGCAATACCCAAGCTAACAACGGTAGGAGGTCTTCTCCTCGGCCGCCTTACCATGATTGAAGACGCATGCAGGGTGAAGCTGCTAAGGATGTGGAAATGGATTTGTATGACATGCCACGAGGGTCAAAGCTTAACTAAAGGTTTATAAAATCCCATGGAATATGAGAGGTCGCGCAGTTTGTCCACCGTTCTGCCGGGGATGATCGCGTTGAATGCGGAACTAAAGTCCGCAAACGGCACCCCTCACATACGAGCCGGGGCTCTCCAGgTGAGAGCCTCAGCTTCAGAGTAATACGAGGCGCCCGGCAACAGCAGCTGGGAGCTCCGTGGAAACCATCGTGTTCCTGTGTGAAGCTATTGAGCGATCTGCTGAAATGGAGCCCAGTACCGCTGATGGCAACCAGGACCTGGTCGTGTTCTGGGAGGAGATCCCCCCAGTGCAAAGacTCAAATGTCAGGTCCTGCAGGATGTGAAGCCCGTCCTCAGACTGACGGCCAACAGCTACCACACGCCAGCGGCCAGCAGCGATCACCAAAGGATTCACGCAACGCTCCTGCAGGTGATGGCCAGCAGCAGTCGCCTGGAGCAGAAGTTGGACCGCAGCCTTTGGACCCTGAAGGTTTTTATGGTCCTGGCCATGGTcttgacagctttgtggggcttGACTCTGTACATCCACTATTCAGCTGGCTATTTTAACCGCTGGATCACGGCTAAAAACTGAGGCAGcaaagtctgtctgtgtgtgtttgacctgCAACATAAATTCTGGACTCCTGGAAGTTTACATCTTTTTTACATTGTGATGTTTATGTGGGTCTACTGTATATGGATGCAGCTATACTCCAGAGGCATAGATAATGCACGCACACTTGTGGAAACTAATTTCCCtcctggggacaataaagtcttTCTCATCTATCCATCTCGTTCATAAATTCCATAACCCGGGAAAATAACTTCTGGACATTGCATCGCTGTCTGGTCTCCTATCACGTGTAATAGTTAGGATTTTGATCAGTGTCAAGTCTTCCTTCAAACCAATTTGGATTCATTGGACGTCCTTAAACGAGTTCTTGAAAGAAGTCGAAGTGCTTAAATTTGACatgcagttgttgttttttggacCCCTGCTTCAAGGTGGGGGCGAAGAATCAAAGAGCCGGTAAGTTTGGCTTCCCGTACATGCTCtataatactatactataatactACTATTGTTGGGTTTATTTCTTTAAGAATGATGCTTTTGCAGAAATGAATGCTTTTCATTTAGAACCATTGTTAGAGATCATCACACAACTATTACCGGTAGTAATGTTTATGATGGGTATAAACTTGTGGTAATATATGGTATTTCCATAGCTTAATAATGTGTGTAGGTGTGATCGTTCTACATTTTAGATGAGATATAGGGAAGAGTAAGAAcggatatactgtatttattgcTAAATATGGATGTGATCTGAAGTGATTTGGAGTTTTTGTCTTCATAttttaggagaagaagaagccagCATTTGAGCTATGACAGCGCTCATTTCTACCACTGTGATTGGTAGTGCTGCTGCATTTATCATTGCAACTGGATTTGTCCTTGGGCTTATCCTGAGAAAGAATTATTGCAGATGAACTGTAGTTGCTTCTCGCTCTATgtgaaacccccc
>XR_005638321.1
CCTGAGTTTCCTGTCGGCAGCTGGTCCTTAAAAACCAATGTAGTCATCTACTGCTCTTCTTTGTTGCAGTGCAGTCATTTAGGATTAGAGTAGGACTGTGTTACTATAGCACCATACACCTTTTAAGGAGCAATACCCAAGCTAACAACGGTAGGAGGTCTTCTCCTCGGCCGCCTTACCATGATTGAAGACGCATGCAGGGTGAAGCTGCTAAGGATGTGGAAATGGATTTGTATGACATGCCACGAGGGTCAAAGAACATGCATTTTCTGAAGTATATCATGTATTACTTCCTTGAAGACGGCCACAGATTGCTGTGCAAGTAGTAGTACTTAACTAAAGGTTTATAAAATCCCATGGAATATGAGAGGTCGCGCAGTTTGTCCACCGTTCTGCCGGGGATGATCGCGTTGAATGCGGAACTAAAGTCCGCAAACGGCACCCCTCACATACGAGCCGGGGCTCTCCAGgTGAGAGCCTCAGCTTCAGAGTAATACGAGGCGCCCGGCAACAGCAGCTGGGAGCTCCGTGGAAACCATCGTGTTCCTGTGTGAAGCTATTGAGCGATCTGCTGAAATGGAGCCCAGTACCGCTGATGGCAACCAGGACCTGGTCGTGTTCTGGGAGGAGATCCCCCCAGTGCAAAGacTCAAATGTCAGGTCCTGCAGGATGTGAAGCCCGTCCTCAGACTGACGGCCAACAGCTACCACACGCCAGCGGCCAGCAGCGATCACCAAAGGATTCACGCAACGCTCCTGCAGGTGATGGCCAGCAGCAGTCGCCTGGAGCAGAAGTTGGACCGCAGCCTTTGGACCCTGAAGGTTTTTATGGTCCTGGCCATGGTcttgacagctttgtggggcttGACTCTGTACATCCACTATTCAGCTGGCTATTTTAACCGCTGGATCACGGCTAAAAACTGAGGCAGcaaagtctgtctgtgtgtgtttgacctgCAACATAAATTCTGGACTCCTGGAAGTTTACATCTTTTTTACATTGTGATGTTTATGTGGGTCTACTGTATATGGATGCAGCTATACTCCAGAGGCATAGATAATGCACGCACACTTGTGGAAACTAATTTCCCtcctggggacaataaagtcttTCTCATCTATCCATCTCGTTCATAAATTCCATAACCCGGGAAAATAACTTCTGGACATTGCATCGCTGTCTGGTCTCCTATCACGTGTAATAGTTAGGATTTTGATCAGTGTCAAGTCTTCCTTCAAACCAATTTGGATTCATTGGACGTCCTTAAACGAGTTCTTGAAAGAAGTCGAAGTGCTTAAATTTGACatgcagttgttgttttttggacCCCTGCTTCAAGGTGGGGGCGAAGAATCAAAGAGCCGGTAAGTTTGGCTTCCCGTACATGCTCtataatactatactataatactACTATTGTTGGGTTTATTTCTTTAAGAATGATGCTTTTGCAGAAATGAATGCTTTTCATTTAGAACCATTGTTAGAGATCATCACACAACTATTACCGGTAGTAATGTTTATGATGGGTATAAACTTGTGGTAATATATGGTATTTCCATAGCTTAATAATGTGTGTAGGTGTGATCGTTCTACATTTTAGATGAGATATAGGGAAGAGTAAGAAcggatatactgtatttattgcTAAATATGGATGTGATCTGAAGTGATTTGGAGTTTTTGTCTTCATAttttaggagaagaagaagccagCATTTGAGCTATGACAGCGCTCATTTCTACCACTGTGATTGGTAGTGCTGCTGCATTTATCATTGCAACTGGATTTGTCCTTGGGCTTATCCTGAGAAAGAATTATTGCAGTACATCATACTGTACCCTGCCAGCAGCAGTTGCACCAGTAATGGGTAGATGGAGAATGTGGTTAGTTCTGCTCCTGCAGCTAACTTTGTATGTCTTCGACACCAAAGAGACTGGGAAGCAACTGCAGAAAACCATCGGTAGAGAACCAGATGTTACTCCGATATGTTCCAATACAACACTGAGTCCCATCGTCTTTATAGTGTGTAAGATCAGAACAGAGACGAGCGGCGGAGGAGAGTGCAGTCTGCTGTATCGAGATGGAGAGGACTTTAAGAACGAATGTGACTCCAGATTCACTCTTATGATGGTGAATCAGACTGTATTTCTCCACCTGTCTGGTTTGACACCAGTGGATAGTGGGAACCACACCTGTCAGTGTTCACATCCTGGTGGAACAGATATTCTCCATCTTAACATCACTGTGGAAGCGGATGAAGATGCCGGCAGTTCTACAGACATGCCTTTCCTCAATGCTGTAATTATTGGTGTAATTATATTCATCACGATAACTGGAGTTATCCTCGGCTGTATCCACGGAAGAAATCACCACAGAAGACGATCAGAAGCGCTGACAAGTCATGCAAACACGG

Function

GO:

id name namespace
GO:0044428 obsolete nuclear part cellular_component
GO:0005681 spliceosomal complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU317805 False 992 TUCP 0.50 8 11040007 11046959
XR_005638320.1 False 1796 lncRNA 0.45 9 11039109 11046936
XR_005638321.1 True 2421 lncRNA 0.45 13 11037355 11046936

Neighbor

gene id symbol gene type direction distance location
LOC120554122 NA coding downstream 7994 11020833 ~ 11029361 (-)
LOC120554124 NA coding downstream 18693 11013995 ~ 11018662 (-)
LOC120554123 NA coding downstream 23717 11011232 ~ 11013638 (-)
LOC120554120 NA coding downstream 41995 10990549 ~ 10995360 (-)
LOC120554119 NA coding downstream 48306 10967135 ~ 10989049 (-)
LOC120554129 LOC103361269,LOC104942788,LOC103151927 coding upstream 48557 11095516 ~ 11101153 (-)
LOC120554130 NA coding upstream 57408 11104367 ~ 11105832 (-)
LOC120554132 prps2 coding upstream 93578 11140537 ~ 11150651 (-)
LOC120554133 NA coding upstream 107967 11154926 ~ 11220986 (-)
LOC120554135 NA coding upstream 183262 11230221 ~ 11232384 (-)
LOC120554121 NA non-coding downstream 79065 10957910 ~ 10958290 (-)
G233939 NA non-coding downstream 113539 10915974 ~ 10923816 (-)
LOC120554109 NA non-coding downstream 189000 10837792 ~ 10848355 (-)
G233918 NA non-coding downstream 206225 10829346 ~ 10831130 (-)
LOC120554110 NA non-coding downstream 207095 10824907 ~ 10830260 (-)
G234026 NA non-coding upstream 13852 11060811 ~ 11083168 (-)
G234032 NA non-coding upstream 104883 11151842 ~ 11152551 (-)
G234051 NA non-coding upstream 237833 11284792 ~ 11285090 (-)
G234063 NA non-coding upstream 258652 11305611 ~ 11306703 (-)
G234078 NA non-coding upstream 285322 11332281 ~ 11332560 (-)
G233954 NA other downstream 68245 10948468 ~ 10969110 (-)
si:ch211-132g1.7 ptgfrn,LOC104953994 other downstream 512270 10464322 ~ 10525085 (-)
LOC120554082 NA other downstream 649422 10383688 ~ 10387933 (-)
G233703 atg13 other downstream 764496 10271069 ~ 10272859 (-)
arhgef7b arhgef7,LOC102205121,LOC101465658,LOC100696931 other downstream 860545 10152861 ~ 10176810 (-)
LOC120554131 NA other upstream 89668 11136627 ~ 11139245 (-)
spega LOC103358966 other upstream 341593 11388552 ~ 11441926 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other upstream 411978 11458937 ~ 11489477 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other upstream 477423 11524382 ~ 11538321 (-)
G234253 LOC103139183,LOC106940425,LOC106914874 other upstream 1231560 12278519 ~ 12293143 (-)

Expression


Co-expression Network