rgn (LOC103371141)


Basic Information

Item Value
gene id rgn
gene name LOC103371141
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20843492 ~ 20853383 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU321079
CGGAGCCTTCAGCTCGAGCAGAGTACACCTGTTGGACCCGTTTAAAACTTCTACAACTTTAAATAAGAGTGATGTCATCGGTGAAGGTGGAGTGTGTGGTGAAAGCGAGTGCTCTGATTGGTGAAGGGCCGGTGTGGGAGGAGTCAGACCAGACGCTGCTGTTTGTCGACATCGCCGGACACAAAATCAACCGCTGGAGTCCAACGACCAATCAGATGCAGTCTGTGGAGACAGagGACTCTGTGGGCTTTGTGGTTCCCCGTGTCTCTGGTGGTTATGTTGCCGGTGTGGGTCGCAGCATCGTGGCTGTTGATTGGTCAACTGAGATGATGACATCACTGGTGGAGGTGGACCAGGACAAACCGACCAATCGGCTGAACGACGGGAAAGTGGACCCGGCAGGACGCCTGCTGGCaggtACGATGGGGAAGGAGGAGAGACCGGCCGAAGTTCAGAAAGGACAAGGATCTCTGTTCTCTGTGGCCTCTGACCTCACTGTTACCAGACACCTGAGAcaggtggACATCTCTAACGGGATGGACTGGTCTTTGGAccagaaaacatttttctacatCGACAGTTTGTCTCTGACCGTCGACGCCTTCGACTACGACCTAAACACAGGAAACATCAGTAAGACTCACCTGTACCCTCTCACCTATACCCTCTCACCTGTACCCTCTCACCTGTACCCTCTCACCTATACCCTCTCACCT
>TU321082
CGGAGCCTTCAGCTCGAGCAGAGTACACCTGTTGGACCCGTTTAAAACTTCTACAACTTTAAATAAGAGTGATGTCATCGGTGAAGGTGGAGTGTGTGGTGAAAGCGAGTGCTCTGATTGGTGAAGGGCCGGTGTGGGAGGAGTCAGACCAGACGCTGCTGTTTGTCGACATCGCCGGACACAAAATCAACCGCTGGAGTCCAACGACCAATCAGATGCAGTCTGTGGAGACAGagGACTCTGTGGGCTTTGTGGTTCCCCGTGTCTCTGGTGGTTATGTTGCCGGTGTGGGTCGCAGCATCGTGGCTGTTGATTGGTCAACTGAGATGATGACATCACTGGTGGAGGTGGACCAGGACAAACCGACCAATCGGCTGAACGACGGGAAAGTGGACCCGGCAGGACGCCTGCTGGCaggtACGATGGGGAAGGAGGAGAGACCGGCCGAAGTTCAGAAAGGACAAGGATCTCTGTTCTCTGTGGCCTCTGACCTCACTGTTACCAGACACCTGAGAcaggtggACATCTCTAACGGGATGGACTGGTCTTTGGAccagaaaacatttttctacatCGACAGTTTGTCTCTGACCGTCGACGCCTTCGACTACGACCTAAACACAGGAAACATCAGTAAGACTCACCTGTACCCTCTCACCTATACCCTCTCACCTGTACCCTCTCACCTGTACCCTCTCACCTATACCCTTTCACATTTACCCTCTCACCTGTTCCCCTCTCACCTGTACCCTCTCACCTGTACCCTCTCACCTAT
>TU321084
CGGAGCCTTCAGCTCGAGCAGAGTACACCTGTTGGACCCGTTTAAAACTTCTACAACTTTAAATAAGAGTGATGTCATCGGTGAAGGTGGAGTGTGTGGTGAAAGCGAGTGCTCTGATTGGTGAAGGGCCGGTGTGGGAGGAGTCAGACCAGACGCTGCTGTTTGTCGACATCGCCGGACACAAAATCAACCGCTGGAGTCCAACGACCAATCAGATGCAGTCTGTGGAGACAGagGACTCTGTGGGCTTTGTGGTTCCCCGTGTCTCTGGTGGTTATGTTGCCGGTGTGGGTCGCAGCATCGTGGCTGTTGATTGGTCAACTGAGATGATGACATCACTGGTGGAGGTGGACCAGGACAAACCGACCAATCGGCTGAACGACGGGAAAGTGGACCCGGCAGGACGCCTGCTGGCaggtACGATGGGGAAGGAGGAGAGACCGGCCGAAGTTCAGAAAGGACAAGGATCTCTGTTCTCTGTGGCCTCTGACCTCACTGTTACCAGACACCTGAGAcaggtggACATCTCTAACGGGATGGACTGGTCTTTGGAccagaaaacatttttctacatCGACAGTTTGTCTCTGACCGTCGACGCCTTCGACTACGACCTAAACACAGGAAACATCAGTAAGACTCACCTGTACCCTCTCACCTATACCCTCTCACCTGTACCCTCTCACCTGTACCCTCTCACCTATACCCTCTCACCTGTACCCTCTCACCTGTACCCTCTCACCTAT
>TU321086
CGGAGCCTTCAGCTCGAGCAGAGTACACCTGTTGGACCCGTTTAAAACTTCTACAACTTTAAATAAGAGTGATGTCATCGGTGAAGGTGGAGTGTGTGGTGAAAGCGAGTGCTCTGATTGGTGAAGGGCCGGTGTGGGAGGAGTCAGACCAGACGCTGCTGTTTGTCGACATCGCCGGACACAAAATCAACCGCTGGAGTCCAACGACCAATCAGATGCAGTCTGTGGAGACAGagGACTCTGTGGGCTTTGTGGTTCCCCGTGTCTCTGGTGGTTATGTTGCCGGTGTGGGTCGCAGCATCGTGGCTGTTGATTGGTCAACTGAGATGATGACATCACTGGTGGAGGTGGACCAGGACAAACCGACCAATCGGCTGAACGACGGGAAAGTGGACCCGGCAGGACGCCTGCTGGCaggtACGATGGGGAAGGAGGAGAGACCGGCCGAAGTTCAGAAAGGACAAGGATCTCTGTTCTCTGTGGCCTCTGACCTCACTGTTACCAGACACCTGAGAcaggtggACATCTCTAACGGGATGGACTGGTCTTTGGAccagaaaacatttttctacatCGACAGTTTGTCTCTGACCGTCGACGCCTTCGACTACGACCTAAACACAGGAAACATCAGTAAGACTCACCTGTACCCTCTCACCTATACCCTCTCACCTGTACCCTCTCACCTGTACCCTCTCACCTATACCCCCTCACCT
>XM_039792558.1
tttttcactaattGGTACGGCAGATACCGTCTACAGTGGAGCTGTTCGACTAATgttactggattaaaacacatttcgAGTGATGTCATCGGTGAAGGTGGAGTGTGTGGTGAAAGCGAGTGCTCTGATTGGTGAAGGGCCGGTGTGGGAGGAGTCAGACCAGACGCTGCTGTTTGTCGACATCGCCGGACACAAAATCAACCGCTGGAGTCCAACGACCAATCAGATGCAGTCTGTGGAGACAGagGACTCTGTGGGCTTTGTGGTTCCCCGTGTCTCTGGTGGTTATGTTGCCGGTGTGGGTCGCAGCATCGTGGCTGTTGATTGGTCAACTGAGATGATGACATCACTGGTGGAGGTGGACCAGGACAAACCGACCAATCGGCTGAACGACGGGAAAGTGGACCCGGCAGGACGCCTGCTGGCaggtACGATGGGGAAGGAGGAGAGACCGGCCGAAGTTCAGAAAGGACAAGGATCTCTGTTCTCTGTGGCCTCTGACCTCACTGTTACCAGACACCTGAGAcaggtggACATCTCTAACGGGATGGACTGGTCTTTGGAccagaaaacatttttctacatCGACAGTTTGTCTCTGACCGTCGACGCCTTCGACTACGACCTAAACACAGGAAACATCAGTAAGACTCACCTGTACCCTCTCACCTATACCCTCTCACCTGTACCCTCTCACCTGTACCCTCTCACCTATACCCTCTCACCTATAACCCTCTCACCCTACACTCTCACCGAACTCTCTCACTCATACCTCTCAAACCTGTAA

Function

NR:

description
regucalcin

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0005509 calcium ion binding molecular_function
GO:0030234 enzyme regulator activity molecular_function

KEGG:

id description
K01053 gnl, RGN; gluconolactonase

RNA

RNA id representative length rna type GC content exon number start site end site
TU321079 False 716 TUCP 0.53 5 20845361 20853383
TU321082 False 775 TUCP 0.53 6 20843492 20853383
TU321084 False 746 TUCP 0.53 6 20843492 20853383
TU321086 False 716 TUCP 0.53 6 20844051 20853383
XM_039792558.1 True 787 mRNA 0.52 5 20845301 20850464

Neighbor

gene id symbol gene type direction distance location
LOC120554361 NA coding downstream 41222 20794346 ~ 20802270 (-)
LOC120554635 LOC104961873,LOC103363323 coding downstream 387429 20442981 ~ 20456063 (-)
dhrsx dhrsx,LOC104961879,LOC108244136,LOC106908010,LOC106908011 coding downstream 463000 20375593 ~ 20380492 (-)
pnpla4 pnpla4 coding downstream 1087523 19749071 ~ 19755969 (-)
aox6 NA coding downstream 1189180 19622102 ~ 19654312 (-)
vps16 vps16 coding upstream 182 20853565 ~ 20867800 (-)
dytn NA coding upstream 112555 20965938 ~ 21075255 (-)
ftcd ftcd coding upstream 137507 20990890 ~ 21003269 (-)
LOC120554641 LOC103473932 coding upstream 273511 21126894 ~ 21149363 (-)
LOC120554016 NA coding upstream 798583 21651966 ~ 21691088 (-)
G236560 NA non-coding downstream 1747 20839612 ~ 20841745 (-)
LOC120554363 NA non-coding downstream 4725 20824834 ~ 20838767 (-)
G236644 NA non-coding downstream 12756 20830357 ~ 20830736 (-)
LOC120554364 LOC100693318,LOC101465085,LOC102292591 non-coding downstream 18677 20821734 ~ 20824815 (-)
G236569 NA non-coding downstream 41844 20801362 ~ 20801648 (-)
G236610 NA non-coding upstream 6271 20859654 ~ 20918008 (-)
G236621 NA non-coding upstream 17617 20871000 ~ 20871638 (-)
G236607 NA non-coding upstream 17744 20871127 ~ 20874204 (-)
G236559 NA non-coding upstream 27536 20880919 ~ 20882181 (-)
G236649 NA non-coding upstream 40857 20894240 ~ 20896132 (-)
G236349 NA other downstream 82500 20760708 ~ 20760992 (-)
G236340 NA other downstream 115065 20726403 ~ 20728427 (-)
G236277 adarb1,adarb1b,LOC105907970,LOC107754003 other downstream 475059 20367341 ~ 20368433 (-)
G236111 sts,LOC108241831 other downstream 1110955 19731319 ~ 19732537 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other downstream 1314250 19523504 ~ 19529242 (-)
G236646 NA other upstream 9297 20862680 ~ 20863311 (-)
LOC120554644 NA other upstream 39531 20892914 ~ 20920498 (-)
arl11 NA other upstream 87605 20940988 ~ 20951865 (-)
LOC120554013 LOC103366577 other upstream 347613 21200996 ~ 21242177 (-)
LOC120554014 NA other upstream 446898 21300281 ~ 21557021 (-)

Expression


Co-expression Network