pnpla4 (pnpla4)


Basic Information

Item Value
gene id pnpla4
gene name pnpla4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 19749071 ~ 19755969 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793142.1
GTTTAGTGTGTCCGGTTCGGCGGCCGTGTGGAAACACATGCTAACCTTCCGTGTTTACGTTTACATGGAGCAGTAACGAGTTGTAGTTTTGCCGTTACCGGTAAATAAATCCAAGACAAAATGAGGTAACGGGAAAGGTTTCGGCTGTAAAACACGGtatttcttcttcctctccttcttgTCTTCAGCCTGACCGTGTGGAGGATGCCGGTCCTGAACTTGTCCTTCGCTGCGTGTGGTTTTTTGGGGATCTACCAGCTGGGAGCAGTGGGAGCTTTCCTCCGCCACGGAGACCGGCTGCTGGGATCCCTCGGGGCCTGCGCCGGGGCATCAGCCGGCGCCCTGGTGGCTGCCGTGATGATCACAGCGCCCGACAAGTTGGAGAACTGTAAAGAGTTCACGTACCGGTTCGCTGACAGCGTGAGACGGCAGTCGTTTGGAGCCGCCACGCCGGGATACGACTTCATGCTCACACTGCGGGAGGGGATAGAAGAGATTCTGCCCAGCGAGGCTCACCGTCTGGCCGCCGGCCGCCTCCACGTCTCCGTCACTAACTCCACAAGTGGCCGCAACCACATCCTGTCCCGGTTCTCCTCCAGGGAGGAACTCATACAGGCTCTGCTGGCCAGCAGCTTTGTGCCGTTCTACGCAGGACTCAAACCGGTGGAATTACGAGGACAGaaatggatggatggagggttCTCCGACAGCCTGCCTATTCTGCCGGTGGGACGAACCATCACTGTGTCTCCGTTTGCCGGACTGCAGGATGTGTGTCCCGTCCACAGGGGGCGCTCCAACACTCAACTCACACTGGCCAACATGAACATAATGCTCTCTGTGGAAAACATCAAGCGTCTGAACCAGGCTCTGTTCCCTCCGTCCAGCGGCGGCATGCAGGCGCTGTGTGAAGAAGGTTTCAGAGACGCGGTGGGCTTCCTCAAGAGAGAGGACTGGATGAGCTCATGACGCTCATTTTTTATTCTATGAACAAGCATGAAGCCAAGTACCTTTCACGGAAATGTGACAATggattttatgtatttattccctCTTAGGGTTCAACAGTAAGGGTGAAATATAACAACCAAAGTTTGAATCATTTCTTCCGATCATCATCGTATTATAAATGACTCCATTGCTCTCGCCCATGTTGGAGGAGGGTTTGTTGAACgatttgatttgaatgtgcCTCTGGCCAATCAAGAATTTAGATGGACAAGGGCACATTTAGTTTTAAGCTTTCGCCAAAGTTGCAGtgatggaaagtaactaagtacatttactccagtactgtacttcagtccaaatgttgaggtacttgtactttacttgagtcttttcttttcatgccactttctacttctactcc
>XM_039793143.1
GTTTAGTGTGTCCGGTTCGGCGGCCGTGTGGAAACACATGCTAACCTTCCGTGTTTACGTTTACATGGAGCAGTAACGAGTTGTAGTTTTGCCGTTACCGGTAAATAAATCCAAGACAAAATGAGGTAACGGGAAAGGTTTCGGCTGTAAAACACGGTGTGGAGGATGCCGGTCCTGAACTTGTCCTTCGCTGCGTGTGGTTTTTTGGGGATCTACCAGCTGGGAGCAGTGGGAGCTTTCCTCCGCCACGGAGACCGGCTGCTGGGATCCCTCGGGGCCTGCGCCGGGGCATCAGCCGGCGCCCTGGTGGCTGCCGTGATGATCACAGCGCCCGACAAGTTGGAGAACTGTAAAGAGTTCACGTACCGGTTCGCTGACAGCGTGAGACGGCAGTCGTTTGGAGCCGCCACGCCGGGATACGACTTCATGCTCACACTGCGGGAGGGGATAGAAGAGATTCTGCCCAGCGAGGCTCACCGTCTGGCCGCCGGCCGCCTCCACGTCTCCGTCACTAACTCCACAAGTGGCCGCAACCACATCCTGTCCCGGTTCTCCTCCAGGGAGGAACTCATACAGGCTCTGCTGGCCAGCAGCTTTGTGCCGTTCTACGCAGGACTCAAACCGGTGGAATTACGAGGACAGaaatggatggatggagggttCTCCGACAGCCTGCCTATTCTGCCGGTGGGACGAACCATCACTGTGTCTCCGTTTGCCGGACTGCAGGATGTGTGTCCCGTCCACAGGGGGCGCTCCAACACTCAACTCACACTGGCCAACATGAACATAATGCTCTCTGTGGAAAACATCAAGCGTCTGAACCAGGCTCTGTTCCCTCCGTCCAGCGGCGGCATGCAGGCGCTGTGTGAAGAAGGTTTCAGAGACGCGGTGGGCTTCCTCAAGAGAGAGGACTGGATGAGCTCATGACGCTCATTTTTTATTCTATGAACAAGCATGAAGCCAAGTACCTTTCACGGAAATGTGACAATggattttatgtatttattccctCTTAGGGTTCAACAGTAAGGGTGAAATATAACAACCAAAGTTTGAATCATTTCTTCCGATCATCATCGTATTATAAATGACTCCATTGCTCTCGCCCATGTTGGAGGAGGGTTTGTTGAACgatttgatttgaatgtgcCTCTGGCCAATCAAGAATTTAGATGGACAAGGGCACATTTAGTTTTAAGCTTTCGCCAAAGTTGCAGtgatggaaagtaactaagtacatttactccagtactgtacttcagtccaaatgttgaggtacttgtactttacttgagtcttttcttttcatgccactttctacttctactcc
>XM_039793144.1
GTTTAGTGTTTAGTGTGTCCGGTTCGGCGGCCGTGTGGAAACACATGCTAACCTTCCGTGTTTACGTTTACATGGAGCAGTAACGAGTTGTAGTTTTGCCGTTACCGGTAAATAAATCCAAGACAAAATGAGGTGTGGAGGATGCCGGTCCTGAACTTGTCCTTCGCTGCGTGTGGTTTTTTGGGGATCTACCAGCTGGGAGCAGTGGGAGCTTTCCTCCGCCACGGAGACCGGCTGCTGGGATCCCTCGGGGCCTGCGCCGGGGCATCAGCCGGCGCCCTGGTGGCTGCCGTGATGATCACAGCGCCCGACAAGTTGGAGAACTGTAAAGAGTTCACGTACCGGTTCGCTGACAGCGTGAGACGGCAGTCGTTTGGAGCCGCCACGCCGGGATACGACTTCATGCTCACACTGCGGGAGGGGATAGAAGAGATTCTGCCCAGCGAGGCTCACCGTCTGGCCGCCGGCCGCCTCCACGTCTCCGTCACTAACTCCACAAGTGGCCGCAACCACATCCTGTCCCGGTTCTCCTCCAGGGAGGAACTCATACAGGCTCTGCTGGCCAGCAGCTTTGTGCCGTTCTACGCAGGACTCAAACCGGTGGAATTACGAGGACAGaaatggatggatggagggttCTCCGACAGCCTGCCTATTCTGCCGGTGGGACGAACCATCACTGTGTCTCCGTTTGCCGGACTGCAGGATGTGTGTCCCGTCCACAGGGGGCGCTCCAACACTCAACTCACACTGGCCAACATGAACATAATGCTCTCTGTGGAAAACATCAAGCGTCTGAACCAGGCTCTGTTCCCTCCGTCCAGCGGCGGCATGCAGGCGCTGTGTGAAGAAGGTTTCAGAGACGCGGTGGGCTTCCTCAAGAGAGAGGACTGGATGAGCTCATGACGCTCATTTTTTATTCTATGAACAAGCATGAAGCCAAGTACCTTTCACGGAAATGTGACAATggattttatgtatttattccctCTTAGGGTTCAACAGTAAGGGTGAAATATAACAACCAAAGTTTGAATCATTTCTTCCGATCATCATCGTATTATAAATGACTCCATTGCTCTCGCCCATGTTGGAGGAGGGTTTGTTGAACgatttgatttgaatgtgcCTCTGGCCAATCAAGAATTTAGATGGACAAGGGCACATTTAGTTTTAAGCTTTCGCCAAAGTTGCAGtgatggaaagtaactaagtacatttactccagtactgtacttcagtccaaatgttgaggtacttgtactttacttgagtcttttcttttcatgccactttctacttctactcc

Function

symbol description
pnpla4 Predicted to enable triglyceride lipase activity. Predicted to be involved in lipid homeostasis and triglyceride catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in cytoplasm; lipid droplet; and membrane. Orthologous to human PNPLA4 (patatin like phospholipase domain containing 4).

NR:

description
PREDICTED: patatin-like phospholipase domain-containing protein 4

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11157 PNPLA4; patatin-like phospholipase domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793142.1 True 1372 mRNA 0.52 7 19749071 19755962
XM_039793143.1 False 1333 mRNA 0.52 7 19749071 19755962
XM_039793144.1 False 1309 mRNA 0.52 7 19749071 19755969

Neighbor

gene id symbol gene type direction distance location
aox6 NA coding downstream 94759 19622102 ~ 19654312 (-)
bzw1a LOC107384676,LOC108245120,LOC107082828,LOC103371116,LOC101480137,LOC103457358 coding downstream 127420 19608622 ~ 19621651 (-)
kynu kynu,LOC102785701 coding downstream 167813 19551436 ~ 19581258 (-)
acvr2ab acvr2a,LOC102784913,LOC103371821 coding downstream 1226055 18465948 ~ 18523016 (-)
LOC120554003 LOC103370269 coding downstream 1346858 18357104 ~ 18402213 (-)
dhrsx dhrsx,LOC104961879,LOC108244136,LOC106908010,LOC106908011 coding upstream 619624 20375593 ~ 20380492 (-)
LOC120554635 LOC104961873,LOC103363323 coding upstream 687012 20442981 ~ 20456063 (-)
LOC120554361 NA coding upstream 1038377 20794346 ~ 20802270 (-)
vps16 vps16 coding upstream 1097596 20853565 ~ 20867800 (-)
dytn NA coding upstream 1209969 20965938 ~ 21075255 (-)
G236103 NA non-coding downstream 26166 19720632 ~ 19722905 (-)
G236100 NA non-coding downstream 49993 19696468 ~ 19699078 (-)
G236094 NA non-coding downstream 81079 19663910 ~ 19667992 (-)
G236055 NA non-coding downstream 114065 19634730 ~ 19635006 (-)
G236054 NA non-coding downstream 114716 19634104 ~ 19634355 (-)
G236152 NA non-coding upstream 117208 19873177 ~ 19873387 (-)
G236155 nlgn4x non-coding upstream 157340 19913309 ~ 19913970 (-)
G236156 nlgn4 non-coding upstream 221853 19977822 ~ 19978682 (-)
G236157 nlgn4x non-coding upstream 226736 19982705 ~ 19986993 (-)
G236175 NA non-coding upstream 283032 20039001 ~ 20039265 (-)
G236111 sts,LOC108241831 other downstream 16534 19731319 ~ 19732537 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other downstream 219829 19523504 ~ 19529242 (-)
LOC120554371 mbd5,LOC102784158 other downstream 1309653 18404226 ~ 18439418 (-)
LOC120554370 LOC103370263 other downstream 1421968 18271078 ~ 18327103 (-)
s100b LOC103360204,LOC104927403 other downstream 2003814 17734731 ~ 17745257 (-)
G236277 adarb1,adarb1b,LOC105907970,LOC107754003 other upstream 611372 20367341 ~ 20368433 (-)
G236340 NA other upstream 970434 20726403 ~ 20728427 (-)
G236349 NA other upstream 1004739 20760708 ~ 20760992 (-)
rgn LOC103371141 other upstream 1087523 20843492 ~ 20853383 (-)
G236646 NA other upstream 1106711 20862680 ~ 20863311 (-)

Expression


Co-expression Network