vps16 (vps16)


Basic Information

Item Value
gene id vps16
gene name vps16
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20853565 ~ 20867800 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793201.1
gcGGCCTCCTTTGGGAAGTGTTTCCTGACTGACTTCAGTCCTGATGCGTTCGTGTCGACCTGCAGAGAACTCAGAGTCCTGAACgctgtcagagagagaggagtcggactgcctctcacacacacccaaTTCAAACAGTTGACCCTACAGGTTCTCATCGACAGgttgGTGTATCGGCAGTTCTATCCGTTAGCGATAGAGGTGTGTCGGTACCTGAAGATCCCAGACTATCAGGGAGTCAGCAGAGTCCTCAAACACTGGGCTTCCTGCAAGGTGCAGCAGAAGGACCTATCAGACGAGGCCATTGCCCGAgcagtgtgtgtgaaggtgggAGACTCGCCTGGTGTTTCCTACTCGGACATCGCCGCTAAAGCTTACGAATGTGGACGCACCGAGCTCGCCATCAAGCTGTTGGACTCTGAGGCTCGGTCCGGGGAGCAGGTCCCTCTGCTGCTGAAGATGAAGAAGAGTCAGCTGGCGCTCAGCAAAGCTGTGGAGAGTGGAGACACAGACCTCGTGTACACCGTGGTGACGTATCTGAAGAACGAGATGAACAGAGGAGACTTCTTCATGACTCTGAGGAACCAACCGGTCGCTCTCAGCCTCTACAGACAGTTCTGTAAGCTGCAGGAACAGGAAACTCTGAAGGACCTTTATAACCAGGACGATGATCACCAGGAACTGGCCAATTACTACGTTACAGCTAGTTACAGAGAAAAGaggTTAGATAGCCGTCTGTCTCTCCTGCAGTCTGCTGTGGATGAATACAACAAGGCCAAGAACGAGTTCTCTGCAAAGGCTACGGAGGAAGAGATGCGTCTCCTACGTATCCAACGCAAACTGGACGAAgaaaagggggcggggcttctgGGACTGTCTCTGCAGgcgaCCATAGAGGCTCTGCTGGCGTTGGGACTCCACAAACAGGCGGAGCAGCTTTACCGAGACTTCAGAGTTCCTGACAAGaggttttGGTGGCTGAAGCTGAAGTCTCTGGCGGAGAAAGAGGAGTGGGAGGAGTTAGAGAAGTTCTCAAAGAGCAAGAAGTCTCCCATTGGCTACCTGGCGTTTGTCGAGGTCTGCATGAAGAGCAACAACAAGCACGAAGCCAAGAAGTACGTTTCCAAGGTTACGCCGGAGCAGAGGGTCAAAGCCCACCTGGCCGTCGGagacctggaGGGCGCTGCGGACGCCGCCATCGAGCGTAAGAGCGACTCCGAGCTCGCCGCTGTCCTCGCCAAATGCCCCGCCTCCGACCGCCAGCTGGTCGACCGGCTGAACCGCGCCGCCGCCACGGCTGCCAAAAAGTGATCCCATCCACAGAAACAGCAGAAGGTCCGCTGCCAGAAAGTGATCCTTAGCCGATGTATATAGTAATCGTATTGAGATATTAATTGTTActttaaacatgttttcttcttcagtggtttcccccccccctcctctgtgTGTATCAGAACTGTAAACACTtcctgttgttgctgcttcacaataaaagcctttcAACAGAGAA
>XM_039793202.1
gcGGCCTCCTTTGGGAAGTGTTTCCTGACTGACTTCAGTCCTGATGCGTTCGTGTCGACCTGCAGAGAACTCAGAGTCCTGAACgctgtcagagagagaggagtcggactgcctctcacacacacccaaTTCAAACAGTTGACCCTACAGGTTCTCATCGACAGgttgGTGTATCGGCAGTTCTATCCGTTAGCGATAGAGGTGTGTCGGTACCTGAAGATCCCAGACTATCAGGGAGTCAGCAGAGTCCTCAAACACTGGGCTTCCTGCAAGGTGCAGCAGAAGGACCTATCAGACGAGGCCATTGCCCGAgcagtgtgtgtgaaggtgggAGACTCGCCTGGTGTTTCCTACTCGGACATCGCCGCTAAAGCTTACGAATGTGGACGCACCGAGCTCGCCATCAAGCTGTTGGACTCTGAGGCTCGGTCCGGGGAGCAGGTCCCTCTGCTGCTGAAGATGAAGAAGAGTCAGCTGGCGCTCAGCAAAGCTGTGGAGAGTGGAGACACAGACCTCGTGTACACCGTGGTGACGTATCTGAAGAACGAGATGAACAGAGGAGACTTCTTCATGACTCTGAGGAACCAACCGGTCGCTCTCAGCCTCTACAGACAGTTCTGTAAGCTGCAGGAACAGGAAACTCTGAAGGACCTTTATAACCAGGACGATGATCACCAGGAACTGGCCAATTACTACGTTACAGCTAGTTACAGAGAAAAGaggTTAGATAGCCGTCTGTCTCTCCTGCAGTCTGCTGTGGATGAATACAACAAGGCCAAGAACGAGTTCTCTGCAAAGGCTACGGAGGAAGAGATGCGTCTCCTACGTATCCAACGCAAACTGGACGAAgaaaagggggcggggcttctgGGACTGTCTCTGCAGgcgaCCATAGAGGCTCTGCTGGCGTTGGGACTCCACAAACAGGCGGAGCAGCTTTACCGAGACTTCAGAGTTCCTGACAAGaggttttGGTGGCTGAAGCTGAAGtctctgtaacctgtctgtctctctacctgtctgtctgcaggttttGGTGGCTGAAGCTGAGGtctctgtaacctgtctgtctcttt

Function

symbol description
vps16 Predicted to enable actin binding activity. Predicted to be involved in endosomal transport and vacuole fusion, non-autophagic. Predicted to act upstream of or within intracellular protein transport and vacuole organization. Predicted to be located in early endosome; late endosome membrane; and lysosomal membrane. Predicted to be part of HOPS complex. Predicted to be active in endosome. Human ortholog(s) of this gene implicated in dystonia. Orthologous to human VPS16 (VPS16 core subunit of CORVET and HOPS complexes).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 16 homolog

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20180 VPS16; vacuolar protein sorting-associated protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793201.1 True 1513 mRNA 0.54 13 20853565 20867800
XM_039793202.1 False 1076 mRNA 0.53 11 20854791 20867800

Neighbor

gene id symbol gene type direction distance location
LOC120554361 NA coding downstream 51295 20794346 ~ 20802270 (-)
LOC120554635 LOC104961873,LOC103363323 coding downstream 397502 20442981 ~ 20456063 (-)
dhrsx dhrsx,LOC104961879,LOC108244136,LOC106908010,LOC106908011 coding downstream 473073 20375593 ~ 20380492 (-)
pnpla4 pnpla4 coding downstream 1097596 19749071 ~ 19755969 (-)
aox6 NA coding downstream 1199253 19622102 ~ 19654312 (-)
dytn NA coding upstream 98138 20965938 ~ 21075255 (-)
ftcd ftcd coding upstream 123090 20990890 ~ 21003269 (-)
LOC120554641 LOC103473932 coding upstream 259094 21126894 ~ 21149363 (-)
LOC120554016 NA coding upstream 784166 21651966 ~ 21691088 (-)
LOC120554648 NA coding upstream 832905 21700705 ~ 21725016 (-)
G236560 NA non-coding downstream 11820 20839612 ~ 20841745 (-)
LOC120554363 NA non-coding downstream 14798 20824834 ~ 20838767 (-)
G236644 NA non-coding downstream 22829 20830357 ~ 20830736 (-)
LOC120554364 LOC100693318,LOC101465085,LOC102292591 non-coding downstream 28750 20821734 ~ 20824815 (-)
G236569 NA non-coding downstream 51917 20801362 ~ 20801648 (-)
G236621 NA non-coding upstream 3200 20871000 ~ 20871638 (-)
G236607 NA non-coding upstream 3327 20871127 ~ 20874204 (-)
G236559 NA non-coding upstream 13119 20880919 ~ 20882181 (-)
G236649 NA non-coding upstream 26440 20894240 ~ 20896132 (-)
LOC120554667 LOC108242155 non-coding upstream 52780 20920580 ~ 20927156 (-)
rgn LOC103371141 other downstream 182 20843492 ~ 20853383 (-)
G236349 NA other downstream 92573 20760708 ~ 20760992 (-)
G236340 NA other downstream 125138 20726403 ~ 20728427 (-)
G236277 adarb1,adarb1b,LOC105907970,LOC107754003 other downstream 485132 20367341 ~ 20368433 (-)
G236111 sts,LOC108241831 other downstream 1121028 19731319 ~ 19732537 (-)
LOC120554644 NA other upstream 25114 20892914 ~ 20920498 (-)
arl11 NA other upstream 73188 20940988 ~ 20951865 (-)
LOC120554013 LOC103366577 other upstream 333196 21200996 ~ 21242177 (-)
LOC120554014 NA other upstream 432481 21300281 ~ 21557021 (-)
LOC120554015 NA other upstream 767048 21634848 ~ 21651918 (-)

Expression


Co-expression Network