G40442


Basic Information

Item Value
gene id G40442
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 20265840 ~ 20266366 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU54379
gttgaagtccGGGATGGGGTTGAAAGCTCGTGCCCTCCATGTTGTCACCGGCTGGAAAAGAGAGTTCAAAACTCAAAATGAAAGCTGAAATTGACTTATCGAATCGGGCGTCCTCAGCATCCGGCTACACGCTCAATAACGCGCATTTCCATGTCACCGGAGAAGCTTCCCAGCGCGTCCATTCACAAAACTGACGCTGCTGAATTTGCAAGGGCTGTTGTAAGCAGACGCAATTACAGTCGACAACTCCTAGACTTAAAACTCGTATTATCCAACGTATAATCACCGGGTAGCCTACCGTGTTTCTATGCGCTCCTGCGGTTTTACGCACTCCTAATGTGCGCTCGAAATATGCCTCGTCTGCTCCGTCTGGCGTACTCTCAGTCTGTCTCCCCACTCACTCAATgtgtgagtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctttcgccctctctgtttgtttgtgtctggttCAGTCATTGAATCCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54379 True 527 lncRNA 0.50 1 20265840 20266366

Neighbor

gene id symbol gene type direction distance location
si:dkey-183j2.10 LOC104951540,LOC103362943 coding upstream 41823 20218566 ~ 20224017 (+)
mon1bb NA coding upstream 61987 20197989 ~ 20203853 (+)
glyctk glyctk coding upstream 70091 20187655 ~ 20195749 (+)
hemk1 hemk1 coding upstream 98049 20161369 ~ 20167791 (+)
si:ch211-161c3.5 calml6,c5h3orf18,clg5h3orf18,LOC104956351 coding upstream 377108 19877422 ~ 19888732 (+)
ppcs ppcs coding downstream 235263 20501629 ~ 20504671 (+)
si:dkey-264d12.5 NA coding downstream 257861 20524227 ~ 20546846 (+)
LOC120556874 NA coding downstream 324643 20591009 ~ 20603889 (+)
si:ch73-130a3.4 NA coding downstream 396960 20663326 ~ 20670676 (+)
mmel1 mmel1,LOC102790517 coding downstream 414622 20680988 ~ 20700924 (+)
G40433 NA non-coding upstream 38024 20227337 ~ 20227816 (+)
G40357 NA non-coding upstream 108315 20156854 ~ 20157525 (+)
G40352 NA non-coding upstream 118857 20146735 ~ 20146983 (+)
G40339 NA non-coding upstream 143970 20068278 ~ 20121870 (+)
G40284 NA non-coding upstream 503342 19761173 ~ 19762498 (+)
G40479 NA non-coding downstream 152774 20419140 ~ 20423496 (+)
G40488 NA non-coding downstream 225628 20491994 ~ 20531354 (+)
G40592 NA non-coding downstream 456856 20723222 ~ 20725950 (+)
LOC120557890 NA non-coding downstream 459728 20726094 ~ 20731954 (+)
LOC120558155 NA non-coding downstream 500616 20766982 ~ 20767927 (+)
G40353 rassf1,LOC102778369 other upstream 117150 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 342291 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 406499 19851548 ~ 19859341 (+)
sema3fa LOC103360486,LOC102793610,LOC100701195,LOC102213718,LOC102288772,LOC101468868 other upstream 524451 19687671 ~ 19741389 (+)
LOC120557344 LOC104966310 other upstream 633321 19617181 ~ 19632519 (+)
vgll4b vgll4 other downstream 1028736 21295102 ~ 21343711 (+)
itga7 itga7 other downstream 1684010 21950376 ~ 21992611 (+)
cbfa2t2 cbfa2t2 other downstream 3468582 23734948 ~ 23771932 (+)
znfx1 NA other downstream 3581681 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 4289159 24555525 ~ 24560318 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003487 NA non-coding NC_007122.7 CM002895.2 25829370 ~ 25830337 (+)