G46134 (LOC104947167)


Basic Information

Item Value
gene id G46134
gene name LOC104947167
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 903558 ~ 907128 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU61748
aaattagcctgaagctaatgcttaccggttcaggaggaaataagccaattctgcgtccttttgggctctaagctgtctccatctttcaaatacatctccaatatttaccacggggttgttacgtctctggtcacgcaactgttagaaaaatgctgttttcttttttttaggtcgggtagaatctatctctgttgatcctgttcgtttgtgtgctgctttcaattcaattcaattttatttatagtatcaaatcataacataagttatctcgagacactttacagatagagtaggtctagaccacactctataatttacaaagccccaacaattccaacaattccagtaattccctcaagagcaagcagtgcgacagtggcgaggaaaaactccctcttgggaagaaacctcggacagacccaggctcttggtaggcggtgtctgacgagccggttgggggtgtgatgaacagtggcgatagtagtcacattaataatggaacagtgactggatgtagcgggaagctgcagggttcagcaggacgcagcatgacattgcagggcatcgctgagctcagcagggagtgcagcaggaccacggcgacagctgcaaccagggtcttgtgccaacgttctccaaggaaatacgctgggggaaaaaaaagcataaggactccggggagtaaactccccagaagctaggattagtaacaagcatttctgggacgggctgcacacaaatagtaatagtaacagtaatagaaacagtaatagaaagggagaggagagagcagctcagtgtgtcaaaggaaggaagtcccccggcagtctaggactataacagcgtaactataacaggtaactaagagagacaggtcataaggagaggtagctttttcgggcttagaactctccccctgccggatctggctttgctggcctgcctccctctactttgttatgtattattaatctaacaattatgaagagaagcagttgggccagttaggtgaacactgcaactcctcactccctaactataagctttatcaaataggagagttttaagttcattcttgaatgaggtgacagtttctgccccccgaacccagatcgggagctggttccataggagaggagcctgataactgaaggctctagctcccattctacttttagagactctaggtaccaccagtaactctgcattctgggagcgcagtgctctagtaggacaatagggtattaggagctcttctagatatgatggtgctagaccatttagagctttgtaggtcaagagaaggactttaaactcaatcctggattcaacaggaagccaatgcagagaagctaatacaggagaaatatgatctcttttcttagttcttgtgagaacacgcgctgcagcattctggatcagctggagagtcttaagactcttatttgagcaacctgacagtagggaattacaatagtccagcctggaagtaacaaatgcatggactagtttttcagcgtcgttttgagacaggatattcctaattttggcaatgttacgaagatgaaaaaaggctgttcttgaggtttgaggctttcatggctgtactaccgttacagctgtagcgtgctgagtttacgtttttacaggtatatctggcaacccagcctggctgtcaaactgggccgttgataacaacacacagatcaaaacataaacataaattccgtcacggaatgtaaatttcaaaaagaaaaatactgaaattagcattgttgtcagaaaagatagtatttcagtttaacatgtttccttaatatctgatgaggcattggtgtcatttttggatttattacagtacaaatattacatattggacctttaatgtgtatttgtgttattctgatgtgtgtacgtGTACTGAAGACAAAAACTATCAGTCCGTTGTCGACAGGATTCGAACCTGCGCGGGGAGACCCCAATGGATTTCTagtccatcgccttaaccactcggccaaAGATGGGGCAAAAGGGACTGCTAGGAGGGgggaaggaaaaaggaaaaagggggggaaaggaggggggagagagagaggacaaatGAGAAAGTCGCCGGTTCGATCCCCGATTGAAACATTTCTCAATTAACGCACACTTTTATAAAGTGCTATGAATTCATCAAATATAACTTCCAAACAGATACAAATAGGATTGAAGCTGGGGCAATTGGTAAGAATAACAATAATGCTTTGttgtgataataataaaaaatagaatatattataaattcaattttaattaAATACTGATTAGGCCAACAAGGTGCACACTCCTGCCAGGATTTGCACCTGGATCTTCCACCCAAAGGATGGATGTGTTACACCAcaagagttgtgtgtgttttttttaaagaacacaAACATCTCCAATAAAgagatttatgtgtgtgtttttttttttaaaagaacacACAAAACTCCAATAAACCGTTAACGTAAACATAGATAAACATAAGATAACATAAACACTTTGAATAGAAATAACACAATGTATGGGCTTGTTATGGAACATCAAAGTGCAGCACAAttataaaaactataaaaaacaactatatacagtacatatgtaTTCTATAATGAGGTCTTCCACTCTGTGATGGTCTGTCCAGATGCAGGACAGTACCATTTCCCCCGTAACTGTGTATGGCCAGTAAGTTTGCTCTTTGACTGAccacatattttacactgaTAGTGGTAGCTTTCTTTGGTTTGCCGCTTCTTGGGGATCACCTCTTATCTCTCGCTCCTTATCCTCCAGGGTTGCCTTTCGCAATCTCCATTCTCGGAACCGATTGAGAGAAGCTAGTGGTGCTGGGGCTGGCTGGTAAGGAAGCCCGCCTTGAGGTTGAGGTGTTGGAGCTGGTGGCGGTTGATCATGATGGCCACCATGGGAGTGAGAAGCTGGCACTGGTGGCAACTGGTAAGGGGACCAGCCCTGAGAGTGAGACGCTGGAGCAGGTGACGGCTGGTAAGGGGACCAGCCCTGAGAGTGAGACGCTGGAGCAGGTGACTGCTGGTAAGGGGACCAGCCCTGAGAGTGAGACGCTGGAGCTGAGTGTTGACCCTGCTGGCAGTAGGCAACATCCGACAAAGCAGGGAAGACAGCATCCCCAGGCCAGTGCTGTGCTCTCGGCCAGTCCTGATCTGCATTGGTTGAGCTGGCACCAGCTCCAGTGTCTGTGTGCACAGTGGGAAACACCGCTCTGGCACAGCGACGTTTACGAATCACTGCCTCACCCTCACGGTTTTCTGGTTCCTGGAACTCCATAACTGTATTAGCACGTTGAACAGGCTCGGATGGTAGGTCCCGGGCCTCCAGGAGCGATTCCTCTGCCAAATGGACCTGCTGAGGAAGCTGCACCCCTTGCAGTAACGAATCGCGGTCGGTTCTCTTCTGCCGATCCTGCAGC

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104947167, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61748 True 3469 lncRNA 0.45 2 903558 907128

Neighbor

gene id symbol gene type direction distance location
ptk6b NA coding upstream 55936 825255 ~ 847622 (+)
zgc:194282 srms,LOC103385165 coding upstream 82378 782791 ~ 821180 (+)
LOC120558328 nol4l,LOC103385166,LOC103361530 coding upstream 132502 558217 ~ 771056 (+)
commd7 commd7,LOC102794680 coding upstream 417663 476464 ~ 485895 (+)
vps13d vps13d coding upstream 693821 74750 ~ 209737 (+)
LOC120558777 LOC102225534,LOC103148188,LOC103148186,LOC103356007,LOC103385155 coding downstream 31848 938976 ~ 986271 (+)
trim101 NA coding downstream 77041 984169 ~ 1010837 (+)
LOC120558589 LOC103356004 coding downstream 108260 1015388 ~ 1045239 (+)
adrm1 NA coding downstream 141844 1048972 ~ 1053010 (+)
LOC120558473 LOC103372586 coding downstream 661167 1568295 ~ 1608445 (+)
G46133 NA non-coding upstream 88 902816 ~ 903470 (+)
G46132 NA non-coding upstream 880 902439 ~ 902678 (+)
G46078 NA non-coding upstream 32319 862191 ~ 871239 (+)
G46042 NA non-coding upstream 401999 501349 ~ 501559 (+)
LOC120559841 NA non-coding upstream 527085 375096 ~ 376473 (+)
G46154 NA non-coding downstream 10964 918092 ~ 918334 (+)
G46156 NA non-coding downstream 13116 920244 ~ 961803 (+)
G46160 NA non-coding downstream 88246 995374 ~ 1054320 (+)
G46227 NA non-coding downstream 291882 1199010 ~ 1199211 (+)
G46249 NA non-coding downstream 409472 1316600 ~ 1317598 (+)
G46066 ppdpf,LOC106937393,LOC103148182,LOC103356003 other upstream 3262 793902 ~ 900296 (+)
LOC120559832 rps21 other downstream 329187 1236315 ~ 1247771 (+)
G46238 NA other downstream 370160 1277288 ~ 1284379 (+)
G46305 NA other downstream 615557 1522685 ~ 1523231 (+)
G46328 NA other downstream 728820 1635948 ~ 1638170 (+)
LOC120559409 NA other downstream 1298213 2205341 ~ 2232659 (+)

Expression


Co-expression Network