LOC120559832 (rps21)


Basic Information

Item Value
gene id LOC120559832
gene name rps21
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 1236315 ~ 1247771 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU61880
ccgttcccaaaagttctccaaaggaatgttcccagatggatatgccgagcaaatgggAAGCGATCTGTCTGGAGGAGTCAGGTTAACAGGACGCACTTTATGCAAGCAAGGAGCACTTGGCCCATTTACATCTTTCATTTGTTATTAGGAAATGACAACAAGGGCAAAGAAAGTTTTtggttttatcattttattttgacaaAAGTGTCCACTGCTCCAGCATCACTCTTAGAAGTTCTTTGCAACAATGCTATCCTCCCTTGCCAGCCTCAGGATGGAGTCATCGGACTCACCCATTCTGCGGATGGCGCCACAGATAGCGTAGGTCTTGAACTGACCGTTGAAGCGGCCGGTCACCTTGTCAACCTCAGCAATGTTGATCTGCACAGAGGCGTGGTCCTTGGCTCCGATGATTCTGTTGCTAGCAGAGCATTTCCGTGGGACGTAAAGGTCCACAAATTCACCAGCGTCGTTCTGCATGTTTACAGGTTGTCCACGCGGTCGGTTACAAATCGTATGCGACAAATGGCCGACAGGGAAAGGAAGAGAAGGCGACCCGGAAGGAGAATAACTCTTTCTAGTGTTTACGTCGCCACCATGAATTGTTGCCCCCTGTTGGATGTTGGTATCTTCAAATCGATCTAT
>TU61887
ATTACAAACATTTGCCTGTCCTTATCCTTTCTCTTGTGCCTCAGCTGCCATTGGAACCTGACTCCTGCTACCGCTTCACTCCTGCCATCCACCGGAGCAGACAGCCACCCCCACTGGACCCCCCACCACTAGCCGGCCTACTGTGTTCCTCTGACGGACCCGCTCCTTCCCAGAAAGCACCGACCCGTTCTCCATCCTGGAAACTTTGACGTGCTTTTCCCCCCTCAGAAACCTG
>XR_005639370.1
GTCGGCGCGGGCagttagccagctagctagcacaccAGTTAGCACACGGAGCGGGCCGCATGTGGCTGCTCACACACTCGACCAACGTCTGATATTTACACATCATTTCTGCCCTAAACACCAACCAAAGGCCACCTACGACTACATAGTCACCTTAACTTTGACAAAGTGTAAGAAAATGACAGTTATGTAGGGACAGAATGTGAATTTTAAGCGTTTTTAAGAAGAGAGCTCGATGGAAACACACCGTATGCGACAAATGGCCGACAGGGAAAGGAAGAGAAGGCGACCCGGAAGGAGAATAACTCTTTCTAGTGTTTACGTCGCCACCATGAATTGTTGCCCCCTGTTGGATGTTGGTATCTTCAAATCGATCTATGCTGCCATTGGAACCTGACTCCTGCTACCGCTTCACTCCTGCCATCCACCGGAGCAGACAGCCACCCCCACTGGACCCCCCACCACTAGCCGGCCTACTGTGTTCCTCTGACGGACCCGCTCCTTCCCAGAAAGCACCGACCCGTTCTCCATCCTGGAAACTTTGACGTGCTTTTCCCCCCTCAGAAACCTGGACtcgatactttaaataaaacctgttaATTCACA

Function

symbol description
rps21 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within translation. Predicted to be located in polysomal ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS21 (ribosomal protein S21).

NR:

description
PREDICTED: 40S ribosomal protein S21

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61880 True 645 TUCP 0.48 6 1236315 1245218
TU61887 False 235 lncRNA 0.57 1 1247502 1247736
XR_005639370.1 False 606 lncRNA 0.51 2 1244840 1247771

Neighbor

gene id symbol gene type direction distance location
adrm1 NA coding upstream 183305 1048972 ~ 1053010 (+)
LOC120558589 LOC103356004 coding upstream 191076 1015388 ~ 1045239 (+)
trim101 NA coding upstream 225478 984169 ~ 1010837 (+)
LOC120558777 LOC102225534,LOC103148188,LOC103148186,LOC103356007,LOC103385155 coding upstream 250044 938976 ~ 986271 (+)
ptk6b NA coding upstream 388693 825255 ~ 847622 (+)
LOC120558473 LOC103372586 coding downstream 320524 1568295 ~ 1608445 (+)
LOC120559387 NA coding downstream 1165800 2413571 ~ 2420858 (+)
LOC120558519 NA coding downstream 1301168 2548939 ~ 2550724 (+)
LOC120558523 NA coding downstream 1398121 2645892 ~ 2647467 (+)
LOC120559413 NA coding downstream 1413801 2661572 ~ 2662342 (+)
G46227 NA non-coding upstream 37104 1199010 ~ 1199211 (+)
G46160 NA non-coding upstream 181995 995374 ~ 1054320 (+)
G46156 NA non-coding upstream 274512 920244 ~ 961803 (+)
G46154 NA non-coding upstream 317981 918092 ~ 918334 (+)
G46134 LOC104947167 non-coding upstream 329187 903558 ~ 907128 (+)
G46249 NA non-coding downstream 68829 1316600 ~ 1317598 (+)
G46252 NA non-coding downstream 86705 1334476 ~ 1334791 (+)
LOC120558411 NA non-coding downstream 103959 1351730 ~ 1352130 (+)
G46258 NA non-coding downstream 117349 1365120 ~ 1367303 (+)
G46259 NA non-coding downstream 119866 1367637 ~ 1368791 (+)
G46066 ppdpf,LOC106937393,LOC103148182,LOC103356003 other upstream 336019 793902 ~ 900296 (+)
G46238 NA other downstream 29517 1277288 ~ 1284379 (+)
G46305 NA other downstream 274914 1522685 ~ 1523231 (+)
G46328 NA other downstream 388177 1635948 ~ 1638170 (+)
LOC120559409 NA other downstream 957570 2205341 ~ 2232659 (+)
LOC120558501 NA other downstream 1089565 2337336 ~ 2339429 (+)

Expression


Co-expression Network