G46340


Basic Information

Item Value
gene id G46340
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 1688087 ~ 1688318 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU62058
ttttctttaagaagccctcctgttctccactcattacctgtattaactgcacctgtttgaacttgttacctgtataaaagacacctgtccacacactcaatcaaacagactccaacctctccacaatggccaagaccagagagctgtgtaaggacatcagggataaaattgtagacctgcacaaggctgggatgggctacaggacaataggcaagcagcttggtgagaaggg

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU62058 True 232 lncRNA 0.46 1 1688087 1688318

Neighbor

gene id symbol gene type direction distance location
LOC120558473 LOC103372586 coding upstream 79642 1568295 ~ 1608445 (+)
adrm1 NA coding upstream 635077 1048972 ~ 1053010 (+)
LOC120558589 LOC103356004 coding upstream 642848 1015388 ~ 1045239 (+)
trim101 NA coding upstream 677250 984169 ~ 1010837 (+)
LOC120558777 LOC102225534,LOC103148188,LOC103148186,LOC103356007,LOC103385155 coding upstream 701816 938976 ~ 986271 (+)
LOC120559387 NA coding downstream 725253 2413571 ~ 2420858 (+)
LOC120558519 NA coding downstream 860621 2548939 ~ 2550724 (+)
LOC120558523 NA coding downstream 957574 2645892 ~ 2647467 (+)
LOC120559413 NA coding downstream 973254 2661572 ~ 2662342 (+)
LOC120558526 NA coding downstream 1065195 2753513 ~ 2757047 (+)
G46339 NA non-coding upstream 9485 1678337 ~ 1678602 (+)
G46329 NA non-coding upstream 29162 1638395 ~ 1658925 (+)
G46325 NA non-coding upstream 57750 1629532 ~ 1630337 (+)
LOC120559421 samd3,LOC101476819 non-coding upstream 136119 1550170 ~ 1551968 (+)
LOC120559430 NA non-coding upstream 166760 1499504 ~ 1521327 (+)
LOC120559418 NA non-coding downstream 7924 1696242 ~ 1697615 (+)
LOC120559419 NA non-coding downstream 9295 1697613 ~ 1698290 (+)
G46352 NA non-coding downstream 48007 1736325 ~ 1738245 (+)
G46378 NA non-coding downstream 111598 1799916 ~ 1818908 (+)
G46380 NA non-coding downstream 149414 1837732 ~ 1838821 (+)
G46328 NA other upstream 49917 1635948 ~ 1638170 (+)
G46305 NA other upstream 164856 1522685 ~ 1523231 (+)
G46238 NA other upstream 403708 1277288 ~ 1284379 (+)
LOC120559832 rps21 other upstream 440316 1236315 ~ 1247771 (+)
G46066 ppdpf,LOC106937393,LOC103148182,LOC103356003 other upstream 787791 793902 ~ 900296 (+)
LOC120559409 NA other downstream 517023 2205341 ~ 2232659 (+)
LOC120558501 NA other downstream 649018 2337336 ~ 2339429 (+)
G46530 NA other downstream 701628 2389946 ~ 2390512 (+)
G46574 NA other downstream 1057580 2745898 ~ 2770453 (+)
LOC120559392 NA other downstream 1458163 3146481 ~ 3288089 (+)

Expression


Co-expression Network