LOC120559434


Basic Information

Item Value
gene id LOC120559434
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 2030045 ~ 2032073 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU62171
GTTCAATCTATGAAGAGGGTAAAGGGTTTAAAGTGGAACGCTGTACAGCTTGTTGTAAGCTGTTCCACTGCCCCCTTTGCCCCAAATACAAACCCAGCCAACGAGCCAAGCTTCAGCAGCACCTCGATGTTCACATTAAAAATGCTATTATATTCAAAGCCATGGCAAACAGTTTGCCCACTGGACAGACACAGCAAAGGCCATCCTGCGAGGTGAGGTGCCATCAGTGTTCCGTCTGAAGAAGCGGAAAATGGATGACGTCACTGAGggaGAGGATCAAGTACACCCTGTTTTGCAGCCTCCCGAAGCTAGGGATGAAAAAGATGTTGAGATGAAAATCAGCAGAGTGGGTGGAAACAAACCAGCATTTGTTTTCATCCAAGGTGGAGTTGCCCAGTGCAGTCGGAATGGGAGAGGAGGAAATGGAAGAAGCTGCAAAGCAGTATGCCAGACTTTGGTCTGAGGAGGAAAGTTCCAAGCTTGAGGAACTAGAGAAAGATGACATCCGGGAACCATTTAAGTTCAAATTCTCCACAATCGAGGACATGTGGCTGTTTTGTGATGAGATTTGTGACAAACAAGGATACTTGGCATATTGTGAATGTAAAGTGGAGTAGTAACATTAAATAAAAGCTTAGCTGCAACCACCAGCCTACTTTTTACATTCACAGGACTAATTGAGGACAttgttttttggggatttttttccTGTGTGCCAGTTAGTGTCCAAAACCAGCTGTAAGTTCAAAGATTACCTCTAGTTTTTATGTATTGTGATATCACCA
>XR_005639276.1
ccatcttggtcCATCTTTCcattgttccaacaatcaccactctggtttggttgaaataaacccttaattcgaGGGGGGTCTGGCTGCAGACCTCCAGTGTCAGGCTGCCTCCAGTGTCAGGACCAGAAATAACAAACTTTTTGTGCGTGTCTTAAAGGAGTCTGGCGTATATATTGCGACTAAAAACAACGAAAAAGTAGGAGAAGAAGATTTATTGCCGCAGATTGACTACCATTGGGACAACAGTAAATaacaaatatgtatatatagatatagacataaacacacaccatATGTTTGCTGTTTTACTAGCCGCATTACGCACGCAAATTACCGAATGTTACTAACGTGGATGGGTTGTAATTTTTTACGCTAACGGTGGCTAACGGTTGACTGACGCTCAGGTTATTTGTTGTCTAAATGAAAATGACATGAGGATaagtttttaagtttttctaTCCTTCATTCCACTCATTTTATACTTTTACCAATtgaaatacatatattttaacGGCACTTTTTCTGTGTTATGTAGATGCATCGTTCAATCTATGAAGAGGGTAAAGGGTTTAAAGTGGAACGCTGTACAGCTTGTTGTAAGCTGTTCCACTGCCCCCTTTGCCCCAAATACAAACCCAGCCAACGAGCCAAGCTTCAGCAGCACCTCGATGTTCACATTAAAAATGCTATTATATTCAAAGCCATGGCAAACAGTTTGCCCACTGGACAGACACAGCAAAGGCCATCCTGCGAGGTGAGGTGCCATCAGTGTTCCGTCTGAAGAAGCGGAAAATGGATGACGTCACTGAGggaGAGGATCAAGTACACCCTGTTTTGCAGCCTCCCGAAGCTAGGGATGAAAAAGATGTTGAGATGAAAATCAGCAGAGTGGGTGGAAACAAACCAGCATTTGTTTTCATCCAAGGTGGAGTTGCCCAGTGCAGTCGGAATGGGAGAGGAGGAAATGGAAGAAGCTGCAAAGCAGTATGCCAGACTTTGGTCTGAGGAGGAAAGTTCCAAGCTTGAGGAACTAGAGAAAGATGACATCCGGGAACCATTTAAGTTCAAATTCTCCACAATCGAGGACATGTGGCTGTTTTGTGATGAGATTTGTGACAAACAAGGATACTTGGCATATTGTGAATGTAAAGTGGAGTAGTAACATTAAATAAAAGCTTAGCTGCAACCACCAGCCTACTTTTTACATTCACAGGACTAATTGAGGACAttgttttttggggatttttttccTGTGTGCCAGTTAGTGTCCAAAACCAGCTGTAAGTTCAAAGATTACCTCTAGTTTTTATGTATTGTGATATCACCATGTTTCTAGTTCTACACCCGTTTCTGCAGGTGTAGTTTTTGATATTTAGAATTTCTGTAAAGAAGATTGCAGTGccaatttgtcattttattttcattatttgtaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62171 False 785 lncRNA 0.44 4 2030587 2031967
XR_005639276.1 True 1433 lncRNA 0.41 4 2030045 2032073

Neighbor

gene id symbol gene type direction distance location
LOC120558473 LOC103372586 coding upstream 421600 1568295 ~ 1608445 (+)
adrm1 NA coding upstream 977035 1048972 ~ 1053010 (+)
LOC120558589 LOC103356004 coding upstream 984806 1015388 ~ 1045239 (+)
trim101 NA coding upstream 1019208 984169 ~ 1010837 (+)
LOC120558777 LOC102225534,LOC103148188,LOC103148186,LOC103356007,LOC103385155 coding upstream 1043774 938976 ~ 986271 (+)
LOC120559387 NA coding downstream 381498 2413571 ~ 2420858 (+)
LOC120558519 NA coding downstream 516866 2548939 ~ 2550724 (+)
LOC120558523 NA coding downstream 613819 2645892 ~ 2647467 (+)
LOC120559413 NA coding downstream 629499 2661572 ~ 2662342 (+)
LOC120558526 NA coding downstream 721440 2753513 ~ 2757047 (+)
LOC120559429 NA non-coding upstream 126667 1902564 ~ 1903378 (+)
G46383 NA non-coding upstream 153063 1876712 ~ 1876982 (+)
LOC120559438 NA non-coding upstream 178847 1849055 ~ 1851198 (+)
G46380 NA non-coding upstream 191224 1837732 ~ 1838821 (+)
G46378 NA non-coding upstream 211137 1799916 ~ 1818908 (+)
G46485 NA non-coding downstream 221013 2253086 ~ 2253741 (+)
G46488 NA non-coding downstream 223264 2255337 ~ 2255857 (+)
G46490 NA non-coding downstream 229718 2261791 ~ 2262110 (+)
G46492 NA non-coding downstream 244192 2276265 ~ 2276586 (+)
LOC120559436 NA non-coding downstream 250051 2282124 ~ 2288627 (+)
G46328 NA other upstream 391875 1635948 ~ 1638170 (+)
G46305 NA other upstream 506814 1522685 ~ 1523231 (+)
G46238 NA other upstream 745666 1277288 ~ 1284379 (+)
LOC120559832 rps21 other upstream 782274 1236315 ~ 1247771 (+)
G46066 ppdpf,LOC106937393,LOC103148182,LOC103356003 other upstream 1129749 793902 ~ 900296 (+)
LOC120559409 NA other downstream 173268 2205341 ~ 2232659 (+)
LOC120558501 NA other downstream 305263 2337336 ~ 2339429 (+)
G46530 NA other downstream 357873 2389946 ~ 2390512 (+)
G46574 NA other downstream 713825 2745898 ~ 2770453 (+)
LOC120559392 NA other downstream 1114408 3146481 ~ 3288089 (+)

Expression


Co-expression Network