LOC120559409


Basic Information

Item Value
gene id LOC120559409
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 2205341 ~ 2232659 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU62214
ttaggTATCAAGATTAACTATATAAAGAGAGAATATCTTCTTTTACTGAGTGAGAGTCATCAGCTTGTTGTTCCGTGTCAGCCAATCATCACCTCAGCAAAGATGGCATCAGGCTTTCCGTTTGCTTTGTTGCTCTGTTTGTCCATCGGACTGTTGGCTCCATCTTGTCGTGGACAAACCTCCTGCCCAGTCCCTGTCCTCCTGGTTGGACTCAGTTCGGCTCTCGctgtttcagtttcaacttCCAAGGAAAGAATTGGATCGATGCAGAGAACTTCTGCAAGGCCGCCGGTGGGAATCTGGCTTCAGTCCACTCAGAAGAGGAACACGTATTCCTCAAAACCTACATTAAGCAAGTGACCGGTGCAAACGGACGGGCCTGGATTGGAGGCTTTGACTCAGTGAAGAAGGGCGTGTGGATGTGGTCTGATGGATCCACAATTGACTACAAAAACTGGGATGTGGGGCAGCCTGACAACTTTGATGGAGAAGAGAACTGTCTTGAGATGAACTATCAGGGAAGGAACTGGAACGATGCGCCATGTGACCGTACTACAGTAATAATATTTCCTTTCCTGTGCGCCAAGAACCTGTGAGGCTTCCCGCCATCATGATCTCACTACAGCTCATCTATAATCTCTATCATTGATTCACTTTCAGTTTGTTCTGCAGACAGAAACAGCTctccgctgacagactcacttTCACTTGTTTATTTTCGGAAGAGTTAGGAAACAGTTCACATTTGAGTTTTAACGTTAGAAGGAAATTGACTCTCTGAGCTGGACAAAAACATAATCAGTTATTGGACTTTTAATCTAGTAAATAACACATAATGAAATACAGAAAAGATTCAAATACTCTGACATCTTTTCCATTTTAGTTTCCTGAATAGTGCCTgtcagctctgtccaaaggtaacaacatCCACCTACCAGACATGAGTGGTGAAGATCTTCTCTTCAAAAATGtccaaatagaaaataaaatccaaATGTTGTCTGAACGTTCTGTGATACAAGAGGAGTTTCTGGTGTGTTGggttctttctttttatttttttatttaacctttatttattcagggggagttcactgagaggcagcctctcttttgcaggaacgccctgatcacattcacacagttccacattcatacctggaagatgcccagtacaaccacagtctgatctgctggccactgagcagctccactggagccatgcacttcttcttcatctgtttTCCTTCACTTTATAATCAATAAgcattaaataataaaagacaTATTGTCACAGTGTCTGGTCCTGACTTATTGACTGTTGTTTTCTCTAAAG
>TU62215
ATCTTTTCCATTTTAAGTTTACTGAATATTGTCTgtcagctctgtccaaaggtaacaacatCCACCTACAGACATGAGTGGTGAAGATCTTCTCTTCAAAAATGtccaaatagaaaataaaatccaaATGTTGTCTGAACGTTCTGTGATACAAGAGGAGTTTCTGGTGTGTTGggttctttctttttatttttttatttaacctttatttattcagggggagttcactgagaggcagcctctcttttgcaggaacgccctgatcacattcacacagttccacattcatacctggaagatgcccagtacaaccacagtctgatctgctggccactgagcagctccactggagccatgcacttcttcttcatctgtttTCCTTCACTTTATAATCAATAAgcattaaataataaaagacaTATTGTCACAGTGTCTGGTCCTGACTTATTGACTGTTGTTTTCTCTAAAG
>XM_039801108.1
AAGCATCACCAATATCGATCAGTGattcaaacatgttttttaggTATCAAGATTAACTATATAAAGAGAGAATATCTTCTTTTACTGAGTGAGAGTCATCAGCTTGTTGTTCCGTGTCAGCCAATCATCACCTCAGCAAAGATGGCATCAGGCTTTCCGTTTGCTTTGTTGCTCTGTTTGTCCATCGGACTGTTGGCTCCATCTTGTCGTGGACAAACCTCCTGCCCAGGTCCCTGTCCTCCTGGTTGGACTCAGTTCGGCTCTCGctgtttcagtttcaacttCCAAGGAAAGAATTGGATCGATGCAGAGAACTTCTGCAAGGCCGCCGGTGGGAATCTGGCTTCAGTCCACTCAGAAGAGGAACACGTATTCCTCAAAACCTACATTAAGCAAGTGACCGGTGCAAACGGACGGGCCTGGATTGGAGGCTTTGACTCAGTGAAGAAGGGCGTGTGGATGTGGTCTGATGGATCCACAATTGACTACAAAAACTGGGATGTGGGGCAGCCTGACAACTTTGATGGAGAAGAGAACTGTCTTGAGATGAACTATCAGGGAAGGAACTGGAACGATGCGCCATGTGACCGTACTACAGTAATAATATTTCCTTTCCTGTGCGCCAAGAACCTGTGAGGCTTCCCGCCATCATGATCTCACTACAGCTCATCTATAATCTCTATCATTGATTCACTTTCAGTTTGTTCTGCAGACAGAAACAGCTctccgctgacagactcacttTCACTTGTTTATTTTCGGAAGAGTTAGGAAACAGTTCACATTTGAGTTTTAACGTTAGAAGGAAATTGACTCTCTGAGCTGGACAAAAACATAATCAGTTATTGGACTTTTAATCTAGTAAATAACACATAATGAAATACAGAAAAGATTCAAATACTCTGACATCTTTTCCATTTTAGTTTCCTGAATAGTGCCTgtcagctctgtccaaaggtaacaacatCCACCTACCAGACATGAGTGGTGAAGATCTTCTCTTCAAAAATGtccaaatagaaaataaaatccaaATGTTGTCTGAA
>XM_039801109.1
AAGCATCACCAATATCGATCAGTGattcaaacatgttttttaggTATCAAGATTAACTATATAAAGAGAGAATATCTTCTTTTACTGAGTGAGAGTCATCAGCTTGTTGTTCCGTGTCAGCCAATCATCACCTCAGCAAAGATGGCATCAGGCTTTCCGTTTGCTTTGTTGCTCTGTTTGTCCATCGGACTGTTGGCTCCATCTTGTCGTGGACAAACCTCCTGCCCAGGTCCCTGTCCTCCTGGTTGGACTCAGTTCGGCTCTCGctgtttcagtttcaacttCCAAGGAAAGAATTGGATCGATGCAGAGAACTTCTGCAAGGCCGCCGGTGGGAATCTGGCTTCAGTCCACTCAGAAGAGGAACACGTATTCCTCAAAACCTACATTAAGCAAGTGACCGGTGCAAACGGACGGGCCTGGATTGGAGGCTTTGACTCAGTGAAGAAGGGCGTGTGGATGTGGTCTGATGGATCCACAATTGACTACAAAAACTGGGATGTGGGGCAGCCTGACAACTTTGATGGAGAAGAGAACTGTCTTGAGATGAACTATCAGGggggagttcactgagaggcagcctctcttttgcaggaacgccctgatcacattcacacagttccacattcatacctggaagatgcccagtacaaccacagtctgatctgctggccactgagcagctccactggagccatgcacttcttcttcatctgtttTCCTTCACTTTATAATCAATAAgcattaaataataaaagacaTATTGTCACAGTG
>XM_039801110.1
AAGCATCACCAATATCGATCAGTGattcaaacatgttttttaggTATCAAGATTAACTATATAAAGAGAGAATATCTTCTTTTACTGAGTGAGAGTCATCAGCTTGTTGTTCCGTGTCAGCCAATCATCACCTCAGCAAAGATGGCATCAGGCTTTCCGTTTGCTTTGTTGCTCTGTTTGTCCATCGGACTGTTGGCTCCATCTTGTCGTGGACAAACCTCCTGCCCAGGTCCCTGTCCTCCTGGTTGGACTCAGTTCGGCTCTCGctgtttcagtttcaacttCCAAGGAAAGAATTGGATCGATGCAGAGAACTTCTGCAAGGCCGCCGGTGGGAATCTGGCTTCAGTCCACTCAGAAGAGGAACACGTATTCCTCAAAACCTACATTAAGCAAGTGACCGGTGCAAACGGACGGGCCTGGATTGGAGGCTTTGACTCAGTGAAGAAGGGCGTGTGGATGTGGTCTGATGGATCCACAATTGACTACAAAAACTGGGATGTGGGGCAGCCTGACAACTTTGATGGAGAAGAGAACTGTCTTGAGATGAACTATCAGGgaacgccctgatcacattcacacagttccacattcatacctggaagatgcccagtacaaccacagtctgatctgctggccactgagcagctccactggagccatgcacttcttcttcatctgtttTCCTTCACTTTATAATCAATAAgcattaaataataaaagacaTATTGTCACAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62214 True 1336 lncRNA 0.43 7 2211215 2232659
TU62215 False 469 lncRNA 0.39 2 2205341 2232659
XM_039801108.1 False 1046 mRNA 0.43 7 2211176 2232329
XM_039801109.1 False 774 mRNA 0.47 7 2211176 2232622
XM_039801110.1 False 739 mRNA 0.46 7 2211176 2232622

Neighbor

gene id symbol gene type direction distance location
LOC120558473 LOC103372586 coding upstream 596896 1568295 ~ 1608445 (+)
adrm1 NA coding upstream 1152331 1048972 ~ 1053010 (+)
LOC120558589 LOC103356004 coding upstream 1160102 1015388 ~ 1045239 (+)
trim101 NA coding upstream 1194504 984169 ~ 1010837 (+)
LOC120558777 LOC102225534,LOC103148188,LOC103148186,LOC103356007,LOC103385155 coding upstream 1219070 938976 ~ 986271 (+)
LOC120559387 NA coding downstream 180912 2413571 ~ 2420858 (+)
LOC120558519 NA coding downstream 316280 2548939 ~ 2550724 (+)
LOC120558523 NA coding downstream 413233 2645892 ~ 2647467 (+)
LOC120559413 NA coding downstream 428913 2661572 ~ 2662342 (+)
LOC120558526 NA coding downstream 520854 2753513 ~ 2757047 (+)
LOC120559434 NA non-coding upstream 173268 2030045 ~ 2032073 (+)
LOC120559429 NA non-coding upstream 301963 1902564 ~ 1903378 (+)
G46383 NA non-coding upstream 328359 1876712 ~ 1876982 (+)
LOC120559438 NA non-coding upstream 354143 1849055 ~ 1851198 (+)
G46380 NA non-coding upstream 366520 1837732 ~ 1838821 (+)
G46485 NA non-coding downstream 20427 2253086 ~ 2253741 (+)
G46488 NA non-coding downstream 22678 2255337 ~ 2255857 (+)
G46490 NA non-coding downstream 29132 2261791 ~ 2262110 (+)
G46492 NA non-coding downstream 43606 2276265 ~ 2276586 (+)
LOC120559436 NA non-coding downstream 49465 2282124 ~ 2288627 (+)
G46328 NA other upstream 567171 1635948 ~ 1638170 (+)
G46305 NA other upstream 682110 1522685 ~ 1523231 (+)
G46238 NA other upstream 920962 1277288 ~ 1284379 (+)
LOC120559832 rps21 other upstream 957570 1236315 ~ 1247771 (+)
G46066 ppdpf,LOC106937393,LOC103148182,LOC103356003 other upstream 1305045 793902 ~ 900296 (+)
LOC120558501 NA other downstream 104677 2337336 ~ 2339429 (+)
G46530 NA other downstream 157287 2389946 ~ 2390512 (+)
G46574 NA other downstream 513239 2745898 ~ 2770453 (+)
LOC120559392 NA other downstream 913822 3146481 ~ 3288089 (+)
LOC120559414 NA other downstream 1046702 3279361 ~ 3304637 (+)

Expression


Co-expression Network