LOC120559392


Basic Information

Item Value
gene id LOC120559392
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3146481 ~ 3288089 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU62333
TCGAGAAATCAGACAATTGTAAACACCAGATATTTTATAGGGCCTACACATATATTCACTTCTTTCTAAGTAACGTATGTTTAGCACGATTCACTATTAATCGTGTATCAATATGGGAGTTTATTCAATACACATTGGgttcatgttttaattttgtgtaTCATAATTAAGCACAATTTAGGCCCAGCAGTCTCTGAGAGGAgacttttctctctgtgtcggGGAGACAGGAAGTACAGGTTGAAAGCTATCTTTAGTTTAAACAAGGAAGATATGAGGGAGGTAGCATAGGGAAGTTAGCCTAGCAAGGTGTTTCCTGTCAGAGAGCGGAGGAGTTTTCTCGTTGAAGCAAATCTGAGATGGACATATTATGATCTGTATAAAACTATAAACTCACTTGTGCATTGCTATGTTCCAAGGTAATATGATCAGTGACACCAAAATGATTAAGGTCTTTTGACATTTATAATGTCTCCTCTGCCACTAATTAGACCATGGTAAAGctaaaaaagtaaagaaatattATCCTTTGATGTGACCGATGTGGTACACTAGGAAATGCTGAGTACCCTCCAGGATGAAATAAAGTGAAATCATTTGAAGTAAACCATCTGTGAGAACTAGCATGTACGTTAGTAGTTGTTGTCTGGGTCACAGCGACCTAGGTGTACTTAAGAAAAGGAAGATGAGAGGACTGTTAGAAGTAAAAATATCACCAGTTCAGGTCCATCTAAAGATGTAACGAACATAAAGTGGCTGTGGGCGTGAATGTTTCCAACTGACACCACCCTAAACACTGAATAAGAAGAGAGTCATGTGGAACTTAGATTCAGTTGTCTATTCGACTGACTATCGCCGGTGTTCAGTTGATGTGTCTGAGGCAGCTCGGTTTGTTTGTTATAATGTAACAAATAAATCTGCATGGAGTGAATATCAACAGTCTCTGGAGTCATCATGGTGTCCtcacatagaaataaaatggat
>XM_039801086.1
TTGAACAAAATGGCGCCTAGCAGAAAGGTGTGTTAGCCATATGTCAATGGTGTTagcttatatatatgtcaatatGTGTTAGCAGAGTCTCTTTGTTGTGTAGAGAAAGAGCTAAAATGTGTAAAGTCCAGATGCTGAGAGCGTTGGTGGAGcagcgactaactgcggctgctgaagagatatttgggttgtttgaaagaacgatagcagagtacgaggaggaactttgtcgttcaaaagaggagaacgagcGACAACGGGAGCAACTGGACGCTGTTTTCAACCCTCAGCTTCGgttacacagagcagatgttgagcagctgttggtggttaaagaagaggttccccctgagcagcaggagtgtagctccagcgtggaccagcaggagccagagccccccccacccattaaagaggaacaggagaaactgtggagcagtcaggagggagagaagcttcaagggctggaggaggctgatatcaccaagttcccattcactcctgtccctgtgaagagtgaagatgatgaagaggaagctcagtcctcacagcttcatccaagacaaactcaacacatggaaacagaagctgatggagaggactgtggaggaccagaaccagccaggaactcacatccacttttacaaccagagactgaagaccagactggagatccttctgaacctgagactgataacagtgctgattggaaggagaccagagaacctcagtcagctttaaactctctgaaacatgattcaagatgtaagaaaacattcagctgctctgagtgtgggaaaatATGTGGCTTCAAGTCAcatctgaagagacacatgataactcacacaggagaaaaacctttcagctgctctgagtgtcaGAGGAAATTTGGCCGCAAGTCAGATCTGGAAGATCACATGCttactcacacaggagaaaaacctttcatttgcagtgtttgtaataaagcttttacacagagaggaagtttacagaaacacatgagaatccacacaggagaaaaaccttTTAGATGCTCAAtttgtaataaatcttttaaaCAGAGTGGGCATTTACGGACACACATGgtaactcacacaggagagaaggcttttagctgctcagtttgtaataCATCTTTTACATTGAGAGGAtctttacagaaacacatgagaatccacacaggagaaaaaccttttagctgctctgagtgtggtagAGCTTTCACTGATAGTGGAACCCTGAAGAcccacatgagaactcacacaggagaaaaacctttcagctgctcagtttgtaataaatcttttacaCGGAGTGGAGATGTACAGAagcacatgagaactcacacaggagaaaaacctttcagttgctcagtttgtaagaaatcttttacacagagagcAATTGTACGGTCACACATggcagtccacacaggagagaaaagattcagctgcagtgtttgtaacaaaagatttgcctggCGTTCTGTTCTCAAAatacataaatgtgttggtcagATAGAAACAGAAGTTGATGGacaggactgtggaggaccagaaccagccaggaactcacatccacatccacttttacaaccagactgaagaccagactggagactcttctgaacctgagggTGGTGACATGGAATAACGTTTGTGCCTTTTAAGTCCAAGCAAAAcatctcaagtatcaaacaaaaatcttCATGTATCATCATCTAGATAGAAGACATTATATTGTGTGGTAGGAAAAAGTACactctttatttaaatgttgttattagatattgttttgtcttgtaatgTCTGTCATTATAATCGAGAAATCAGACAATTGTAAACACCAGATATTTTATAGGGCCTACACATATATTCACTTCTTTCTAAGTAACGTATGTTTAGCACGATTCACTATTAATCGTGTATCAATATGGGAGTTTATTCAATACACATTGGgttcatgttttaattttgtgtaTCATAATTAAGCACAATTTAGGCCCAGCAGTCTCTGAGAGGAgacttttctctctgtgtcggGGAGACAGGAAGTACAGGTTGAAAGCTATCTTTAGTTTAAACAAGGAAGATATGAGGGAGGTAGCATAGGGAAGTTAGCCTAGCAAGGTGTTTCCTGTCAGAGAGCGGAGGAGTTTTCTCGTTGAAGCAAATCTGAGATGGACATATTATGATCTGTATAAAACTATAAACTCACTTGTGCATTGCTATGTTCCAAGGTAATATGATCAGTGACACCAAAATGATTAAGGTCTTTTGACATTTATAATGTCTCCTCTGCCACTAATTAGACCATGGTAAAGctaaaaaagtaaagaaatattATCCTTTGATGTGACCGATGTGGTACACTAGGAAATGCTGAGTACCCTCCAGGATGAAATAAAGTGAAATCATTTGAAGTAAACCATCTGTGAGAACTAGCATGTACGTTAGTAGTTGTTGTCTGGGTCACAGCGACCTAGGTGTACTTAAGAAAAGGAAGATGAGAGGACTGTTAGAAGTAAAAATATCACCAGTTCAGGTCCATCTAAAGATGTAACGAACATAAAGTGGCTGTGGGCGTGAATGTTTCCAACTGACACCACCCTAAACACTGAATAAGAAGAGAGTCATGTGGAACTTAGATTCAGTTGTCTATTCGACTGACTATCGCCGGTGTTCAGTTGATGTGTCTGAGGCAGCTCGGTTTGTTTGTTATAATGTAACAAATAAATCTGCATGGAGTGAATATCAA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0000152 nuclear ubiquitin ligase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005680 anaphase-promoting complex cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component

KEGG:

id description
ko03022 Basal transcription factors
ko03013 Nucleocytoplasmic transport
ko03420 Nucleotide excision repair

RNA

RNA id representative length rna type GC content exon number start site end site
TU62333 False 984 lncRNA 0.38 2 3165512 3288089
XM_039801086.1 True 2760 mRNA 0.42 4 3146481 3166448

Neighbor

gene id symbol gene type direction distance location
LOC120558536 NA coding upstream 319769 2825257 ~ 2826712 (+)
LOC120558526 NA coding upstream 389434 2753513 ~ 2757047 (+)
LOC120559413 NA coding upstream 484139 2661572 ~ 2662342 (+)
LOC120558523 NA coding upstream 499014 2645892 ~ 2647467 (+)
LOC120558519 NA coding upstream 595757 2548939 ~ 2550724 (+)
LOC120559447 lactbl1,LOC103362248,LOC100707689,LOC101473793,LOC102312186 coding downstream 437872 3725961 ~ 3734391 (+)
LOC120558400 NA coding downstream 670467 3958556 ~ 3982281 (+)
LOC120558402 LOC103357835,LOC104954328 coding downstream 717176 4005265 ~ 4014601 (+)
mfn2 mfn2 coding downstream 742434 4030523 ~ 4059713 (+)
LOC120559787 LOC103357833 coding downstream 796605 4084694 ~ 4180336 (+)
LOC120559441 NA non-coding upstream 110546 3018811 ~ 3035935 (+)
LOC120559422 NA non-coding upstream 168787 2976616 ~ 2977694 (+)
LOC120559417 NA non-coding upstream 170911 2974854 ~ 2975570 (+)
LOC120559432 NA non-coding upstream 266739 2879162 ~ 2879742 (+)
G46577 NA non-coding upstream 284659 2663906 ~ 2861822 (+)
LOC120559445 NA non-coding downstream 372501 3660590 ~ 3661927 (+)
LOC120559446 NA non-coding downstream 418516 3706605 ~ 3719155 (+)
G46996 NA non-coding downstream 579062 3867151 ~ 3870238 (+)
G46997 NA non-coding downstream 582286 3870375 ~ 3872139 (+)
G47006 NA non-coding downstream 590703 3878792 ~ 3881000 (+)
G46574 NA other upstream 376028 2745898 ~ 2770453 (+)
G46530 NA other upstream 755969 2389946 ~ 2390512 (+)
LOC120558501 NA other upstream 807052 2337336 ~ 2339429 (+)
LOC120559409 NA other upstream 913822 2205341 ~ 2232659 (+)
G46328 NA other upstream 1508311 1635948 ~ 1638170 (+)
LOC120559404 NA other downstream 160015 3448104 ~ 3514758 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other downstream 554975 3843064 ~ 3865798 (+)
LOC120559501 NA other downstream 1484843 4772932 ~ 4775358 (+)
G47444 NA other downstream 2910957 6199046 ~ 6200594 (+)
ccm2l ccm2l,LOC102778549 other downstream 3409904 6697993 ~ 6720932 (+)

Expression


Co-expression Network