LOC120559425


Basic Information

Item Value
gene id LOC120559425
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 2637964 ~ 2645754 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU62363
CCGGAACTAACGTTAACTGTTTGTGTGTCACATCGTGGTGAGGACGGCGGAGTAAAACGCGCCAGTGTTTAGTTTcttaagaagaaagaaaggtcCCAAACTGCAGGATGtggttttaaaagctgaaacaaagctacacagagcagATCGCAGAGCCGCGAGGAACTTTAACATGAAGTCTGAGAGGAAGCTGTCAGCGGACCAGGGGACAGgctcgttcgagatgaactgcgcctcgcctgtaaagtagacgagagcaggcggcagcagcggggggcggtgacaaaagtccgctctcaagtcggacagttttccagctgactccagcagccttcaggctgaacaggaagtgacagaaacacggtggtccgattccgatttaataaaatgttatcagacccctatatcagctcctacacagtctccagttgtttttattatgacaaagtagctgtcaaaattctctacatgtgatctgttgctgattttaataaacaacagactgtagatgatccgtaatctgaacagatttagacttttaaacacaactatcagccacacaacatgtgttctgtacagaataagcttttaaatcagacaaatcgcagttaaaatccctccgattgaaaatcaataaaaagtttatataaaacgtcatcatgttgagttgattctgaaccaatcagctgtttgatcagctgagaggccggcgtttcccagcatgccctgggtccacctgcgtccgcctggctcttgcagttggtgaaaagcaactgcgctacctgcgtctcagaactgcggccgccttggtctcgtgagattatcgttgcccacgtgtgcatgacgtcagagcaagtcgggatcaagtcggacacaaatctaaccggcatgcattgggcgccgatcgccggtgatcgattctgcgcagatctggctcatctcgaacgagcctagtgacacatgtaggctacgtttttgtgtggaaagcttttattaaggaactgtaggaaggcattcgggaatgtcaacagatgagcgcatcagcgcacacggggcaacaagcgcacgttaataagctgttaaaatgttcaatgtgttaacctttcctgcttgctttgtttccgaccgtgatcagaaaaccagggagactcgttacctccagggccgacgttataaaatgaataacgtcggggttaaaatcctgtttctggtgagcaaatgactgaacttggctttcagtctggggtttatttcggacaccgcacacactgtgtacaaaacttaaacttattccaccaactctgctctggttgcatctacaacacgtctgcttcccctctctctcttctgatCACTTTCCACATGCGCTGAactctcttaaaggagccgcagcaccattttacaacaaatgccttatcgcgctgatgtgaccgagcccgacccgaacccgaccataatttctaaacaTCTGTCCGAACCTGGCCCGTCCCCGTCTAGTCCCGTCGgactcgggtcgggtatccatgccttagtaTACACGGATATATAAGCTACGTGTGTATACATGGATATAGAAGCTATAATCTTTGGGCAACatatagggctgtgcaattaattgaatttcgattttcaatttcgattttggctcccaacgatcaccaaaatagtataattgagaaaaaactattattttgccatgttctgttttgcaagaacactcttattttgtcttgtgttctgaatgacacgcaCACATCCTCACGCGCACAGCTGCCCCtcccgaagccagtcagggaggcaagttgtgtgcatatcatccgctggaattcaaaaactcagcgcgagtaaagatggcagcagcgtttggtgagcaaaaaaaggcaaaaccaactcagttgtctgggaacagctaacattagctaaccgtgcggtccctctgcctttgcccc
>TU62365
CCGGAACTAACGTTAACTGTTTGTGTGTCACATCGTGGTGAGGACGGCGGAGTAAAACGCGCCAGTGTTTAGTTTcttaagaagaaagaaaggtcCCAAACTGCAGGATGtggttttaaaagctgaaacaaagctacacagagcagATCGCAGAGCCGCGAGGAACTTTAACATGAAGTCTGAGAGGAAGCTGTCAGCGGACCAGGGGACAGgctcgttcgagatgaactgcgcctcgcctgtaaagtagacgagagcaggcggcagcagcggggggcggtgacaaaagtccgctctcaagtcggacagttttccagctgactccagcagccttcaggctgaacaggaagtgacagaaaca
>XR_005639264.1
gatgtattaagagaacgggttGAATAAGGTGAGACGTGCAGTGCCGTCTTGTTTCCGGCATTGGACGCccgtgtttctttattttatagtcAAACGGTTTGACTATAAAATAACTGTCTGTCTAGACAATATAAGAAACCCGCAGTTACATTAGTAAACAAACATTTGCCCGGAAGTTGTTGGTACGACCCGTAATACCGTCCGTCCCCGGAACTAACGTTAACTGTTTGTGTGTCACATCGTGGTGAGGACGGCGGAGTAAAACGCGCCAGTGTTTAGTTTcttaagaagaaagaaaggtcCCAAACTGCAGGATGtggttttaaaagctgaaacaaagctacacagagcagATCGCAGAGCCGCGAGGAACTTTAACATGAAGTCTGAGAGGAAGCTGTCAGCGGACCAGGGGACAGTAGGCTAGAACCGGGCCTGGTGTTGAATCTACTCCGAAGTAGCAATGCAGGACGTGTGAATGCAGCCTAAAGCAGTTTTCAACAGCTTTATCTCAAGATGTTCTGGAAGTGATTGTTGgtgaagaggagcagcaggagtgtagcgccagtgtggaccagcaggagccagagccccccccacacattaaagaggaacaggaggaactatggagca
>XR_005639265.1
taagagaacgggttGAATAAGGTGAGACGTGCAGTGCCGTCTTGTTTCCGGCATTGGACGCccgtgtttctttattttatagtcAAACGGTTTGACTATAAAATAACTGTCTGTCTAGACAATATAAGAAACCCGCAGTTACATTAGTAAACAAACATTTGCCCGGAAGTTGTTGGTACGACCCGTAATACCGTCCGTCCCCGGAACTAACGTTAACTGTTTGTGTGTCACATCGTGGTGAGGACGGCGGAGTAAAACGCGCCAGTGTTTAGTTTcttaagaagaaagaaaggtcCCAAACTGCAGGATGtggttttaaaagctgaaacaaagctacacagagcagATCGCAGAGCCGCGAGGAACTTTAACATGAAGTCTGAGAGGAAGCTGTCAGCGGACCAGGGGACAGCTTTATCTCAAGATGTTCTGGAAGTGATTGTTGgtgaagaggagcagcaggagtgtagcgccagtgtggaccagcaggagccagagccccccccacacattaaagaggaacaggaggaactatggagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62363 True 1949 lncRNA 0.47 3 2638171 2640534
TU62365 False 361 lncRNA 0.52 3 2638171 2638946
XR_005639264.1 False 633 lncRNA 0.48 4 2637964 2645754
XR_005639265.1 False 541 lncRNA 0.48 3 2637971 2645754

Neighbor

gene id symbol gene type direction distance location
LOC120558519 NA coding upstream 87240 2548939 ~ 2550724 (+)
LOC120559387 NA coding upstream 217106 2413571 ~ 2420858 (+)
LOC120558473 LOC103372586 coding upstream 1029519 1568295 ~ 1608445 (+)
adrm1 NA coding upstream 1584954 1048972 ~ 1053010 (+)
LOC120558589 LOC103356004 coding upstream 1592725 1015388 ~ 1045239 (+)
LOC120558523 NA coding downstream 138 2645892 ~ 2647467 (+)
LOC120559413 NA coding downstream 15818 2661572 ~ 2662342 (+)
LOC120558526 NA coding downstream 107759 2753513 ~ 2757047 (+)
LOC120558536 NA coding downstream 179503 2825257 ~ 2826712 (+)
LOC120559389 NA coding downstream 532543 3178297 ~ 3185180 (+)
G46564 NA non-coding upstream 33709 2603198 ~ 2604255 (+)
G46558 NA non-coding upstream 71649 2565724 ~ 2566315 (+)
G46523 NA non-coding upstream 290407 2344461 ~ 2347557 (+)
G46511 NA non-coding upstream 315935 2321337 ~ 2322029 (+)
G46501 NA non-coding upstream 335746 2301946 ~ 2302218 (+)
G46577 NA non-coding downstream 18152 2663906 ~ 2861822 (+)
LOC120559439 NA non-coding downstream 209803 2855557 ~ 2856180 (+)
LOC120559432 NA non-coding downstream 233408 2879162 ~ 2879742 (+)
LOC120559417 NA non-coding downstream 329100 2974854 ~ 2975570 (+)
LOC120559422 NA non-coding downstream 330862 2976616 ~ 2977694 (+)
G46530 NA other upstream 247452 2389946 ~ 2390512 (+)
LOC120558501 NA other upstream 298535 2337336 ~ 2339429 (+)
LOC120559409 NA other upstream 405305 2205341 ~ 2232659 (+)
G46328 NA other upstream 999794 1635948 ~ 1638170 (+)
G46305 NA other upstream 1114733 1522685 ~ 1523231 (+)
G46574 NA other downstream 100144 2745898 ~ 2770453 (+)
LOC120559392 NA other downstream 500727 3146481 ~ 3288089 (+)
LOC120559414 NA other downstream 633607 3279361 ~ 3304637 (+)
LOC120559404 NA other downstream 802350 3448104 ~ 3514758 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other downstream 1197310 3843064 ~ 3865798 (+)

Expression


Co-expression Network