G47006


Basic Information

Item Value
gene id G47006
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3878792 ~ 3881000 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU62883
CTAGCTCCACAGCCAACACATTTGGAACAGGGTCAAACTATGACAATGAAAACATAAAAGCAGCAGTTAACTTTAAAgctatttatttacattgtttttgttctcTACCTGTAAGAAAGTCACTGGAATACTAAGaactaaaatgtttaaatatacacacactgtaaaagaATCACCTATTTGACCACAAAATATTGTACAGAGTCAGAAGAGTGACAGAAAGGAAAGTTAATAGAAAAAGTCATTCTCTCTCCCCTTGTCACTTAAAAATCAGTTCACCCtaatcaggaaaaaaaaaaaaaattctcttacTTATCCCTGGTGGTGTTTggccatgcagatagttttaCCTACTGACTTCGAAGACACAGTCTCTCATATAAAAGGGACAATTTTCATGGGGGACAATTgaggatatactgtatgtatgctgATGACAGGCTCAAATTGTGCCTACAATTTGCAGTACAGGAACCAAAGCTTGTTCAATTTGTATgagcaaaagacaaaaactgGCACTGTGGCTACAGTTGCTTTTCAGTTCCAGTAGTCATAAGTAAAATGTGGCGACTGCCCAGAGCCTTTCGTGACAACTGTATGGCCATTaaataattaagaaaaaaagaatacaaagaAGTCCTTTACTGCCAAGTTTCAAGACAATCATCGACACCTGGTGCTACAGCAATGTCTGCGGGGGGAAGTGGACCAATACAACTATACAAGTTTAAAATTATATTCCGGTTTATTACAACTTCAATCAAAATTTTCGTACTTTTGTCCATTTTCTACCAGTTTGCACTCACCAAGTTAATAGGGGAGGCCAGCAGTCAAACAGGTTGGAAACAAAGCAACGACCGCTTTCTTTAAAGCTCAAACTGGACAGGAGAATCTAGTAACATTGCTAATAATTCTTAGAccgggtaaacccagcccgatctggcAGCCATTTGAttttgccctgcagctcaggctggaaacctgtacgtttatccaTCCTGCTTCCATAAAAAATTTTGCGGGCACCAAttacaaactggcttatccacctggcgcgctattggcggctgattggttgaaggactatccaattgcgtacagagtcatttgaactgtgCCCGTAGATCACGcactcttgtgcagtagaaaatacagagcagactcccccagactaatgttcagtcttaaaagattgagcttggtctggtgatagccagactaaatAATTCCTCATTCTACAGTAAACTACAGTAAGCACAGTAGGTCTGTAAGCTGTGATAGTTTAAAAACAGTTTGAGTCATAACTTCACTGTTcgccttctttttcttcttccaaatAAGTCTGAATTAACATACTCCTAACTCTaacctactactactactactactactactactactacttcttctttttttttttgttttgttttcctccccCCCGCCTCTTTTTTGATTTGGGGGTTaaacaaaacaagctaaaataaaCCGGAATTATCATTGAACAGTGATGAACAGGCTCGGGCAGTTGTCCATTTAATGTCCTTGTAGAATACATTTATACAGCACAGAGAAAGCGAGCACAGAATATGATTTACTCAAAAAGTAAATATCCGTCATTCGGTGTACTGCCATCTAGGGATGGGCTAATAGACGTGCTTATCTTAATTATAGAAAGATATTTAAAATCACTGGAATCAAGTACTCAAATAATCCACTGAAGCAGGGTTCAATTCAGTGGAAACAGAGCAGCTCTGTTCAAGGAAATCACAGATGTGAAATTCTAGTTTTCATCTTGGTAAGAGTTTGTCATATGTTCACATATAAAATGTTGAGGGTGTATTTcagttttcataaaaaaaaaaaaaattattcatatACAAATCTGTACAAGGTTCCTCATCTTGCCACTGCGGTCAGTGTTGCGTTCTCAGCAGTCCTTTGTCAGAACAGGTATTTTCGACATGAGTCCGATCCACACCGGCACTCCACTCGAATCCGCTTCTTCGGAGAGCTGGGGAGCCCCGCGAGACTGAAACTGGAGTCCATTTTGGTGCTTTCTGTATCGACCGGGTCAActggaaaacaaaacaggagTTGAGTTGGAGAGCGCTCGGTTGATATGTGGCAACGTTGGTCTCAAAAGACAACTAAAACTGCG

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU62883 True 2158 lncRNA 0.40 2 3878792 3881000

Neighbor

gene id symbol gene type direction distance location
LOC120559447 lactbl1,LOC103362248,LOC100707689,LOC101473793,LOC102312186 coding upstream 144401 3725961 ~ 3734391 (+)
LOC120559389 NA coding upstream 693612 3178297 ~ 3185180 (+)
LOC120558536 NA coding upstream 1052080 2825257 ~ 2826712 (+)
LOC120558526 NA coding upstream 1121745 2753513 ~ 2757047 (+)
LOC120559413 NA coding upstream 1216450 2661572 ~ 2662342 (+)
LOC120558400 NA coding downstream 77556 3958556 ~ 3982281 (+)
LOC120558402 LOC103357835,LOC104954328 coding downstream 124265 4005265 ~ 4014601 (+)
mfn2 mfn2 coding downstream 149523 4030523 ~ 4059713 (+)
LOC120559787 LOC103357833 coding downstream 203694 4084694 ~ 4180336 (+)
LOC120558381 LOC100699862,LOC103374679,LOC104941073 coding downstream 373640 4254640 ~ 4258571 (+)
G46997 NA non-coding upstream 6653 3870375 ~ 3872139 (+)
G46996 NA non-coding upstream 8554 3867151 ~ 3870238 (+)
LOC120559446 NA non-coding upstream 159637 3706605 ~ 3719155 (+)
LOC120559445 NA non-coding upstream 216865 3660590 ~ 3661927 (+)
G46555 LOC104948352 non-coding upstream 625261 3041473 ~ 3253531 (+)
LOC120559454 NA non-coding downstream 39578 3920578 ~ 3925865 (+)
G47045 NA non-coding downstream 53329 3934329 ~ 3935590 (+)
G47062 NA non-coding downstream 134192 4015192 ~ 4019079 (+)
G47076 NA non-coding downstream 174674 4055674 ~ 4055963 (+)
G47113 NA non-coding downstream 193028 4074028 ~ 4074900 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 12994 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 364034 3448104 ~ 3514758 (+)
LOC120559414 NA other upstream 574155 3279361 ~ 3304637 (+)
LOC120559392 NA other upstream 590703 3146481 ~ 3288089 (+)
G46574 NA other upstream 1108339 2745898 ~ 2770453 (+)
LOC120559501 NA other downstream 891932 4772932 ~ 4775358 (+)
G47444 NA other downstream 2318046 6199046 ~ 6200594 (+)
ccm2l ccm2l,LOC102778549 other downstream 2816993 6697993 ~ 6720932 (+)
G47903 LOC104965021 other downstream 4231441 8112441 ~ 8116228 (+)
pkig pkig other downstream 4461750 8342750 ~ 8380578 (+)

Expression


Co-expression Network