LOC120559518


Basic Information

Item Value
gene id LOC120559518
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 4762389 ~ 4766774 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU63195
caacaatatggtgttttttgaaaattaaaccatgtaaacctattctggtacaaccttaaaatacagttatgaacctgaaaatgagcataatatgggcgctttaacggTTCCTCAGTTGTTCGCGGGTCATTTGGAAGCATCGTTTATTGAGCGTCTGGATGtctttactgtacacacacactgttgatgTGATGGACAGTGAATCTGAATTCTGCCCAACAACATATTCGCGCCACAGTCGATaaaggaaggggaaaaaaagttgcCAGTCTACGAAGGGTTAGGATGGAGACTGCTTCTTTGCTGCTGTCAAATACCATGTGGAAGATCAGAAAACGTCGGCAGGAGGTGGGAGAGAAGGCAATGCAGAGATGAAGGACATCATACCACAATAATAGTTGTGTGTATAAGCCTGATCAACAAGTGAAAAGAGTCAGATAAGAGGAAAGAGTTTGAAAACTGATTTGACGACCACTGCTGAATTGGCCTGCTAAGAGGAAGAGGCACTAATGATTCCAAAAGAGGAAGCCAAAGAAGA
>XR_005639305.1
GCCAATACATCGTGGCGACTGGAAGATCAGAAAACGTCGGCAGGAGGTGGGAGAGAAGGCAATGCAGAGATGAAGGACATCATACCACAATAATAGTTGTGTGTATAAGCCTGATCAACAAGTGAAAAGAGTCAGATAAGAGGAAAGAGTTTGAAAACTGATTTGACGACCACTGCTGAATTGGCCTGCTAAGAGGAAGAGGCACTAATGATTCCAAAAGAGGAAGCCAAAGAAGACCTACACAGACTTTGAAATGGaTCTCTCAATTGCCATGATGACCAAGATATTCAACGGGAAAATGTGGAAAGCTGCCATATTCCCAGTCATTACTTTGCCAAATCTTCTGTGCAGCACCACGGAGGACCCTACTTTCCTGAGTACGAAGCCGGCCATCAAGGAGTTCCCCGACTGGCAACAGACTGGAGCAAAGGCTGTAGCAGGGacagcattttcttttgctactgaaataatttacattatgatagAAAGTGGACAATATAGTGtgacaattagttttttttctccaacatgtacacactgctgttgtgaAGCAGTGATATACAGCTCACGAGTGTGTAGTCAAAAgagagaaatactgtatatttcagcGACTCCTACAGattaagaaaaataatgaattttgttaataaataaatgttattcttGGCTCAATTGTTAAGTGTTTGGGTTCAAATAACATTACCATGATCCCATAGGCATCCAAAAATTGAGAAAGTGAcgttttttaaaactgaaacaaGGTGTTTGACATCCTGTTGTGTGTGCAAGCCCTTTTTATTGCCACGGGTTTACAGACAGTCTCTAATAATTGGGTATCACCTGGAACACAGCCAATAAtcgagagacacacccaccaaacgagagaaaacataactcAAGCCGTTGCACCCCGTTCCCAGGAAACGTGCGTGCCCCAGCTCTTTGCCTGAGGGGAAGCCCACAGTctcagactta
>XR_005639306.1
GTCATTTGGAAGCATCGTTTATTGAGCGTCTGGATGtctttactgtacacacacactgttgatgTGATGGACAGTGAATCTGAATTCTGCCCAACAACATATTCGCGCCACAGTCGATaaaggaaggggaaaaaaagttgcCAGTCTACGAAGGGTTAGGATGGAGACTGCTTCTTTGCTGCTGTCAAATACCATGTGGAAGATCAGAAAACGTCGGCAGGAGGTGGGAGAGAAGGCAATGCAGAGATGAAGGACATCATACCACAATAATAGTTGTGTGTATAAGCCTGATCAACAAGTGAAAAGAGTCAGATAAGAGGAAAGAGTTTGAAAACTGATTTGACGACCACTGCTGAATTGGCCTGCTAAGAGGAAGAGGCACTAATGATTCCAAAAGAGGAAGCCAAAGAAGACCTACACAGACTTTGAAATGGaTCTCTCAATTGCCATGATGACCAAGATATTCAACGGGAAAATGTGGAAAGCTGCCATATTCCCAGTCATTACTTTGCCAAATCTTCTGTGCAGCACCACGGAGGACCCTACTTTCCTGAGTACGAAGCCGGCCATCAAGGAGTTCCCCGACTGGCAACAGACTGGAGCAAAGGCTGTAGCAGGGacagcattttcttttgctactgaaataatttacattatgatagAAAGTGGACAATATAGTGtgacaattagttttttttctccaacatgtacacactgctgttgtgaAGCAGTGATATACAGCTCACGAGTGTGTAGTCAAAAgagagaaatactgtatatttcagcGACTCCTACAGattaagaaaaataatgaattttgttaataaataaatgttattcttGGCTCAATTGTTAAGTGTTTGGGTTCAAATAACATTACCATGATCCCATAGGCATCCAAAAATTGAGAAAGTGAcgttttttaaaactgaaacaaGGTGTTTGACATCCTGTTGTGTGTGCAAGCCCTTTTTATTGCCACGGGTTTACAGACAGTCTCTAATAATTGGGTATCACCTGGAACACAGCCAATAAtcgagagacacacccaccaaacgagagaaaacataactcAAGCCGTTGCACCCCGTTCCCAGGAAACGTGCGTGCCCCAGCTCTTTGCCTGAGGGGAAGCCCACAGTctcagactta

Function

GO:

id name namespace
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63195 False 538 lncRNA 0.42 3 4762389 4764807
XR_005639305.1 False 975 lncRNA 0.42 5 4764088 4766774
XR_005639306.1 True 1152 lncRNA 0.42 5 4762514 4766774

Neighbor

gene id symbol gene type direction distance location
LOC120558632 LOC101473708,LOC108431628,LOC107592856 coding upstream 175325 4431388 ~ 4587064 (+)
LOC120559099 NA coding upstream 480863 4266875 ~ 4281526 (+)
LOC120558381 LOC100699862,LOC103374679,LOC104941073 coding upstream 503818 4254640 ~ 4258571 (+)
LOC120559787 LOC103357833 coding upstream 582053 4084694 ~ 4180336 (+)
mfn2 mfn2 coding upstream 702676 4030523 ~ 4059713 (+)
LOC120558307 NA coding downstream 609529 5376303 ~ 5387260 (+)
npbwr2b LOC103358254,LOC104941021 coding downstream 980435 5747209 ~ 5750232 (+)
oprl1 oprl1 coding downstream 1297076 6063850 ~ 6234843 (+)
LOC120559680 fam187b,LOC104965325,LOC102795245 coding downstream 1495249 6262023 ~ 6272680 (+)
rgs19 LOC103373111 coding downstream 1579334 6346108 ~ 6393502 (+)
LOC120558318 NA non-coding upstream 95518 4659466 ~ 4666871 (+)
LOC120558383 NA non-coding upstream 497757 4258819 ~ 4264632 (+)
G47113 NA non-coding upstream 687489 4074028 ~ 4074900 (+)
G47076 NA non-coding upstream 706426 4055674 ~ 4055963 (+)
G47062 NA non-coding upstream 743310 4015192 ~ 4019079 (+)
LOC120559496 NA non-coding downstream 2506 4769280 ~ 4772306 (+)
G47276 NA non-coding downstream 11343 4778117 ~ 4778555 (+)
LOC120559638 NA non-coding downstream 91494 4858268 ~ 4858785 (+)
G47307 NA non-coding downstream 137375 4904149 ~ 4920830 (+)
G47308 NA non-coding downstream 137722 4904496 ~ 4914494 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 896591 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 1247631 3448104 ~ 3514758 (+)
LOC120559414 NA other upstream 1457752 3279361 ~ 3304637 (+)
LOC120559392 NA other upstream 1474300 3146481 ~ 3288089 (+)
G46574 NA other upstream 1991936 2745898 ~ 2770453 (+)
LOC120559501 NA other downstream 6158 4772932 ~ 4775358 (+)
G47444 NA other downstream 1432272 6199046 ~ 6200594 (+)
ccm2l ccm2l,LOC102778549 other downstream 1931219 6697993 ~ 6720932 (+)
G47903 LOC104965021 other downstream 3345667 8112441 ~ 8116228 (+)
pkig pkig other downstream 3575976 8342750 ~ 8380578 (+)

Expression


Co-expression Network