G47388


Basic Information

Item Value
gene id G47388
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 5533001 ~ 5534512 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU63335
tcctgctctcagctttgaaccttctcctcgcactcagccTGATTCTGCGCGCTTGCAAATCTGCTGCTCTCGGAtctctcctgcgcgcttggatttttctgtgttacAACACTATCAAAATTccacaaccaatagaatgccaggtgtagtgttgaccaattaAATGATCCCtgccccgttgagggtgcgttcgtTTTATGTGAGAACATCCGTTGCGGCCGGCTCCTCTGTAACCATGGGTCTGTAACCCAAGTTTATTTAACCCCGCCGTCCATCGCTTTATTATTAGTATATGTCaataatgtgcacagaatggtcgacggtctttcacctgcacccatcaggaaacgggagaaagctttgaagtgggacataTCAAGTtacgtagctagctacacaactatgagggtggggctgaagTACCCATGTTGAGCTGCACTGTGTGCATGGACCAGTGTTGTACAAACACACTATTGTGTTGTTCCAGTCAGTACATTACTCCAAACGCAAAATCCCATTGGTTCCCCCtgtactcacctgtgtgcagagggcaGGCAGTAGTGGCACAAACCAAGGTGCACAACAAGGCCCAGGAGAGACAATTACTGTGATGTCCACAAATCCAGAGAAGagaagGAGCACACTATACAAAGTCAACAGTGGAGAGTTGATGGATccgtctgtcctcaaagtgccagagatctacaaggacttcacccgtTTCTGCACCATCACCTCCATAATccaagtgataaaagagagaacaaactaTTGTGTTCTCTGCttacatgaataggtgcctgtaatgtctgcccacataaacaatcaataaatg

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU63335 True 835 lncRNA 0.47 4 5533001 5534512

Neighbor

gene id symbol gene type direction distance location
LOC120558307 NA coding upstream 145741 5376303 ~ 5387260 (+)
LOC120558632 LOC101473708,LOC108431628,LOC107592856 coding upstream 945937 4431388 ~ 4587064 (+)
LOC120559099 NA coding upstream 1251475 4266875 ~ 4281526 (+)
LOC120558381 LOC100699862,LOC103374679,LOC104941073 coding upstream 1274430 4254640 ~ 4258571 (+)
LOC120559787 LOC103357833 coding upstream 1352665 4084694 ~ 4180336 (+)
npbwr2b LOC103358254,LOC104941021 coding downstream 212697 5747209 ~ 5750232 (+)
oprl1 oprl1 coding downstream 529338 6063850 ~ 6234843 (+)
LOC120559680 fam187b,LOC104965325,LOC102795245 coding downstream 727511 6262023 ~ 6272680 (+)
rgs19 LOC103373111 coding downstream 811596 6346108 ~ 6393502 (+)
sox18 LOC104941087,LOC103385144,LOC107094976,LOC100711530,LOC101485236 coding downstream 959057 6493569 ~ 6502180 (+)
G47385 NA non-coding upstream 9026 5523070 ~ 5523975 (+)
G47369 NA non-coding upstream 176890 5355635 ~ 5356111 (+)
G47314 NA non-coding upstream 546222 4986281 ~ 4986779 (+)
G47310 NA non-coding upstream 563702 4968929 ~ 4969299 (+)
G47307 NA non-coding upstream 612171 4904149 ~ 4920830 (+)
G47393 NA non-coding downstream 63800 5598312 ~ 5598572 (+)
G47414 NA non-coding downstream 200992 5735504 ~ 5735733 (+)
G47421 NA non-coding downstream 217206 5751718 ~ 5752149 (+)
G47423 NA non-coding downstream 227357 5761869 ~ 5762081 (+)
G47428 NA non-coding downstream 322053 5856565 ~ 5856998 (+)
LOC120559501 NA other upstream 757643 4772932 ~ 4775358 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 1667203 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 2018243 3448104 ~ 3514758 (+)
LOC120559414 NA other upstream 2228364 3279361 ~ 3304637 (+)
LOC120559392 NA other upstream 2244912 3146481 ~ 3288089 (+)
G47444 NA other downstream 664534 6199046 ~ 6200594 (+)
ccm2l ccm2l,LOC102778549 other downstream 1163481 6697993 ~ 6720932 (+)
G47903 LOC104965021 other downstream 2577929 8112441 ~ 8116228 (+)
pkig pkig other downstream 2808238 8342750 ~ 8380578 (+)
LOC120559763 NA other downstream 2943611 8478123 ~ 8497394 (+)

Expression


Co-expression Network