ccm2l (ccm2l,LOC102778549)


Basic Information

Item Value
gene id ccm2l
gene name ccm2l,LOC102778549
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 6697993 ~ 6720932 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU63466
GAACAAGAATGGAGCAGCCTGGACAGAAGCTGAAATAACTCCAACCGAGAGAGACGGCGACAAAGAAGGAACGATGGGAAAAAACAACTGTaagacagacaaaaagacaaaaaaagacaaactgaaacaaaaCTAAAATCCCATTCAGCAACGAGTGGCCAGGACAAGGACCCATCTGACCCAGAACAGGACAATTACAGAGGGAGACTTACCCACGATGGACTATGAACCCAAGAAGTCCAGGAAGAGTTTTGTCTCTCCTATCAAGCGGCTGGTGTGGTCAAAATCGACTCGCCGGCCGGTGGATCGAGGCAGCGTTTACCGGCGCCCGCTGCACACCGTCCCTCTCTACCCCCCCGACTACCTCATCCACCCGGAGAGACTCATCTTCGACTACGTAGAGAAGGAGGTCAAGTTCCTCGGTCACCTGACCTGGGTGTCGGTTTCCCTGAACCCCTCCAGCCGAGacgagctgctgcagctgctggacACAGCCAGGCAGTTGAAGGTGCTGCCGTTGAAGACCAGCGTGGACCAGGACTGCATTCTGAGTCTGTCCGCTCGCTGTCTGCTGCTGACGTGGAGAGACAACGAGAAGCTGCTGGTGAGGATTCCCACACACGAGATCGCTGCTGCCTCCTACCTGAGAGACGACGCGCTGCACCTGCTGGTCCTCAAGACAGGTCTGAATGTGGATACAGTGGTTGCCGGGGACGACAGCCTGGACCGGAAGAAGCCAACGGGCATAGACGGCCGACGTCAAACCATGAGCTGCAATGCCGACCCCCGGCCCGCAGGGGGCACCATGGAGCGGCGGCACACCATCTGCGGAGTCGACTGGAGGCCCTCGCTGTCCCGCAGCAGCCACGACAAAAACCAGAATGtggagaggag
>XM_039801845.1
TCAGTGTGGAAACAAAAGGAACAAGAATGGAGCAGCCTGGACAGAAGCTGAAATAACTCCAACCGAGAGAGACGGCGACAAAGAAGGAACGATGGGAAAAAACAACTGTaagacagacaaaaagacaaaaaaagacaaactgaaacaaaaCTAAAATCCCATTCAGCAACGAGTGGCCAGGACAAGGACCCATCTGACCCAGAACAGGACAATTACAGAGGGAGACTTACCCACGATGGACTATGAACCCAAGAAGTCCAGGAAGAGTTTTGTCTCTCCTATCAAGCGGCTGGTGTGGTCAAAATCGACTCGCCGGCCGGTGGATCGAGGCAGCGTTTACCGGCGCCCGCTGCACACCGTCCCTCTCTACCCCCCCGACTACCTCATCCACCCGGAGAGACTCATCTTCGACTACGTAGAGAAGGAGGTCAAGTTCCTCGGTCACCTGACCTGGGTGTCGGTTTCCCTGAACCCCTCCAGCCGAGacgagctgctgcagctgctggacACAGCCAGGCAGTTGAAGGTGCTGCCGTTGAAGACCAGCGTGGACCAGGACTGCATTCTGAGTCTGTCCGCTCGCTGTCTGCTGCTGACGTGGAGAGACAACGAGAAGCTGCTGGTGAGGATTCCCACACACGAGATCGCTGCTGCCTCCTACCTGAGAGACGACGCGCTGCACCTGCTGGTCCTCAAGACAGGTCTGAATGTGGATACAGTGGTTGCCGGGGACGACAGCCTGGACCGGAAGAAGCCAACGGGCATAGACGGCCGACGTCAAACCATGAGCTGCAATGCCGACCCCCGGCCCGCAGGGGGCACCATGGAGCGGCGGCACACCATCTGCGGAGTCGACTGGAGGCCCTCGCTGTCCCGCAGCAGCCACGACAAAAACCAGAATGtggagaggagggaaggaggaggaggaggagagagaggcgggggggagagaggaggaggaggcagttTAGAGAGGAAGAGGGTGGGAGGGAGCTGGGAGAGGAGGCAGCAAACGCGCAAAACAGGAGGGAGCTGGGAAAACCGCAGAGCGAGACCCATGAGCGGGAGCTGGGGGGTAGGGGTGGGAGGGGGTGGCGGTGGAGGGAGCTGGGAGAGGAGGCACGGGggaggtgggagggggagctgggagaggaggggaggaggtggTGGCGGCGGCGGTGGGAGCTGGGAGCGGCGGCAAGCCTGCACAGGAAGCTGGGAACGGGGGAAGAGCTACGGCAGCTGGGAGAGGAGGAACCACAACCCGCTGGAGCCCACGCCCTGCCCCGACGCCTACTGCAACCTGGTCATCCTGGCCGTGGAGAACAGGgatGCCGCAGAGGAGTACTGTTCCCTGATCTGTCAGATGTTCCAGATCATTTACGGCCATCAGACCATCGAGTGTGTGGACAGAGCGGGGTTTCATCACTCCATGCCGGACCGCTATTGGCTGCAGAGGAGTGACAGCTGTCTGACTGACATGTCCTATGGCTATGATCCAGAgtttagctgctgcagctcctatgatgGCTCCCAGGATGCCTTTGAGCTCTACTACAGTGAGACGTACAGTGAGAGCTCGTCTCTCTCGCTGCAGGACTCCCATCGCAGTCTGGCTTCAGCCAGTGACGGAGGAGACAGTAACCCCGCCCTGCTGCTGATGCAGGAGTACATGATCacgCTGCGTAACAAGCTGATTCCGGTGGAGTTGCAGCACTTTGCCGTGTTGCTGAGAGAATACAGACTGGGATCAAACATCGACCACTTCTGCTCCGAGCTGCTGCAACTGTATGGTGACAACCGCAAGTTCCTGCTGAtggGCATGCGTCCGTTCATCCCAGACAAGGACGTCGGGGTGTTTGAGAGTTTCCTGGAGAGCATCGGGATCCGGGAGGGAGGCATTTTAACCGACAGCTTTGGACGCATCAAACGCAGCATGAGCAGCACGTCGGCTACGGCCATGAGGGGgTACGATAACGGCTCTCTGGCCTCAGGATCGCAGGAATTCAACCGACGCATGACTGACATCACACACGACATCCAGGCGCTGGGCTTCCaggacacacacggagacattGAGGAGGAAGACTACTACCTCTGATATCTCTGTGGTCTGGGACAGCTCTGCGTCCTGTTCACAGCTCTGCATCCTGTTCACCCCCCAGAGTCAGAACCAATCatggggaagcagcgttcagtttttacgctccacatatctggaacaatctcccagaaaactgcaggtcggCCGCAACGCTCAGTTCTTTTTAAATCAGGCTGGAAGACTTTATAACACCACACTGTAACTTTCATTCTTGTATTTCATATCTGTCTTATTTAATGTTAACTTTCTTTTatgattttaattgttttaactgctatttcatgttttatgtaaagcacttggAATTGccttgtgctatacaaataaagctgccttgccttgatGGAGAGATAAGAGGAAAAAgggaaa

Function

symbol description
ccm2l Acts upstream of or within anterior/posterior axis specification; heart contraction; and heart morphogenesis. Is expressed in heart and notochord. Orthologous to human CCM2L (CCM2 like scaffold protein).

NR:

description
cerebral cavernous malformations 2 protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63466 False 894 TUCP 0.57 5 6698011 6705887
XM_039801845.1 True 2473 mRNA 0.56 12 6697993 6720932

Neighbor

gene id symbol gene type direction distance location
xkr7 xkr7,LOC103148205 coding upstream 14082 6579186 ~ 6683911 (+)
sox18 LOC104941087,LOC103385144,LOC107094976,LOC100711530,LOC101485236 coding upstream 195813 6493569 ~ 6502180 (+)
rgs19 LOC103373111 coding upstream 304491 6346108 ~ 6393502 (+)
LOC120559680 fam187b,LOC104965325,LOC102795245 coding upstream 425313 6262023 ~ 6272680 (+)
oprl1 oprl1 coding upstream 463150 6063850 ~ 6234843 (+)
cables2b LOC101464377,LOC102312634,LOC102204736,LOC100701228 coding downstream 8770 6729702 ~ 6774102 (+)
LOC120558797 NA coding downstream 134245 6855177 ~ 6863948 (+)
LOC120558795 NA coding downstream 148647 6869579 ~ 6934548 (+)
LOC120558791 NA coding downstream 306145 7027077 ~ 7066173 (+)
LOC120558603 NA coding downstream 405692 7126624 ~ 7135842 (+)
G47503 NA non-coding upstream 9279 6632869 ~ 6688714 (+)
G47482 NA non-coding upstream 269995 6427468 ~ 6427998 (+)
G47460 NA non-coding upstream 443419 6242925 ~ 6254574 (+)
G47441 NA non-coding upstream 461167 6236194 ~ 6236826 (+)
G47428 NA non-coding upstream 840995 5856565 ~ 5856998 (+)
G47508 NA non-coding downstream 1807 6722739 ~ 6725198 (+)
G47516 NA non-coding downstream 112239 6833171 ~ 6915980 (+)
G47517 NA non-coding downstream 125116 6846048 ~ 7305481 (+)
LOC120558815 NA non-coding downstream 150761 6871693 ~ 6889136 (+)
G47522 NA non-coding downstream 153577 6874509 ~ 6875118 (+)
G47444 NA other upstream 497399 6199046 ~ 6200594 (+)
LOC120559501 NA other upstream 1922635 4772932 ~ 4775358 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 2832195 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 3183235 3448104 ~ 3514758 (+)
LOC120559414 NA other upstream 3393356 3279361 ~ 3304637 (+)
G47903 LOC104965021 other downstream 1391509 8112441 ~ 8116228 (+)
pkig pkig other downstream 1621818 8342750 ~ 8380578 (+)
LOC120559763 NA other downstream 1757191 8478123 ~ 8497394 (+)
LOC120559293 pifo other downstream 1933480 8654412 ~ 8662891 (+)
G48077 NA other downstream 1959350 8680282 ~ 8687964 (+)

Expression


Co-expression Network