LOC120558803


Basic Information

Item Value
gene id LOC120558803
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7161017 ~ 7252252 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU63546
CTAGGACTTGAGGAGGTTCAGGACTTAGCCCGGAcccatttaaaggaacacgccgacttattgggactttagcttattcaccgtatcccccagagttagacagagtagaagtccatacatacccttctcatctccgtgcgtgtcgtaactctgtctgacacacccaccgctagcctagcttagcacagatcctggaggtaacccgctccatctagcctactgctcctaataagtgacaaaataacacgcaacattttcctatttacatggtgtgatttgtatagtcacagcgtgtacaaataacaaggtcacatgagacacagccatcttctaacc
>XR_005639186.1
ttgggtgtgtgtgtccctgtggtggtggtgctggGGCTAGCTGTTGTTCTGCTGTTCTTCTACAAAAAGAGGACTAATCACTCTGATGGTTCAAACCAGAGAGGAAACACAGACATCACCAGGACTGAGATTAACATCTATGAGAACTGCCCTCCACTCTCCACCCGTGCAGACTCCACCTACCAGAGTCTGGATCCAGCCTCCAGGGATCCAGACCACATCTACTCTACTCTATCTTAGATACAACACCTATGATGATGTCAGCAAGAGTTTCTGCTGAATGCACAGCGAAGCCTGGCTGCTGCTCATGGCAGTGAAGGATTTTATTACCAAACAGAAGCGTTTCTAGGACTTGAGGAGGTTCAGGACTTAGCCCGGAcccatttaaaggaacacgccgacttattgggactttagcttattcaccgtatcccccagagttagacagagtagaagtccat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63546 False 336 lncRNA 0.47 2 7162409 7252252
XR_005639186.1 True 461 lncRNA 0.49 3 7161017 7162524

Neighbor

gene id symbol gene type direction distance location
LOC120558799 NA coding upstream 11631 7143788 ~ 7149386 (+)
LOC120558603 NA coding upstream 25175 7126624 ~ 7135842 (+)
LOC120558791 NA coding upstream 94844 7027077 ~ 7066173 (+)
LOC120558795 NA coding upstream 226469 6869579 ~ 6934548 (+)
LOC120558797 NA coding upstream 297069 6855177 ~ 6863948 (+)
LOC120558794 NA coding downstream 9450 7261702 ~ 7266435 (+)
LOC120558796 NA coding downstream 19166 7271418 ~ 7279008 (+)
LOC120558666 LOC100692487,LOC102794907,LOC102302796,LOC101487578 coding downstream 381628 7633880 ~ 7650645 (+)
LOC120558668 LOC101467015,LOC102195234,LOC101063096,LOC101170270 coding downstream 399821 7652073 ~ 7671014 (+)
lima1a NA coding downstream 478563 7730815 ~ 7764951 (+)
G47536 NA non-coding upstream 22131 6981415 ~ 7138886 (+)
LOC120558802 NA non-coding upstream 77943 7082881 ~ 7083074 (+)
G47543 NA non-coding upstream 97411 7062067 ~ 7063606 (+)
LOC120558814 NA non-coding upstream 159304 7000551 ~ 7001713 (+)
LOC120558806 NA non-coding upstream 167845 6990735 ~ 6993172 (+)
LOC120558808 NA non-coding downstream 57749 7310001 ~ 7313720 (+)
LOC120558816 NA non-coding downstream 61487 7313739 ~ 7316913 (+)
LOC120558807 NA non-coding downstream 141688 7393940 ~ 7395907 (+)
G47762 NA non-coding downstream 204223 7456475 ~ 7456739 (+)
G47768 NA non-coding downstream 216169 7468421 ~ 7469071 (+)
ccm2l ccm2l,LOC102778549 other upstream 440085 6697993 ~ 6720932 (+)
G47444 NA other upstream 960423 6199046 ~ 6200594 (+)
LOC120559501 NA other upstream 2385659 4772932 ~ 4775358 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 3295219 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 3646259 3448104 ~ 3514758 (+)
G47903 LOC104965021 other downstream 860189 8112441 ~ 8116228 (+)
pkig pkig other downstream 1090498 8342750 ~ 8380578 (+)
LOC120559763 NA other downstream 1225871 8478123 ~ 8497394 (+)
LOC120559293 pifo other downstream 1402160 8654412 ~ 8662891 (+)
G48077 NA other downstream 1428030 8680282 ~ 8687964 (+)

Expression


Co-expression Network