LOC120558807


Basic Information

Item Value
gene id LOC120558807
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7393940 ~ 7395907 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU63607
GCCTAATTAGGATTAAGGATTTGCACCTGGGGACCAGAGAATGGATTGACTGTTTTAGATAtaaaaaggagagaggagaggggcgCACGACGGAGGACACAGAGACCACAACGGCACAATGGGGCGGACAGAACGaagcagacaggcaggcaggcaggcaggcaggcaggcaggcaggcaggcaggcaggcagacagacagagacacagagaccgGGAGGCCTGAGAATACACCGAGGAAAACGTAAACACCGACTGCTAGCGGCTACAGTGGGAGAAGGCTTTGTCCGAGGAGAGGAGCCAGGCGAGAAGAAGGTGGTCGCCAGCGGATCCCGTGGACTGTCATTTAACCTCCCACTCCTGTTCTGCTGCATTATTTTAGCTTGGTTTTAGTTGGTTGTGCTTATTgcttttaatttcatttaagGAGGAACTTTAGTTGTTTTATTCCTCTTTAAATAAATCTGTTATCCCTCTACCAGTTTGTACTCACTGTTTTAAATACCACTGGTTTTAACTGCTCTCCCCCGACATAAAGGACCTGTTAATCTTTTATCTCAAATTTGAAAGTTGGTAGTTTTAAGAGGTCCTAGGCCTCAGTCAAACCTAGATGGCGTTGTCGGCCCCCATTTCAACTTATCCACGCCTTACCTTTATCCTGGGCTTTATGAATCTGCCTCAAAACACATCCTGACACAGTCCGAAGGACAGGaagttagtttgtttgtttcgagcaaatcaacacaaactgtcaAACTGGTACGGATAATACATATGATAAGCATAAACATTGAGTGAGAGTTAtgttaatgaaaataaattctTTATGCTGATTGATTTTGATTGATCATAACTTGTCTGATTGCTTTCAAAAGATTGATTTTTCTTAACTATCTGCAGCTGTAGTCAGATAGCAGCTCCACTCGGAGCAGATGGAGCTACAGAGTTCAAACAAACGCacctttttgttttatcttttgtcATTTGATTTTCCTCTGTGAAACACTGAAACTTAACTAAACCGAGGTGAGACCCGTCAAAGTTGACATCACCACCAGACATAAGATTTAGCCTCCCTTCCACCAAAATAATTTGTTTACAGTCCCTAAAATAGAACAAAACGTGTAAGCAATTATACTGTCCTATAAGATATGAAaaatagcagttaaaaatgttatttagacaaaatgtaaacctatgaaatattttatattatataaaaacattttcacacaatttgCGAAATTCTACTCCAATgagcaaaacattacacacagtgatttgtaaaactctacacacattttcacaccttAGACACAGATAAGGATAAGGAACGAATTGGATAAACACATCCACCAGGTGTGGAAGTACACATGTGCTAATTTGAAAACGCAGTACTCAGGTGTACTATAAAAGGCAGCAGGTGAGTTCACCGGTCTTCAACATAAATGGAAGGAGCTAGAAGAAGAGtgagaatgagagggggagctcaaagaggagatgaaggaggtagaggaagaggagaaggactTGGAGCCTGTGATGTGGATGAAATCTTGTTGCTTTTacagtagttttttttccagagtCAAAG
>XR_005639191.1
CTttggatttgctgtgtttttagtatttgatgtgtttttaccTTATGTTAttgtatgcttttattttgaaatgtcgtgtgtgtgtttttaaacgtTGGTTTTACTTCCGCCATCGGACATGTAGCCTAATTAGGATTAAGGATTTGCACCTGGGGACCAGAGAATGGATTGACTGTTTTAGATAtaaaaaggagagaggagaggggcgCACGACGGAGGACACAGAGACCACAACGGCACAATGGGGCGGACAGAACGaagcagacaggcaggcaggcaggcaggcaggcaggcaggcaggcaggcaggcaggcagacagacagagacacagagaccgGGAGGCCTGAGAATACACCGAGGAAAACGTAAACACCGACTGCTAGCGGCTACAGTGGGAGAAGGCTTTGTCCGAGGAGAGGAGCCAGGCGAGAAGAAGGTGGTCGCCAGCGGATCCCGTGGACTGTCATTTAACCTCCCACTCCTGTTCTGCTGCATTATTTTAGCTTGGTTTTAGTTGGTTGTGCTTATTgcttttaatttcatttaagGAGGAACTTTAGTTGTTTTATTCCTCTTTAAATAAATCTGTTATCCCTCTACCAGTTTGTACTCACTGTTTTAAATACCACTGGTTTTAACTGCTCTCCCCCGACATAAAGGACCTGTTAATCTTTTATCTCAAATTTGAAAGTTGGTAGTTTTAAGAGGTCCTAGGCCTCAGTCAAACCTAGATGGCGTTGTCGGCCCCCATTTCAACTTATCCACGCCTTACCTTTATCCTGGGCTTTATGAATCTGCCTCAAAACACATCCTGACACAGTCCGAAGGACAGGaagttagtttgtttgtttcgagcaaatcaacacaaactgtcaAACTGGTACGGATAATACATATGATAAGCATAAACATTGAGTGAGAGTTAtgttaatgaaaataaattctTTATGCTGATTGATTTTGATTGATCATAACTTGTCTGATTGCTTTCAAAAGATTGATTTTTCTTAACTATCTGCAGCTGTAGTCAGATAGCAGCTCCACTCGGAGCAGATGGAGCTACAGAGTTCAAACAAACGCacctttttgttttatcttttgtcATTTGATTTTCCTCTGTGAAACACTGAAACTTAACTAAACCGAGGTGAGACCCGTCAAAGTTGACATCACCACCAGACATAAGATTTAGCCTCCCTTCCACCAAAATAATTTGTTTACAGTCCCTAAAATAGAACAAAACGTGTAAGCAATTATACTGTCCTATAAGATATGAAaaatagcagttaaaaatgttatttagacaaaatgtaaacctatgaaatattttatattatataaaaacattttcacacaatttgCGAAATTCTACTCCAATgagcaaaacattacacacagtgatttgtaaaactctacacacattttcacaccttAGACACAGATAAGGATAAGGAACGAATTGGATAAACACATCCACCAGGTGTGGAAGTACACATGTGCTAATTTGAAAACGCAGTACTCAGGTGTACTATAAAAGGCAGCAGGTGAGTTCACCGGTCTTCAACATAAATGGAAGGAGCTAGAAGAAGAGtgagaatgagagggggagctcaaagaggagatgaaggaggtagaggaagaggagaaggactTGGAGCCTGTGATGTGGATGAAATCTTGTTGCTTTTacagtagttttttttccagagtCAAAGTGTATGTACTTCATGCagtaatgtttatttgtttacagattttatttgtttCGTTGATTTCATTGTTGgttgattactgtaactgattATGGTAAGACATACTGTAAGTATTGAAATAAATACTTGAAATATTCA

Function

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0007601 visual perception biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63607 False 1593 lncRNA 0.41 2 7394063 7395772
XR_005639191.1 True 1851 lncRNA 0.40 2 7393940 7395907

Neighbor

gene id symbol gene type direction distance location
LOC120558796 NA coding upstream 114932 7271418 ~ 7279008 (+)
LOC120558794 NA coding upstream 127505 7261702 ~ 7266435 (+)
LOC120558604 NA coding upstream 213743 7172361 ~ 7180197 (+)
LOC120558799 NA coding upstream 244554 7143788 ~ 7149386 (+)
LOC120558603 NA coding upstream 258098 7126624 ~ 7135842 (+)
LOC120558666 LOC100692487,LOC102794907,LOC102302796,LOC101487578 coding downstream 237973 7633880 ~ 7650645 (+)
LOC120558668 LOC101467015,LOC102195234,LOC101063096,LOC101170270 coding downstream 256166 7652073 ~ 7671014 (+)
lima1a NA coding downstream 334908 7730815 ~ 7764951 (+)
LOC120558968 LOC105935211,LOC103363443,LOC101066234,LOC106920718 coding downstream 369693 7765600 ~ 7773185 (+)
igfbp6b LOC103366149,LOC101464910,LOC100708122,LOC104966704 coding downstream 446239 7842146 ~ 7848434 (+)
LOC120558816 NA non-coding upstream 77027 7313739 ~ 7316913 (+)
LOC120558808 NA non-coding upstream 80220 7310001 ~ 7313720 (+)
LOC120558803 NA non-coding upstream 141688 7161017 ~ 7252252 (+)
LOC120558802 NA non-coding upstream 310866 7082881 ~ 7083074 (+)
G47543 NA non-coding upstream 330334 7062067 ~ 7063606 (+)
G47762 NA non-coding downstream 60568 7456475 ~ 7456739 (+)
G47768 NA non-coding downstream 72514 7468421 ~ 7469071 (+)
G47789 NA non-coding downstream 188756 7584663 ~ 7585957 (+)
G47794 NA non-coding downstream 207192 7603099 ~ 7603554 (+)
G47786 NA non-coding downstream 211983 7607890 ~ 7702736 (+)
ccm2l ccm2l,LOC102778549 other upstream 673008 6697993 ~ 6720932 (+)
G47444 NA other upstream 1193346 6199046 ~ 6200594 (+)
LOC120559501 NA other upstream 2618582 4772932 ~ 4775358 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 3528142 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 3879182 3448104 ~ 3514758 (+)
G47903 LOC104965021 other downstream 716534 8112441 ~ 8116228 (+)
pkig pkig other downstream 946843 8342750 ~ 8380578 (+)
LOC120559763 NA other downstream 1082216 8478123 ~ 8497394 (+)
LOC120559293 pifo other downstream 1258505 8654412 ~ 8662891 (+)
G48077 NA other downstream 1284375 8680282 ~ 8687964 (+)

Expression


Co-expression Network