G48002


Basic Information

Item Value
gene id G48002
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8332522 ~ 8333531 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU64109
cggACAGGATGGAGCTCTGCTTTCACTCAACAATGCGGCACCTTCCTgcgtaggggtgtgtgtgtgtttatttgtgctttaagAACATAACCGCTGCAAACTAttagaatatatattttttttattgctctgattactgctttgtaCAGGCACTCGCACCCTCTCTTGACATGAAACCATGTGAACCTATCCTTTCATATTTTTCCATTGAGAAAgagttctaaaaaaaaaaggtttctcaAACTTAGTTTGTTTAGTATCTACATACAGTCTGTCAGTCACATACTGGCCATTAGTGCTCTGTCTGCATGGTTACATCACCCCACaactcaaaaaaagaaaagatagagacggtttttgtgtatgtaacaGTCTAATGCTTTGCCTTAAACTGTAGATTTCCCTATGTATCATAAATCATCGTTGGAATCGTGTGCACCAAAGCAATATTCGTGTGTATTGTCAGGGCTCGTGTTACATAAGAGTGGATATACTTCTTTGTTAGGAAGTGGAAGTAGATGGCTGCTGTGGCTGAGAGAAAGAATACTAATACAATAGATTTACCAGTAAATGTTTTTGCTCAACTCTTGCACTGTATTTCAGGGCCTTTGTTTAGCCTATAGTTTTCTCTAACttgaatctttttttctaatttcagATAATCTgccttgtctttttttctatttttttaaaccttagTTCACCTGTTTACTCTCACCACTCAGTCTTAACACGGGGGCCATCACTGATCACAGGGGTCACATGTGAAATAGAACATTTAGTCCTGACTTTATCTGGTTTGCCAAATTTCCCACCAGGCCATGTACAGAAATGTGCAATAACGTTGGATCTGTTTTCTTGCGGTAGCCCGATCTAACTTGaatagtttttgtctttttatatttttatttgaagcaTGTCTGTGACTATAAGCTACATTGTGTTGCAGGATATTTATTGTTGGTAGTAAAGACCATAAAGTCAGTAAACTCAAATGGAGAAATTTGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64109 True 1010 lncRNA 0.38 1 8332522 8333531

Neighbor

gene id symbol gene type direction distance location
ttpal ttpal coding upstream 1208 8318835 ~ 8331314 (+)
hnf4a hnf4a coding upstream 15658 8290795 ~ 8316864 (+)
r3hdml r3hdml coding upstream 51976 8272646 ~ 8280546 (+)
gdap1l1 gdap1l1,LOC102776784 coding upstream 85517 8222038 ~ 8247005 (+)
LOC120558990 LOC105941124,LOC105016959,LOC106920718,LOC106934618 coding upstream 144973 8184236 ~ 8187549 (+)
LOC120559876 NA coding downstream 100362 8433893 ~ 8437384 (+)
ccn5 wisp2 coding downstream 103846 8437377 ~ 8444483 (+)
LOC120559919 NA coding downstream 116525 8450056 ~ 8463093 (+)
LOC120559921 NA coding downstream 121624 8455155 ~ 8456435 (+)
LOC120559920 NA coding downstream 132445 8465976 ~ 8467001 (+)
G47909 NA non-coding upstream 215300 8116380 ~ 8117222 (+)
G47881 agap2 non-coding upstream 430080 7842494 ~ 7902442 (+)
G47786 NA non-coding upstream 629786 7607890 ~ 7702736 (+)
G47798 fam120c non-coding upstream 712433 7617240 ~ 7620089 (+)
G47794 NA non-coding upstream 728968 7603099 ~ 7603554 (+)
G48017 NA non-coding downstream 47556 8381087 ~ 8381428 (+)
G48018 NA non-coding downstream 47960 8381491 ~ 8381729 (+)
G48039 NA non-coding downstream 114576 8448107 ~ 8448314 (+)
G48063 NA non-coding downstream 199065 8532596 ~ 8532801 (+)
G48075 NA non-coding downstream 340942 8674473 ~ 8677331 (+)
G47903 LOC104965021 other upstream 216294 8112441 ~ 8116228 (+)
ccm2l ccm2l,LOC102778549 other upstream 1611590 6697993 ~ 6720932 (+)
G47444 NA other upstream 2131928 6199046 ~ 6200594 (+)
LOC120559501 NA other upstream 3557164 4772932 ~ 4775358 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 4466724 3843064 ~ 3865798 (+)
pkig pkig other downstream 9219 8342750 ~ 8380578 (+)
LOC120559763 NA other downstream 144592 8478123 ~ 8497394 (+)
LOC120559293 pifo other downstream 320881 8654412 ~ 8662891 (+)
G48077 NA other downstream 346751 8680282 ~ 8687964 (+)
G48162 NA other downstream 383236 8716767 ~ 8726552 (+)

Expression


Co-expression Network