G48075


Basic Information

Item Value
gene id G48075
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8674473 ~ 8677331 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU64203
ccaaaacattaatcaagtcacATCCACAAATATCTGCTGCCCAGCAGCCAGACATTACTGTACCCTGCAGTTTTCAGTGTATCTCATTTTTTCCAGTCAACGGGGGCAAATTGCATATTCAACCAAATCTGACATAAAAGAATGGGTACAAAGTGACCCGTTCAAGGTGGCGATTTCATTTACTACCATTAGCATTAACATTGCAAGTGTTGTGTCCATTTACACCAGGAGGGGAGGGTTTCTTTAAGAAGCATGTAAGCGGATGGAGTTTCTCCGCCGAGCAGTCACCAGATGTTTGGCCTTGGTCTCTACCGTCTCTACCGTCTCCAGCACGTCCACACCTTCAGAGGGAACCAAGGTAGTGTGCTTCTCCTTCTTCGTCATCATCTCCCCAATCTGCTCTGCTGACGTGTCCTCATCAGTCTCTTCCTCCTGCACAAATGGCAGCAAAACAGTCTCCACCAGGCCGCCAACGACTCCGAGCATGGCCAGAGTGGAGCCAAGCATGTAGATCTTCAGCATGCCCCGGCCTGGCCTCTGGTTTAGCATCTCCTTAGCAAAGGGGATGATCTCGCCAATGGTTTCCATTGTGTGTGATTagTTTGCAGCAGACCCCAAGCTCTGACTTTTTCCTCAGTGTTCCCCCAGTCAGGCGTTTGCAGGCAGAAAGACAAGGGAACATCCTGCAATTTAAACACTAATGGAGCAAGGTTAACTCCCACAGTGATGACAGAATGCATATTCATGAGGCTACTGAAATCGCTTTTGTTGGAGATTAGGGCTTGTTTGGGTAAAAGGGCACGGGCTTCTAGGGCAAGAAGTGAAGCAAATATTCCCTGTAGGGGAAACTTTGCTTGTGACATCACATGAGGTCTGCATGTGTTGCCACAGATACagatctatccatctatctatctaccaaCTGTCTCAAAAAGACCTCCAACCATGCTCAT

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0019538 protein metabolic process biological_process
GO:0007281 germ cell development biological_process
GO:0006508 proteolysis biological_process
GO:0003006 developmental process involved in reproduction biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

RNA

RNA id representative length rna type GC content exon number start site end site
TU64203 True 953 lncRNA 0.48 3 8674473 8677331

Neighbor

gene id symbol gene type direction distance location
LOC120559286 NA coding upstream 20157 8645778 ~ 8654316 (+)
itih6 itih6 coding upstream 41648 8605863 ~ 8632825 (+)
LOC120559284 pfkfb1,LOC100700435,LOC101066702 coding upstream 68715 8562053 ~ 8605758 (+)
LOC120559288 NA coding upstream 104142 8569081 ~ 8570331 (+)
LOC120559290 NA coding upstream 113390 8558038 ~ 8561083 (+)
pfdn4 pfdn4 coding downstream 523421 9200752 ~ 9210559 (+)
LOC120558451 LOC100703402 coding downstream 556829 9234160 ~ 9236016 (+)
cd40 NA coding downstream 680641 9357972 ~ 9366078 (+)
zbtb48 LOC102780700 coding downstream 858076 9535407 ~ 9544237 (+)
syt6a syt6,LOC103150978,LOC106928401,LOC103467834 coding downstream 920295 9597626 ~ 9689330 (+)
G48063 NA non-coding upstream 141672 8532596 ~ 8532801 (+)
G48039 NA non-coding upstream 226159 8448107 ~ 8448314 (+)
G48018 NA non-coding upstream 292744 8381491 ~ 8381729 (+)
G48017 NA non-coding upstream 293045 8381087 ~ 8381428 (+)
G48002 NA non-coding upstream 340942 8332522 ~ 8333531 (+)
G48079 camk1g,LOC102780232,LOC102204221,LOC101478990,LOC103361639 non-coding downstream 13372 8690703 ~ 8700088 (+)
G48158 NA non-coding downstream 36988 8714319 ~ 8714568 (+)
G48160 NA non-coding downstream 38556 8715887 ~ 8716184 (+)
G48176 NA non-coding downstream 66303 8743634 ~ 8747729 (+)
G48205 NA non-coding downstream 149127 8826458 ~ 8826676 (+)
LOC120559293 pifo other upstream 11582 8654412 ~ 8662891 (+)
LOC120559763 NA other upstream 177079 8478123 ~ 8497394 (+)
pkig pkig other upstream 293895 8342750 ~ 8380578 (+)
G47903 LOC104965021 other upstream 558245 8112441 ~ 8116228 (+)
ccm2l ccm2l,LOC102778549 other upstream 1953541 6697993 ~ 6720932 (+)
G48077 NA other downstream 2951 8680282 ~ 8687964 (+)
G48162 NA other downstream 39436 8716767 ~ 8726552 (+)
LOC120559255 tshz2 other downstream 313156 8990487 ~ 9121912 (+)
G48347 NA other downstream 726893 9404224 ~ 9429947 (+)
ubxn10 NA other downstream 1245269 9922600 ~ 9925081 (+)

Expression


Co-expression Network