G48338


Basic Information

Item Value
gene id G48338
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9367885 ~ 9381444 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU64533
acagtttaataCCAAAATATCttcattatatatacatattgtgCAACAGTAACGGAGGCAAGTTTTTCACTTTGAGATTATACAATTAGCTTGAGCGTTAACTTCAACAAATGGGACGAACTTACAAACCAATGGTTACAAAGAACATCTTTTCCAACAAATGAAAGTGATGTCTGAAGCAATCCAAAAGACCGATGGACAACGTAAATGTAGTAGTGCAAATGTCTTTTTCAAACGTTAACCTAGCACTTCAGAACTTAAATTAAAAAGAATTTAAAGGACAATCCGTCGACAATCGCTACTTTGACACAAGTTTACCAGATTATGAGTCGGATATTGTGGCAAACGTCGTGCCAACAACTGGCAAGCACAGACAAACTGCAACGCGACCGAAAATCAGCCATTATACGACAGACATTTAGAGTCTATACCGAAGGTGGCTGAGTGACAACCCCTTCCAACTGGCATTGAATCCAAACCGTGAGCTGTATTAGCGGTGGAGGTAGCGATGAAAACTCAAACCAAATGGAATGTCTCATTGGCTCAGATAAAGTAACACGCTGATGGGTTTGAATGTTTGAAGCCAATTAACACAGAACACGCGTGCCGCGAGCAAGTTCTCCCCTGATCCCACCATATTGGCCTAATGTAGGAGTTGATAAAAGattcattacagagttctctgtttGATTTGAATGGTAGAGGAAGATTGCCAGCTCTATGAATTCATGGACATTATCTAATATTGGAGAATTACAACTTTTCTGCCAACGCAATGGTTTTGTTGCATCACAATCTCGGCTGTCAACAAGACTTTCATTGCCATTCAGGACTATGCAAAAAGATGGAGAAGAGGTGGGTCAGGAAAGGAGGAgggttatgtatttttttttctcctaattGCTGGTGGGAGGTGCATTGGGAGAGCAGGGGAGGAGCTTTAATGTTGTCCTCACCAaagatttatattttatttaaaattcccCTTGCAGATTAATTGTAAATCAAAAGGATCAAATGCAAAAATAGTGAAAATTAATAAATGATTATGCCATTAACATATTAAGGTTAAATGGAAAGGTTGTGGTCCACCATGTTAAattctttttgtcattttttgttattaatgGTGAATTGAGTTGTATCAATGATGTAATATTTTAAGATATTGTAGtttctttctaaatccaAATAAGTTATTAAAAACACTGAAGGGTCTTTGTTTAAACAGGAAGGTTCACCCCCCTCCCTACATTACTAACTTTCATACAGTGCCTTAGTTGACAGAGTAATTGTGATTTTAGAATAATGAATTCAgtaattttttttcccacataaTGGATTACTTAATAGTGTCTCTGCAATTGTGTTATAATGCCATACTGACAGATCTAAATCAACAGCTGTGTGAAAGGTCAAAAGTCAGTCAAACAACTTGTGGTATGTTTTGGAAAATGTTCAGCATTAAGTACAAATGATAGTACAACTGATTTTTAATAGGCCAAAACATACAAACCACCagtgtgctccttttttaaaggATAAGTCTGCTTCTTTTAAAGCAGAATATCTCAAACCATATTCTTTACACTGAGACACTTTTGCagtcctgttgttgttgttcattTTAACTCAAAAGGCGATGACAAGCTTAAAGAATCCACGTGACTCGAGCTTATTAAGGCATTAGTGACATATAGCAACATTCATTTCAAAAAAGGCTTCAAGAAATACTTTATGGTCAGTATAAATATTGATAATACACATAAGCATCAGTGTTCAGTACTGGGATGAGCTGTGTAGGTGCATCGGCAaacgggtgggggggggggattgtgTCTGTAAGCGGTGTCTATGTTTGTGTACATAACAAGTATGCACATTAACACTTCCATACATGTAGGTTTACATCATGTGTGTAACTATATATGCATGTAAGGATtaagtgtatgtgtgagtgtaggAGAGCAGAAATCGTTCCCCGTgtctgtttattttaattttttttctcagcgGGAGAATTTTCTGGGCCTGAATGCAGGAAGGATGAGCTGATGTGACGCCgtcctctcctcctctatcGGCGCCAGCTCCTCTGCTGAGCCCCACTTCTTCTTGGAGTGAAAGAGCGATACCAACTTTCTGTTCCTGTTCCGTTCTCTGGCCTGAGTGACTTGAAAATctgacagaagaagaagaaagaagcaACCAAAGTGAAATGATTAGGAAAAACCAGATGTTGGAAATATTCAGGGTTCAGCCCAAacctaggggggtccgggggcatgaTACCCCGGGgagattattttttctttttttatccattTACAGCAACtcattttttaatcaatttgaTAATAGAATGCTTAAAATtctgtacatcatttgggaaaaacatgatagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtgttcccctaa
>TU64534
tttttgtggttatttttttcatgctgGTGGATGGTGTGTCTATCAACTGCAGGGGTTTTCAAAGTATGTAGATGACATCGAAACTGTGCCAGAGACCCATAATGCTTTGGGGCACCCGGCACATTAAGAGGAAGTAGAATTGTTTGCCATGGATTCAGTGAGATGCTGTGAGCTGCAGCTTGACCCCGAtctatttatttcttttcttttttctttcccgTTGTTTGTGGCGTTACTGGCAGCATTAATAGTATGCCGAATTAGATACGAACAGTTCCTGTTTGCGTCGAACCCACGGACGTGCGGACAACTCTCACTGGATTACTGTGATCCtgaagaaaacttaaaaacgTGAAGATTCTCAGGGATTTGCATGGAGAGGTGAGGCCACAAGGCGAGGCCACAGCGCTCCCAGGGACGTTCGCATTATCCCTGGATTAATGGAGcgGGAGAATTTTCTGGGCCTGAATGCAGGAAGGATGAGCTGATGTGACGCCgtcctctcctcctctatcGGCGCCAGCTCCTCTGCTGAGCCCCACTTCTTCTTGGAGTGAAAGAGCGATACCAACTTTCTGTTCCTGTTCCGTTCTCTGGCCTGAGTGACTTGAAAATctgacagaagaagaagaaagaagcaACCAAAGTGAAATGATTAGGAAAAACCAGATGTTGGAAATATTCAGGGTTCAGCCCAAacctaggggggtccgggggcatgaTACCCCGGGgagattattttttctttttttatccattTACAGCAACtcattttttaatcaatttgaTAATAGAATGCTTAAAATtctgtacatcatttgggaaaaacatgatagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtgttcccctaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64533 True 2460 lncRNA 0.38 2 9378958 9381444
TU64534 False 893 lncRNA 0.45 3 9367885 9381444

Neighbor

gene id symbol gene type direction distance location
cd40 NA coding upstream 1807 9357972 ~ 9366078 (+)
LOC120558451 LOC100703402 coding upstream 131869 9234160 ~ 9236016 (+)
pfdn4 pfdn4 coding upstream 157326 9200752 ~ 9210559 (+)
LOC120559286 NA coding upstream 713569 8645778 ~ 8654316 (+)
itih6 itih6 coding upstream 735060 8605863 ~ 8632825 (+)
zbtb48 LOC102780700 coding downstream 153963 9535407 ~ 9544237 (+)
syt6a syt6,LOC103150978,LOC106928401,LOC103467834 coding downstream 216182 9597626 ~ 9689330 (+)
sdf4 sdf4 coding downstream 372625 9754069 ~ 9761924 (+)
LOC120559338 NA coding downstream 520546 9901990 ~ 9904443 (+)
LOC120559339 cptp coding downstream 535083 9916527 ~ 9918632 (+)
LOC120559475 NA non-coding upstream 22771 9301354 ~ 9345114 (+)
G48310 NA non-coding upstream 80223 9287059 ~ 9287662 (+)
G48294 NA non-coding upstream 111600 9243354 ~ 9256285 (+)
G48269 NA non-coding upstream 175676 9189378 ~ 9192209 (+)
G48264 NA non-coding upstream 184737 9180563 ~ 9183148 (+)
G48369 NA non-coding downstream 139314 9520758 ~ 9521651 (+)
G48365 klhl21 non-coding downstream 164630 9546074 ~ 9550823 (+)
G48381 NA non-coding downstream 214616 9596060 ~ 9596433 (+)
G48396 NA non-coding downstream 340719 9722163 ~ 9726205 (+)
G48397 NA non-coding downstream 346384 9727828 ~ 9730567 (+)
LOC120559255 tshz2 other upstream 245973 8990487 ~ 9121912 (+)
G48162 NA other upstream 641333 8716767 ~ 8726552 (+)
G48077 NA other upstream 679921 8680282 ~ 8687964 (+)
LOC120559293 pifo other upstream 704994 8654412 ~ 8662891 (+)
LOC120559763 NA other upstream 870491 8478123 ~ 8497394 (+)
G48347 NA other downstream 22780 9404224 ~ 9429947 (+)
ubxn10 NA other downstream 541156 9922600 ~ 9925081 (+)
agmat agmat,LOC102790280 other downstream 758154 10139598 ~ 10151251 (+)
G48640 NA other downstream 1232587 10614031 ~ 10750428 (+)
G48752 NA other downstream 1791151 11172595 ~ 11173654 (+)

Expression


Co-expression Network