G48400


Basic Information

Item Value
gene id G48400
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9764056 ~ 9766395 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU64613
CTCCGAGAACAGTTTTCTGTTTTGAGAAGATTTTATTGCGTATATACGGGTTAAGGTTCACTGTGTGTTCTATGTAATGTAGCACTTGACAACACAGCAGGATTGTAAGAACAACCATCATTTCACCAAACCAAAGATTTGTTTAGAAGCGGTTACATACTGAACATCAATCTTTATAAATGATCTTTGTCAGATTGGATTATTCACAATTCAAAACGCATTGCTGTGAATATTACAATTGTAATCTAAAAGGCTTTGACAGGATAGTGtgatagccaatcagatttGTATGTGCACGCTTTTACTTCACAGACACCACTTCACAAGACAAGAGCTTTTACATTTTCCCAAAATCATTAACATGTTGTCGTACAAATTAAACACAATATAAATAATGCGCCGACACGGAGAATCAGCGCAGCTGCAGTATTTTACGAACCTCTCCTGAATGCTACTCCGTGTCACACACATGCCACCTTAAGAATAGTtccaaaactgtaaaaaaacaaaaaaacaatcccCTCTAAATACACCTTTCTACTCTTGAATTGTACTGCAtcattcaacatactaaacATAGAAATATAATCAAGTCAATGGCCAGCACTAAAACAGAATTAacctgaaaacatttgaagaacACAGTGACATAGAATTATACAGTACATAgctttctttctccttttttttaagaatacaggtaaaacacacacacgcgcgtgcTGATTCTGACGATGACAATATTAATAATTAGAGAGCAGCGTAACAGTTAGTCAAGTTTCTCCTCAACACTCATttctcaaataaaataaaataaatttggggCTTAACATGTTGCAAATCAACTTAACATCGCAGTCTGTAAGTAGTAGAAGAAGTTTCAGCTTGATGTTTGGTCACTTGAATTTGGGACTTTGGCTACAATTCCTACTCGTTTCATCTGATGTGGATGTAAACACCCTGCAATTAAAGCTGAAAGTCTGCACTTTAACCTCATACTTACTTATTGTGTCATTTCGATATCTACCGTACTGGAGTGCAGAGCCAACACGATGATGAATGTGTCACTGTTCAGATATTCGCAGGCTGTGCCGTTTATCGCCGTTTATATACCTGCTGTATGCAACAAAAAGAAACTTGAAAAGTTGAAATAGATTTTTAAGGAAACTCACCatgattaaaatataaatacctTCCATGATGATTTGATCTGAAATAAATCAGAGaaagttgtaaaaaataaataaggactGGATGGTAAAGGAAAGTTAAAAGTCTAATCACAGCCACCCGTGATGAGCTTGTGCTCGTCTCTGGTCTCGGTCTCCATTTGGTCTGCGTGCAGCGCTTCAGGCTACGTTTACACGACAATGCTCACGCTGAACACGGAAAACTTCTTCCttttacgtttaaaaaaaaaaaaacgttcagCGTATAGACGGCATTGTTTTGAATGGACTGCATTGTAGTCCATGTCCTTGATGTTCCATTTCCGGGACTGCTCCGTTTCCGCCGGAAAATCCGCAgaatttcactcatttaggccggatatccgttgccttgggcttcctttgtgtcggcattctaaactccggtggatttctgagcaCTATGGTTAaccgctcctcagatctctgcagggtaaatccagacagctagctagactatctgtccaatctgagttttctgttgcacgactaagacaacttttgaacgaacacgttccaccaaaacaagttccttccgaacCTATTTAGCAGCGGCGCCGCGGCTTTTCtctggtgcttagcgccgcccaagacgattgtgattggtttaaagaaatgccaataaaccagagcccgGTTTTCCTCCcgtcccggaatgctgtgtggagtagaccagaccctcctccaacgcactttggaggagggtctggcaaagcgagactagcggGGGAAAGACTGCGCCGCTCCACAGAGAAAGCAGCTTTGCTAGTTTACACGGCGACGCTGGACTTGCCTATTCAAAAGATTTTAGGACTGTGcaattaataaattttttttaatcgcgattacgATTTGagctaatgatcacaaaaacagaagcgagaaaaattattattttgcacatgACGTTTTGCaggtaaactcttattttgtcttgtgttctgaatgaaaaaaaaaaagtattaggGGAAATTTAACAGTtctaggtgttttcactgtttgatttgtttaattgtgtttttttaaattcaataattgaaacatctttccaaaagacaatgagtaatcatgttaaataatcgtgatttcaatattgaccaaattaatcgtgattatgatttctccaataatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64613 True 2340 lncRNA 0.39 1 9764056 9766395

Neighbor

gene id symbol gene type direction distance location
sdf4 sdf4 coding upstream 2132 9754069 ~ 9761924 (+)
syt6a syt6,LOC103150978,LOC106928401,LOC103467834 coding upstream 74726 9597626 ~ 9689330 (+)
zbtb48 LOC102780700 coding upstream 219819 9535407 ~ 9544237 (+)
cd40 NA coding upstream 397978 9357972 ~ 9366078 (+)
LOC120558451 LOC100703402 coding upstream 528040 9234160 ~ 9236016 (+)
LOC120559338 NA coding downstream 135595 9901990 ~ 9904443 (+)
LOC120559339 cptp coding downstream 150132 9916527 ~ 9918632 (+)
vwa5b1 vwa5b1 coding downstream 170154 9936549 ~ 9969923 (+)
fam43b fam43b coding downstream 229893 9996288 ~ 9999314 (+)
LOC120558778 NA coding downstream 256945 10023340 ~ 10116835 (+)
G48399 NA non-coding upstream 11511 9752026 ~ 9752545 (+)
G48398 NA non-coding upstream 12408 9751330 ~ 9751648 (+)
G48397 NA non-coding upstream 33489 9727828 ~ 9730567 (+)
G48396 NA non-coding upstream 37851 9722163 ~ 9726205 (+)
G48381 NA non-coding upstream 167623 9596060 ~ 9596433 (+)
G48415 LOC103359731 non-coding downstream 37344 9803739 ~ 9804346 (+)
G48481 NA non-coding downstream 153653 9920048 ~ 9920808 (+)
G48507 NA non-coding downstream 244441 10010836 ~ 10014383 (+)
G48594 NA non-coding downstream 637657 10404052 ~ 10404759 (+)
G48602 NA non-coding downstream 745427 10511822 ~ 10542926 (+)
G48347 NA other upstream 334109 9404224 ~ 9429947 (+)
LOC120559255 tshz2 other upstream 642144 8990487 ~ 9121912 (+)
G48162 NA other upstream 1037504 8716767 ~ 8726552 (+)
G48077 NA other upstream 1076092 8680282 ~ 8687964 (+)
LOC120559293 pifo other upstream 1101165 8654412 ~ 8662891 (+)
ubxn10 NA other downstream 156205 9922600 ~ 9925081 (+)
agmat agmat,LOC102790280 other downstream 373203 10139598 ~ 10151251 (+)
G48640 NA other downstream 847636 10614031 ~ 10750428 (+)
G48752 NA other downstream 1406200 11172595 ~ 11173654 (+)
G48765 NA other downstream 1548267 11314662 ~ 11315992 (+)

Expression


Co-expression Network