G48671 (LOC103365835,LOC104948831,LOC100710642)


Basic Information

Item Value
gene id G48671
gene name LOC103365835,LOC104948831,LOC100710642
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10867858 ~ 10871077 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65008
TTAAAAAAGTTATTcatcctttgctttttattttttttatatttaatccaAACAGTCACATTGGAATGTTAGCAATGAAAAGATACAAAATGGATCGAAAAGGAGAAATCAATGCGAAGCATCCCATTTATATAGCAGAATATTTTTTGCTTTGTTCCAGGTCGACTACGGGATATTGCAGTTTCCTTTTTAATTCGATCTCAggtcagtaaaaaaataaaaataaaaaataaaatgcttttacaggacaaaaacaaaatcacagaTTTGGGGTGCAACAGAAGTACATATTTTAGTACACCATAAGATATGAAAAGAAATTCTTTGGCACATAAAAAGGTGTTGGTACACAAAATCAAAACAGGACAAAGTAAGTCATCATACTATACACACTGCACAATAGAATACGGATAGAAAAATAGCATACACAGAATATTAAAAAGAGAGTAACACTGATAAAGTAACAGTTGACAGTACGAGGCCCTGCGCCGAGGCCTTTAGGAGTCTGTTGGTTGGTTGGATGATTTTCAGCAGTGACTATACATCCACTGTAAAGAGGCCTGTTGGCTTTGGTTGATTGATTTCAATACAGTTTGCAGTGATAGATTGGAGAATTCCTTGCGGCTACCCCTTTTCAAGAAAATggtgtgataaaaaaaaacaaaaaaaacgttagTACTTTGTCCTCCTCACCATGGGGAATCTCGGTGGACCAActcattttacaaaaatgtacacTGGCTAATGTCTCATGTACATTTCGGACTCATCGTTCACTCACATACATGATCAAAATCAACCACTTGTTatcaacatacatacatacatacagtaagcAAAGGAAGCTTAGAGGCATGTATGGATATACCTACAGCCGATTACACAGTACAGATGCAAGTATACgttgacacgcacacacacacacacacacacacgcaggatttgacagcagcacacacattcGCGCGCTGATCAATAACTcaataacacaaacaagatGAGAGCCCAATGGATTTTCTCTCCGAGTTTGTATACAGATTTAAAAGGCAGAGTGATTtatttcctctctgtctgccACGGCTTTACAATAAACTAAGGAACAATTTCATTGATGTGCTTATGCTGGATTTACTAGTGGCGGGTTGCTTGGAGCTTTGAACCTGATGACATGCAGAGACCCTTGCTGTGTGTTGACAACATATGGCTGTGACTCCAGAGGCTGCAGTCATCATGGGAACCAGTTTGTGATTAATGCTAAAATACACTCTCTTCCCACCCAGAGCTGCCCATCTCCCGTCTCTCGTCTCCAGCCTGACTGCCGTCAACAACTCAGGGACCGAGCCTTTGTCATCACCAACGTCACCGCCATAATCGTCAGACTAGTTTTCCTGATGTTTATTGCGGCACATAGCCAAAAGAGAATGAGGCAAGAGGACTATAACAAGAGGAGCGTTGATGTAGGAAATAGTTCTAGTCCCTGATGTCCACTTTGCTGTGGACTCTCTGTGGTGAAGGAGGCAGGAGTGGATGCAGAAGGTGGGGGCGGGGTGCATTTGCataggcatgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtttgtggggGTAGTTCCTGGGCTGCAATTATGTGTGGATTATTTTACAGCTCGGTGTCGGCTGTCTTGGTGGTGGAGTGGCCGTTGGTGGGAGGAGGAGGCTGGGTCTTGGCTTCCTCGGGGGACTCTCCATTTACGCTGGGTTTCTCCGGAGTTTCCGGAGGGGGGTTGAGGGGAGCCACAGATACAAGAGTGTTCCCCTGGTTTTCCTGATCTGCTGGATAGGCCTCCTCTGCCAGCCTCACTCCTTTGGCGTCGGACCTGCGTGGGCATTTGAGGTAACCTACAACGATTGCAAGGGCGGCAAGCAGACCAGTGACCAGAATTcccacaaagacagaggaaccTGATGATGACGGGGTCTCAGTCTTTG

Function

NR:

description
PREDICTED: uncharacterized protein LOC103365835

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65008 True 1988 lncRNA 0.44 2 10867858 10871077

Neighbor

gene id symbol gene type direction distance location
LOC120558407 NA coding upstream 56306 10758397 ~ 10811552 (+)
LOC120558406 NA coding upstream 120305 10593784 ~ 10747553 (+)
LOC120559192 NA coding upstream 284329 10574601 ~ 10583529 (+)
LOC120559190 LOC103365742 coding upstream 327506 10530663 ~ 10540352 (+)
magi3a magi3 coding upstream 341524 10326748 ~ 10526334 (+)
LOC120558497 NA coding downstream 446353 11317430 ~ 11328619 (+)
rapgef3 LOC103365870 coding downstream 481537 11352614 ~ 11382149 (+)
dazap2 dazap2 coding downstream 627795 11498872 ~ 11503554 (+)
si:ch211-210c8.6 LOC103365959,LOC103139179,LOC106936181,LOC105935261,LOC100690432,LOC102797068,LOC102213155 coding downstream 645567 11516644 ~ 11520131 (+)
LOC120558490 LOC102302598,LOC100690975 coding downstream 661122 11532199 ~ 11563315 (+)
G48648 NA non-coding upstream 93062 10711712 ~ 10774796 (+)
LOC120558408 NA non-coding upstream 230213 10636476 ~ 10637645 (+)
G48639 NA non-coding upstream 281315 10586159 ~ 10586543 (+)
LOC120559193 NA non-coding upstream 307618 10544009 ~ 10560240 (+)
G48602 NA non-coding upstream 324932 10511822 ~ 10542926 (+)
G48680 NA non-coding downstream 36283 10907360 ~ 10960482 (+)
G48679 NA non-coding downstream 39066 10910143 ~ 10912072 (+)
G48755 NA non-coding downstream 337210 11208287 ~ 11208634 (+)
G48763 NA non-coding downstream 358930 11230007 ~ 11230366 (+)
G48803 NA non-coding downstream 563967 11435044 ~ 11456874 (+)
G48640 NA other upstream 117430 10614031 ~ 10750428 (+)
agmat agmat,LOC102790280 other upstream 716607 10139598 ~ 10151251 (+)
ubxn10 NA other upstream 942777 9922600 ~ 9925081 (+)
G48347 NA other upstream 1437911 9404224 ~ 9429947 (+)
LOC120559255 tshz2 other upstream 1745946 8990487 ~ 9121912 (+)
G48752 NA other downstream 301518 11172595 ~ 11173654 (+)
G48765 NA other downstream 443585 11314662 ~ 11315992 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other downstream 1213375 12084452 ~ 12090773 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other downstream 1221702 12092779 ~ 12103899 (+)
nol4la LOC103354513,LOC100696587 other downstream 1311132 12182209 ~ 12210409 (+)

Expression


Co-expression Network