G48679


Basic Information

Item Value
gene id G48679
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10910143 ~ 10912072 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65016
TGGGGGAGATCTCCCATCAGCTGACAACAAAAGCTGGCGTGACTCATTAGCACTTGATAGAATCAAAGATGGACCCTTGGAGCACTTCTGATGTGCGACAGCATGCATGCAAAGTACACACAAAGTGGATCAAGTTCCCAAATAGATACAAACTGTGGTTATATGGTGGAGATTCTTAGCTTAGACACCAATTGCTCTTGTTTGGTCTCTACTAAGtgcatctgcacacactgcgTAGGTATGAGCAGACACAATGCAGACGATACACACTCTCCtctagcagaaaaaaaaaaaagtggtttagGGTAAATAATGTTCGGGACGTGGTTGGACGGGCTCGGGCCAGGACGGACAAATGGAGTCGTTCGCTCGACGAGCTACTGCAAATACCTACGGAGCTCAGTTCAACTGAGCCCCTTTTCTGTTTGCAAAACTCAAATAGACATACAAACggacaaacaaattaaaaacatttgtacATTCACATAAACAGATTGGCAAGTATCAACCGGTACATACACAGATGACCTAACtgctggaaaaataaaaaaacaacaaccttggACACCAGATTGATGCTGATTCATGGTAATCTCCTAAATACACTATAGGCCTTCCTCTCCGTCATCCTCAGTTTAGGTGCAAGCGTGCTGGCTGAACTGTTGACCATCCATCGACTCTTAGATGACGAGcacaagtttttttgttttcttttaaggTTTCCTGTACACTTCTGATTGGAGGAAGAGCAGAGGTTATGTCCGTGTCACGCGGAGCGTCAGTCCGAGGAGGGAAAGGAGCGAGAGAAGACATGGAGCGTGGCCTGTTTCACCACCGCGCTGCCCGTCTCTTTACGTCTTTGCACGACAACACTTGCGGGAGACCGGGAGGCGGATGTTTTCAACTGCAACTGATAATATTCAAAATgtacaagtaaaaaaataaaaatctgggAAATCTGAACGCAAACTCAGCAGCAGTCCGACATGAGATCTGCTCCTCTGCTTCTCGccgtcattttcttttctttttttttgtctccattTCACACTCAGGTGTCAGCTTCTGACTGAGTGGAGAATAAAATCTGTTCCTCCGTTTGCTCTCACGATTTGGCAGAGTCttactcagacacacacacacacacacacaatttcctGTCAAACTGAGAGAAAATATACTTTGCGAAAAAAAAAGGAAcggacaaaaataaataaatacacgcCATGTTCTTGCCTTCTCTGCTGATGGTCCTTCCTCATGCCAATTATCAGCTCCAGCTGCAGGGCCTCTATCTCAGTCTGTGGGCCCTTAGCTGGTGCCATCATGGAAGGAAGGGAAAGAATTACAAACTAAAGCTGTTGGATGTCTGTCCGACAGTGAATACAGAGAGGTCCCAGGTCTGGTTTTCGTGGCGGTAGCTCCCACGATGAGAGGTAAGTAATGCGGGACCTTCGTGCGAGGGCCCTGTAGAGGCTTGTGGTCCTGTCTCTCTCGGTGTTGGCTCTCTCTTTGAGTGGCGGTCGCTCTCAGCTCTCCAGGGACATGGCCGCGATCAGCTGCTCCACCTTGTAGGACAACCTCTGCTTCCTCGCCTGTTCGTCCTGCTCCAGGGCGGCCGTGATCTGTGCAGGACAAGGAAAAACTTTGGTCAAATACCagccagaaaaaaaatgtaattaaaaaaatacatattccGACTGCATCCTTGGTGGTTGTGATACAATAATAGAATTACATCTGACAACATTTCGTAGAGAAATGCGTATTTCGTTATGGAGCGGAGCCTGTTTTCAGTGATTGAAGgaatattcagatcctttacttaagtaaaagtactaataccacactgtaaaaaattcTCTGTCACAAGTAAAATTGAATtaattacttaagtaaaagtatttaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65016 True 1910 lncRNA 0.45 2 10910143 10912072

Neighbor

gene id symbol gene type direction distance location
LOC120558407 NA coding upstream 98591 10758397 ~ 10811552 (+)
LOC120558406 NA coding upstream 162590 10593784 ~ 10747553 (+)
LOC120559192 NA coding upstream 326614 10574601 ~ 10583529 (+)
LOC120559190 LOC103365742 coding upstream 369791 10530663 ~ 10540352 (+)
magi3a magi3 coding upstream 383809 10326748 ~ 10526334 (+)
LOC120558497 NA coding downstream 405358 11317430 ~ 11328619 (+)
rapgef3 LOC103365870 coding downstream 440542 11352614 ~ 11382149 (+)
dazap2 dazap2 coding downstream 586800 11498872 ~ 11503554 (+)
si:ch211-210c8.6 LOC103365959,LOC103139179,LOC106936181,LOC105935261,LOC100690432,LOC102797068,LOC102213155 coding downstream 604572 11516644 ~ 11520131 (+)
LOC120558490 LOC102302598,LOC100690975 coding downstream 620127 11532199 ~ 11563315 (+)
G48670 NA non-coding upstream 11011 10855502 ~ 10899132 (+)
G48671 LOC103365835,LOC104948831,LOC100710642 non-coding upstream 39066 10867858 ~ 10871077 (+)
G48648 NA non-coding upstream 135347 10711712 ~ 10774796 (+)
LOC120558408 NA non-coding upstream 272498 10636476 ~ 10637645 (+)
G48639 NA non-coding upstream 323600 10586159 ~ 10586543 (+)
G48755 NA non-coding downstream 296215 11208287 ~ 11208634 (+)
G48763 NA non-coding downstream 317935 11230007 ~ 11230366 (+)
G48803 NA non-coding downstream 522972 11435044 ~ 11456874 (+)
G48804 NA non-coding downstream 526200 11438272 ~ 11438557 (+)
G48805 csrnp2 non-coding downstream 547270 11459342 ~ 11459749 (+)
G48640 NA other upstream 159715 10614031 ~ 10750428 (+)
agmat agmat,LOC102790280 other upstream 758892 10139598 ~ 10151251 (+)
ubxn10 NA other upstream 985062 9922600 ~ 9925081 (+)
G48347 NA other upstream 1480196 9404224 ~ 9429947 (+)
LOC120559255 tshz2 other upstream 1788231 8990487 ~ 9121912 (+)
G48752 NA other downstream 260523 11172595 ~ 11173654 (+)
G48765 NA other downstream 402590 11314662 ~ 11315992 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other downstream 1172380 12084452 ~ 12090773 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other downstream 1180707 12092779 ~ 12103899 (+)
nol4la LOC103354513,LOC100696587 other downstream 1270137 12182209 ~ 12210409 (+)

Expression


Co-expression Network