G48680


Basic Information

Item Value
gene id G48680
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10907360 ~ 10960482 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65017
CAAAATAGGTGTGCTTCATATTTACAATAGGTACACAATAATATATTATCATAACAAAatcaaagcaaataaaaaaaaacaagagaacaaccttttttaaatactttaagtTTCTTACAATTTTCACAACACTTTTTATAAAACAAGAAGAACAGAcagccattattattattatcatcatcatcgttaTCATCGTCATTGCCAGTAATTACTATTTTACAGAACTCCAGTGTCTACAAAGGGTTTGTTTACAATGGGTTTAAAATGGAAGTATAGTCATTACATATTTTGTGATATTTTGACTTGAGAGTAATACATCGGATCCCTCAGGGTTTCAATTCATCGGTCTGATGCCATgaagcaaacaacaacaaaaaatgctgATTAAATGCTTTGTTTTGTATAAGGAATGATGATGACACGCGCCAGTCAAAACCACAACCCCCGTCTCTTCGGCAACGCGTTACACCGAGAGCAAAGAAAGTGCACAAAGCGCCTTCAATTAGCAATCCGCTTGAGCTGAAATGAGGTTGTGTTTATGAGCGTCTATCCATCGCTCACACGACCCGACAGTCAGATGGGATTCTGCGCTGCAGAACGCGAGTAAACAAACTTTTCTCTTCTCAGTTCAAACTGAATTAAAACGATCCTGGAAACGAGTGTACATGGAAACAAGCTACTGTATATCTaggaacagaagaaaaaaaaaaaaaaaaaggtgcattCAGCTGTAATGTAAGACATGTATAGGCTACATGGGCTTCCGGTAAGAATTTGCAGTTAGACTCTAATGACGGCGCGTATCGATATGGAATAAAAGGCAGAACTGAAGCATGAATTAAAACGCATGCAGAAAGAGGAAACATCCTGATATAAATGATCTCGGAGAGCGGAGAGAGAAATCAAAGCCACTCGCAACCAATTTGTGCGCCTCCGATTGCGTTCGTCACAATTCTGAACACAGGGGAGCTCATCTGAGAGTGGGAAAGACTCGAATAAACATACATTTGTTTAATCCCTTGCAAAAAAGGAAAAGGCATTTAGGTCCtgttaaaatgataaaaagcatTACTCCATACAAGCAATGTGAGGTATGAGGAGGATACAATTCTATTTGCTGAAATTGGGAAGACACCTTAATCAAAAGGAAGAAGCTTTATGtttatgtactgtacagtatatgtgcgccATTGTGTACCTATAGATGTTTATTAGGGGGTTAGcgatagggctgggcaatatatccatattatattgatatcgatGTATGAGGCTAGATATAACGTCTTCAATTCTGGATATCGCAcgtgacacaagtgttgtcttttcctggttttaaaggctgcattaaagtaaagtgatgtcatttcctgaactctccagactgttctagccattttattatttccctttacccacttagtcattatatccacattatttatcaaaaatctcatcgtgttaatattttgtggaaGCACCAATAGTCggccctacaatatcgccgcaatctCGACATtgaagtatttggtcaaaagttttgtgatatttgattttctctaaatatcgcccagctctagttaaGAGAGCGAGAAGgtgcctattttttttttcttttttttttccagatgaGGGAACAAATTATAAAATCTAATCTTTCCCACATGTGCCCCCACTGGCCGGACACAGTAATAGCATGTCAATCATCACACCATCCTACATTTCTCCTTGCCTGttagtttgatgtttttttttttcttcttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65017 True 1764 lncRNA 0.37 2 10907360 10960482

Neighbor

gene id symbol gene type direction distance location
LOC120558407 NA coding upstream 95808 10758397 ~ 10811552 (+)
LOC120558406 NA coding upstream 159807 10593784 ~ 10747553 (+)
LOC120559192 NA coding upstream 323831 10574601 ~ 10583529 (+)
LOC120559190 LOC103365742 coding upstream 367008 10530663 ~ 10540352 (+)
magi3a magi3 coding upstream 381026 10326748 ~ 10526334 (+)
LOC120558497 NA coding downstream 356948 11317430 ~ 11328619 (+)
rapgef3 LOC103365870 coding downstream 392132 11352614 ~ 11382149 (+)
dazap2 dazap2 coding downstream 538390 11498872 ~ 11503554 (+)
si:ch211-210c8.6 LOC103365959,LOC103139179,LOC106936181,LOC105935261,LOC100690432,LOC102797068,LOC102213155 coding downstream 556162 11516644 ~ 11520131 (+)
LOC120558490 LOC102302598,LOC100690975 coding downstream 571717 11532199 ~ 11563315 (+)
G48670 NA non-coding upstream 8228 10855502 ~ 10899132 (+)
G48671 LOC103365835,LOC104948831,LOC100710642 non-coding upstream 36283 10867858 ~ 10871077 (+)
G48648 NA non-coding upstream 132564 10711712 ~ 10774796 (+)
LOC120558408 NA non-coding upstream 269715 10636476 ~ 10637645 (+)
G48639 NA non-coding upstream 320817 10586159 ~ 10586543 (+)
G48755 NA non-coding downstream 247805 11208287 ~ 11208634 (+)
G48763 NA non-coding downstream 269525 11230007 ~ 11230366 (+)
G48803 NA non-coding downstream 474562 11435044 ~ 11456874 (+)
G48804 NA non-coding downstream 477790 11438272 ~ 11438557 (+)
G48805 csrnp2 non-coding downstream 498860 11459342 ~ 11459749 (+)
G48640 NA other upstream 156932 10614031 ~ 10750428 (+)
agmat agmat,LOC102790280 other upstream 756109 10139598 ~ 10151251 (+)
ubxn10 NA other upstream 982279 9922600 ~ 9925081 (+)
G48347 NA other upstream 1477413 9404224 ~ 9429947 (+)
LOC120559255 tshz2 other upstream 1785448 8990487 ~ 9121912 (+)
G48752 NA other downstream 212113 11172595 ~ 11173654 (+)
G48765 NA other downstream 354180 11314662 ~ 11315992 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other downstream 1123970 12084452 ~ 12090773 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other downstream 1132297 12092779 ~ 12103899 (+)
nol4la LOC103354513,LOC100696587 other downstream 1221727 12182209 ~ 12210409 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G15288 NA non-coding CI01000001 null 4240551 ~ 4273985 (+)
rainbow trout (Oncorhynchus mykiss) G827668 NA unknown NC_048573.1 CM023227.2 61028372 ~ 61072365 (-)
eurasian perch (Perca fluviatilis) G12850 NA non-coding NC_053112.1 CM020909.1 48339192 ~ 48339516 (+)
bowfin (Amia calva) G46333 NA unknown CM030125.1 CM030125.1 40273391 ~ 40275098 (-)
tiger barb (Puntius tetrazona) G158489 NA non-coding NC_056721.1 CM032090.1 16832106 ~ 16836166 (+)