G48803


Basic Information

Item Value
gene id G48803
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11435044 ~ 11456874 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65170
TCCTTTTAAAAtcagtgttttattgtttttatttttgtataaaaaaaaaaaccaacctttttttccactttagGCAACAGTTAGCATGAGAGTAGTTCTCACAGCTTTTAGGTGAAGTCTAGACATATCAGTCTTTTCTAACAATCGCACACCCCtttcacacagagaaacacacaatcacatagtGTACTGGAGTTAATTGGATGCAGTGGTCCCAGACCTAGGTCTATTAGTAGAAAGCCAAGGACAAAAGCTCATAATAATAGGCAGCTTTTAATCATCATCACTTTAAAGATGGTACTATGTTGAGGCAAGTCACGCGAACACACAAAAGGCCCACAATAAATCTAAAGCCTCACATTAACTACAGGAGaccggtttttttttttttttcttcaatctgATGGTTCAAAGCGTCATCTAATTAGGGTTGAAACCACTGCTTTGGTGCAACTCTTAAGCAGATTTATATTaagacaatacaaaaaaaagtaaaaaaaaaaaaggcaaagaaacCCAATCGGACACCTCATACACGGCAGCACATCCTGTGTTCGGCGAGCCGTCGCCAAAAGCGACAGCTGTAATTTGTAGGCAACAAAACAAAGGACTGATTTTGTGTAAGAAGAGTCGGCACACTTACGCAGATCAGTATTAATCAGACATCGcttaaaaaagacatttaaagacaggCAATGTTATACGATTGCATTTACATactcaatgacaaaaaaaataaatgactctCCAGAATCTCCACATGAATAGTTTGCGGTGCAGAAGGCCTAGCTATTGCGTTTCTACGAGAGGCTCTGCAACACTTTTTACTTCTAAACATCAGTCATCGAGGAACAGCTCTGTGAAATCAGATTTCTCATGatggcggagagagagagacagagagagagagagagagaaaaagaaaaaaaaacaaaaacaaactgtgaatcGTAAATATGTAACATCAGCACCTTTCAGGAATAAAATATGTATCCTCACTAATAtactcccccctcccccttttcataatacagtacatatacatGTACACACGGATGCATACAACACTCCCTCGCTCACACAGACACGGTAATGTaaagcgcgcgcgcacgcacgcgcgcacacacacacacacacacgcacacacactaaaatATACAAAGTCAGTTCGTTGTCAATCTGTTTCATAAGTTAGTAACCTCACATCACTTTGTAGAACTACTTTCTTTGACTCTTCCCATGCTATATTCTTCATATGCAATCGGACTTGATTCGGAAATCATCTCTTCCTCATAATGTAGTAGAATTCATTAAAAGAGGAGAGGCCTGGGGAAGATCTATCCTGGCATGACATGACTGACCACATGGGGTTACGGCTATAGCAGTATAAAAGATCTCCTTTcactccaaaaaaaaacaacaacaacaacaacaacaacaaaagaaaacaaaagactcaGGACTTCAAACCAACAGGATCTAATCCACAAAAGACACATTAATCAAGGAAATAATAAGGAATATCATAGGCATTGGAACTACAGGTAAACTAGAGGTTCTGTCGACAAAAATCCACTGCATTTGCACGAGCGGCGCGAGGTGAGCAAGAGCAATAACTAAGGCCCGGTGTTGGCCGCTGCTCTGTGTTGGTTTTCCTTCGTTAACAGCAGCGCCGCCAACACTGGCCCTCGGCTTCACAATGTGCGTACggttaaaaaatttaaaataaaaagcagcGACCTCGGCTCTGTCTTGCACATTGCaaatgcatatacagtacacaaaaaCAAGTATTTCCAGGATAATTAGGTCTGTTTTCAGCGGAGGATACTATCGGAGGCCTTTATTTGGCTTGACTACAGCACAGGTTCGCTGTAAGGGGGAGTGAGCGAGTAGGGATCTCGACTCGTGAGCTTCGGGCTCACCGCAAAACTATTTGTGTTTAGCATCGATagctttgtttttatgttggttTTTTTGATCATCACCAAACAAAAGGCTTACGTCAGCATTCCCACGTTGCGTTTTTCTGTTCGCTACGATGGGAATTAACAAAGCACTACTTGCTGTGTACTTTCCCATCGACTCCTACACACAAGTGttactttttgatttttttttttaatgttttttccaTTAAGGCCGTATTCATCACCCCTAAACTGAATTACGTACAATGTTTCCTTGTAACTGCATCCATATTACTTCTCGGGAGTAGTCTGTATGTGCTTTCA
>TU65171
agaaagaaaaaaaaaaaaaacaaaaacaaactgtgaatcGTAAATATGTAACATCAGCACCTTTCAGGAATAAAATATGTATCCTCACTAATAtactcccccctcccccttttcataatacagtacatatacatGTACACACGGATGCATACAACACTCCCTCGCTCACACAGACACGGTAATGTaaagcgcgcgcgcacgcacgcgcgcacacacacacacacacacgcacacacactaaaatATACAAAGTCAGTTCGTTGTCAATCTGTTTCATAAGTTAGTAACCTCACATCACTTTGTAGAACTACTTTCTTTGACTCTTCCCATGCTATATTCTTCATATGCAATCGGACTTGATTCGGAAATCATCTCTTCCTCATAATGTAGTAGAATTCATTAAAAGAGGAGAGGCCTGGGGAAGATCTATCCTGGCATGACATGACTGACCACATGGGGTTACGGCTATAGCAGTATAAAAGATCTCCTTTcactccaaaaaaaaacaacaacaacaacaacaacaacaaaagaaaacaaaagactcaGGACTTCAAACCAACAGGATCTAATCCACAAAAGACACATTAATCAAGGAAATAATAAGGAATATCATAGGCATTGGAACTACAGGTAAACTAGAGGTTCTGTCGACAAAAATCCACTGCATTTGCACGAGCGGCGCGAGGTGAGCAAGAGCAATAACTAAGGCCCGGTGTTGGCCGCTGCTCTGTGTTGGTTTTCCTTCGTTAACAGCAGCGCCGCCAACACTGGCCCTCGGCTTCACAATGTGCGTACggttaaaaaatttaaaataaaaagcagcGACCTCGGCTCTGTCTTGCACATTGCaaatgcatatacagtacacaaaaaCAAGTATTTCCAGGATAATTAGGTCTGTTTTCAGCGGAGGATACTATCGGAGGCCTTTATTTGGCTTGACTACAGCACAGGTTCGCTGTAAGGGGGAGTGAGCGAGTAGGGATCTCGACTCGTGAGCTTCGGGCTCACCGCAAAACTATTTGTGTTTAGCATCGATagctttgtttttatgttggttTTTTTGATCATCACCAAACAAAAGGCTTACGTCAGCATTCCCACGTTGCGTTTTTCTGTTCGCTACGATGGGAATTAACAAAGCACTACTTGCTGTGTACTTTCCCATCGACTCCTACACACAAGTGttactttttgatttttttttttaatgttttttccaTTAAGGCCGTATTCATCACCCCTAAACTGAATTACGTACAATGTTTCCTTGTAACTGCATCCATATTACTTCTCGGGAGTAGTCTGTATGTGCTTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65170 True 2234 lncRNA 0.40 3 11454589 11456874
TU65171 False 1323 lncRNA 0.41 3 11435044 11456874

Neighbor

gene id symbol gene type direction distance location
rapgef3 LOC103365870 coding upstream 52895 11352614 ~ 11382149 (+)
LOC120558497 NA coding upstream 106425 11317430 ~ 11328619 (+)
LOC120558407 NA coding upstream 623492 10758397 ~ 10811552 (+)
LOC120558406 NA coding upstream 687491 10593784 ~ 10747553 (+)
LOC120559192 NA coding upstream 851515 10574601 ~ 10583529 (+)
dazap2 dazap2 coding downstream 41998 11498872 ~ 11503554 (+)
si:ch211-210c8.6 LOC103365959,LOC103139179,LOC106936181,LOC105935261,LOC100690432,LOC102797068,LOC102213155 coding downstream 59770 11516644 ~ 11520131 (+)
LOC120558490 LOC102302598,LOC100690975 coding downstream 75325 11532199 ~ 11563315 (+)
cs cs coding downstream 107241 11564115 ~ 11579004 (+)
ankrd52a ankrd52 coding downstream 130004 11586878 ~ 11609087 (+)
G48763 NA non-coding upstream 204678 11230007 ~ 11230366 (+)
G48755 NA non-coding upstream 226410 11208287 ~ 11208634 (+)
G48680 NA non-coding upstream 474562 10907360 ~ 10960482 (+)
G48679 NA non-coding upstream 522972 10910143 ~ 10912072 (+)
G48670 NA non-coding upstream 535912 10855502 ~ 10899132 (+)
G48805 csrnp2 non-coding downstream 2468 11459342 ~ 11459749 (+)
G48806 csrnp2 non-coding downstream 4274 11461148 ~ 11461976 (+)
G48807 NA non-coding downstream 6399 11463273 ~ 11464079 (+)
G48856 NA non-coding downstream 137389 11594263 ~ 11594475 (+)
G48859 NA non-coding downstream 146533 11603407 ~ 11603702 (+)
G48765 NA other upstream 119052 11314662 ~ 11315992 (+)
G48752 NA other upstream 261390 11172595 ~ 11173654 (+)
G48640 NA other upstream 684616 10614031 ~ 10750428 (+)
agmat agmat,LOC102790280 other upstream 1283793 10139598 ~ 10151251 (+)
ubxn10 NA other upstream 1509963 9922600 ~ 9925081 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other downstream 627578 12084452 ~ 12090773 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other downstream 635905 12092779 ~ 12103899 (+)
nol4la LOC103354513,LOC100696587 other downstream 725335 12182209 ~ 12210409 (+)
trnae-cuc_14 NA other downstream 766693 12223567 ~ 12223638 (+)
LOC120559657 LOC102305201 other downstream 788771 12245645 ~ 12254060 (+)

Expression


Co-expression Network