G48805 (csrnp2)


Basic Information

Item Value
gene id G48805
gene name csrnp2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11459342 ~ 11459749 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65173
GGGCACACATTTCATTGAGCAGTGAAGACTCATTCCAgcctcagtaaaaaaaaactgcacagtGGCTCCCTTCTCTCTGCACGTGCACACAGACAAGCCAACAGGCCTTACCTGGCACTTAATCCCAGCCTGGCTGCAGCCGCAGTGGCGCGGGTCGCAGTACAAGCGGCAGTCGCAGCCGCATTCCTCCCGCGAGAGGCGGATGGTTCGGAGCTCGGCTTTCTCCCGCGCATCGATGCGTGCGATGCCGGACGCTCGCAGGAGGGCTCGGCGGCGCTTTGTGGGCAGCGGCTGAAGAAAGAAGCAGTCGTCCACCTCCACCTCGTCCACGTCCAGGTCCTCATCGGATACGTCCTCCAGTGTCAGCAGGTCTGCCTGAGCGCACTCCACCGTGCCGTTCCTTGTCAG

Function

symbol description
csrnp2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human CSRNP2 (cysteine and serine rich nuclear protein 2).

NR:

description
PREDICTED: cysteine/serine-rich nuclear protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65173 True 408 lncRNA 0.61 1 11459342 11459749

Neighbor

gene id symbol gene type direction distance location
rapgef3 LOC103365870 coding upstream 77193 11352614 ~ 11382149 (+)
LOC120558497 NA coding upstream 130723 11317430 ~ 11328619 (+)
LOC120558407 NA coding upstream 647790 10758397 ~ 10811552 (+)
LOC120558406 NA coding upstream 711789 10593784 ~ 10747553 (+)
LOC120559192 NA coding upstream 875813 10574601 ~ 10583529 (+)
dazap2 dazap2 coding downstream 39123 11498872 ~ 11503554 (+)
si:ch211-210c8.6 LOC103365959,LOC103139179,LOC106936181,LOC105935261,LOC100690432,LOC102797068,LOC102213155 coding downstream 56895 11516644 ~ 11520131 (+)
LOC120558490 LOC102302598,LOC100690975 coding downstream 72450 11532199 ~ 11563315 (+)
cs cs coding downstream 104366 11564115 ~ 11579004 (+)
ankrd52a ankrd52 coding downstream 127129 11586878 ~ 11609087 (+)
G48803 NA non-coding upstream 2468 11435044 ~ 11456874 (+)
G48804 NA non-coding upstream 20785 11438272 ~ 11438557 (+)
G48763 NA non-coding upstream 228976 11230007 ~ 11230366 (+)
G48755 NA non-coding upstream 250708 11208287 ~ 11208634 (+)
G48680 NA non-coding upstream 498860 10907360 ~ 10960482 (+)
G48806 csrnp2 non-coding downstream 1399 11461148 ~ 11461976 (+)
G48807 NA non-coding downstream 3524 11463273 ~ 11464079 (+)
G48856 NA non-coding downstream 134514 11594263 ~ 11594475 (+)
G48859 NA non-coding downstream 143658 11603407 ~ 11603702 (+)
G48860 NA non-coding downstream 143970 11603719 ~ 11603984 (+)
G48765 NA other upstream 143350 11314662 ~ 11315992 (+)
G48752 NA other upstream 285688 11172595 ~ 11173654 (+)
G48640 NA other upstream 708914 10614031 ~ 10750428 (+)
agmat agmat,LOC102790280 other upstream 1308091 10139598 ~ 10151251 (+)
ubxn10 NA other upstream 1534261 9922600 ~ 9925081 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other downstream 624703 12084452 ~ 12090773 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other downstream 633030 12092779 ~ 12103899 (+)
nol4la LOC103354513,LOC100696587 other downstream 722460 12182209 ~ 12210409 (+)
trnae-cuc_14 NA other downstream 763818 12223567 ~ 12223638 (+)
LOC120559657 LOC102305201 other downstream 785896 12245645 ~ 12254060 (+)

Expression


Co-expression Network