LOC120559701 (slc13a3,LOC103399527)


Basic Information

Item Value
gene id LOC120559701
gene name slc13a3,LOC103399527
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11860102 ~ 11862940 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65391
TGGAAAATGCTGGtcacacaacattgacatataatCACATTATAAAGTTGGTTTTCCAACACATGTTTGCTTATagttacacatccagcagttacagagcaacattatgaTTTATTTGAAGTCGGGATTCTGGCCATTGGATGAATGGTCTCCAGGTCTCCAAACAGACTCTCTAGGATGGCATTAGCAATAGGGAGCATCATGGCTGTGGTGGCGGTGTTGCTGAGCCACATGGACAGGAAGGACGAGTGAGGACCTTTAGGGCGATTCTGCGATGCAGGCCCCACTCCTCGATGGACGACGCCATCACAAGACCGCTGAGGAAGAGAAAATTGGTTTCCAGGAAGTACTGAGGACAGACTGTTTTGGATGGAAGAATTCCCAGTGTTGGGAAGAGGCAGACCGGAAGCATTGCCGTGACGGCCAGAGGAAGGGCCTCTGTGCACCAAAACATAGCCATCAGCACCACCACATAAAGACATTTTCCCTCCTAAAAGATAAGCAACATGTGGTCATTAATGTTTAGCCaactttaaaaagaagaaaaagatgtgacaggggaaaaaaaggaagaaatacAGTGActttgtcagagagagagaaattgcaTTCATGTGCAACTGTGTGCATAAGAGGCATGCTTCTGTATAGTTAAATACAATGCATAAGGAATAGTGTACAGTTTGTGGCATAAATATAATTGcagggggtggcagtagctcagtcagtagggagttagGGAGTtaggttgggaaccggagggttgctggttcaagtccccatacggaccaaagtatggtggtggattggtagctggagaggtgccagttcacctcctgggcactgccaaggtgctcttgagcaaggcaccgaacccccaactgcacagggcgcctttccatgggcagctccctcactctgacatctctccattagtgcacgtataggtactgagcatgtgtgtgtgtaattcaggccagtgtgtaatgtgtgtaataacaacagagtgaaaacattgtaatttccccttgtgggattaataaagtatacattacattacaaatcAATACAGGTGCTGGTTTAATGTAATATAAACataataaatgaatatattTTGTAGATTTAGGTTATTGAGATGGGGCTGCAGCTAACATAGTgtagtattttttattataagtAGGCCTATACTTCATAAttccactccactacatttaaaaaaggaaaatattgtacttttataTCTATTTGACACTTatagttacaaattactttttacataaaaacatgattGAAAAACATGATATGCTTTTTAGATATGATATGATGCAGTAGGCTACTAATTGAGTagtatacaaatac
>TU65392
TGGAAAATGCTGGtcacacaacattgacatataatCACATTATAAAGTTGGTTTTCCAACACATGTTTGCTTATagttacacatccagcagttacagagcaacattatgaTTTATTTGAAGTCGGGATTCTGGCCATTGGATGAATGGTCTCCAGGTCTCCAAACAGACTCTCTAGGATGGCATTAGCAATAGGGAGCATCATGGCTGTGGTGGCGGTGTTGCTGAGCCACATGGACAGGAAGGACGAGGTCAGCATCATTCCCAGTATAAGCCTAGGGAAATAATTCAATCTCAAATGAATGCCATTAATCATTATCATAGCTGCTGACTTGGAAGATGTTCTTTTTGGAATAAGGAGCACGCTACCTTAGAGGGTGAGGACCTTTAGGGCGATTCTGCGATGCAGGCCCCACTCCTCGATGGACGACGCCATCACAAGACCGCTGAGGAAGAGAAAATTGGTTTCCAGGAAGTACTGAGGACAGACTGTTTTGGATGGAAGAATTCCCAGTGTTGGGAAGAGGCAGACCGGAAGCATTGCCGTGACGGCCAGAGGAAGGGCCTCTGTGCACCAAAACATAGCCATCAGCACCACCACATAAAGACATTTTCCCTCCTAAAAGATAAGCAACATGTGGTCATTAATGTTTAGCCaactttaaaaagaagaaaaagatgtgacaggggaaaaaaaggaagaaatacAGTGActttgtcagagagagagaaattgcaTTCATGTGCAACTGTGTGCATAAGAGGCATGCTTCTGTATAGTTAAATACAATGCATAAGGAATAGTGTACAGTTTGTGGCATAAATATAATTGcagggggtggcagtagctcagtcagtagggagttagGGAGTtaggttgggaaccggagggttgctggttcaagtccccatacggaccaaagtatggtggtggattggtagctggagaggtgccagttcacctcctgggcactgccaaggtgctcttgagcaaggcaccgaacccccaactgcacagggcgcctttccatgggcagctccctcactctgacatctctccattagtgcacgtataggtactgagcatgtgtgtgtgtaattcaggccagtgtgtaatgtgtgtaataacaacagagtgaaaacattgtaatttccccttgtgggattaataaagtatacattacattacaaatcAATACAGGTGCTGGTTTAATGTAATATAAACataataaatgaatatattTTGTAGATTTAGGTTATTGAGATGGGGCTGCAGCTAACATAGTgtagtattttttattataagtAGGCCTATACTTCATAAttccactccactacatttaaaaaaggaaaatattgtacttttataTCTATTTGACACTTatagttacaaattactttttacataaaaacatgattGAAAAACATGATATGCTTTTTAGATATGATATGATGCAGTAGGCTACTAATTGAGTagtatacaaatac
>XR_005639351.1
TAGGTCCATCCAGCATCATTTATCACCTACCAATTGGATATTTGCTAACTTTGTATACCAGGACAGTGTATTGGAAAAACTGTACAAAGTTCACGACTTAGATTACATATTAAACGCTAGTAAAGATAAGGTTTTCTGTCATTTGGGGTCAGTGGAAAATGCTGGtcacacaacattgacatataatCACATTATAAAGTTGGTTTTCCAACACATGTTTGCTTATagttacacatccagcagttacagagcaacattatgaTTTATTTGAAGTCGGGATTCTGGCCATTGGATGAATGGTCTCCAGGTCTCCAAACAGACTCTCTAGGATGGCATTAGCAATAGGGAGCATCATGGCTGTGGTGGCGGTGTTGCTGAGCCACATGGACAGGAAGGACGAGTGAGGACCTTTAGGGCGATTCTGCGATGCAGGCCCCACTCCTCGATGGACGACGCCATCACAAGACCGCTGAGGAAGAGAAAATTGGTTTCCAGGAAGTACTGAGGACAGACTGTTTTGGATGGAAGAATTCCCAGT

Function

symbol description
slc13a3 Predicted to enable citrate transmembrane transporter activity; sodium:dicarboxylate symporter activity; and succinate transmembrane transporter activity. Predicted to be involved in anion transmembrane transport and citrate transport. Predicted to act upstream of or within sodium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; hatching gland; head; kidney; and periocular mesenchyme. Orthologous to human SLC13A3 (solute carrier family 13 member 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65391 False 1359 lncRNA 0.42 3 11860254 11862940
TU65392 True 1486 lncRNA 0.42 3 11860254 11862940
XR_005639351.1 False 538 lncRNA 0.44 3 11860102 11861967

Neighbor

gene id symbol gene type direction distance location
LOC120559303 mmp19,LOC101481755,LOC102777654 coding upstream 43548 11813252 ~ 11816554 (+)
pym1 pym1,LOC102777374 coding upstream 48291 11807712 ~ 11811811 (+)
pan2 pan2 coding upstream 82267 11760824 ~ 11777835 (+)
nemp1 LOC102776021,LOC100691505,LOC106916931,LOC103139126,LOC106959146,LOC102307926,LOC102208298 coding upstream 114360 11737286 ~ 11745742 (+)
letmd1 NA coding upstream 147415 11706243 ~ 11712687 (+)
cebpb cebpb,LOC107391299 coding downstream 106599 11969539 ~ 11971359 (+)
klhl12 klhl12,LOC102781379 coding downstream 117844 11980784 ~ 12009924 (+)
LOC120559247 NA coding downstream 145767 12008707 ~ 12017567 (+)
tuba5 LOC103354413,LOC100695265,LOC101484757,LOC102298344 coding downstream 154724 12017664 ~ 12023947 (+)
kdm5bb LOC103354421 coding downstream 180155 12043095 ~ 12063263 (+)
G48876 NA non-coding upstream 106865 11752998 ~ 11753237 (+)
LOC120559500 NA non-coding upstream 139185 11712804 ~ 11720917 (+)
G48854 NA non-coding upstream 160146 11699026 ~ 11699956 (+)
G48860 NA non-coding upstream 256118 11603719 ~ 11603984 (+)
G48859 NA non-coding upstream 256400 11603407 ~ 11603702 (+)
G48980 scrt2,LOC107391295,LOC102228875,LOC108249568,LOC106536404 non-coding downstream 19023 11881963 ~ 11903479 (+)
G48986 NA non-coding downstream 44839 11907779 ~ 11907872 (+)
G48978 NA non-coding downstream 90234 11953174 ~ 11982735 (+)
G49086 NA non-coding downstream 279202 12142142 ~ 12142527 (+)
G49094 NA non-coding downstream 283264 12146204 ~ 12146526 (+)
G48765 NA other upstream 544110 11314662 ~ 11315992 (+)
G48752 NA other upstream 686448 11172595 ~ 11173654 (+)
G48640 NA other upstream 1109674 10614031 ~ 10750428 (+)
agmat agmat,LOC102790280 other upstream 1708851 10139598 ~ 10151251 (+)
ubxn10 NA other upstream 1935021 9922600 ~ 9925081 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other downstream 221512 12084452 ~ 12090773 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other downstream 229839 12092779 ~ 12103899 (+)
nol4la LOC103354513,LOC100696587 other downstream 319269 12182209 ~ 12210409 (+)
trnae-cuc_14 NA other downstream 360627 12223567 ~ 12223638 (+)
LOC120559657 LOC102305201 other downstream 382705 12245645 ~ 12254060 (+)

Expression


Co-expression Network