G48978


Basic Information

Item Value
gene id G48978
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11953174 ~ 11982735 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65403
ATGAAAAGCATGAATTAAGTTTTATGAAAGAAGTGGCGAAAGTTAAACAAATTTTCACATGGAGTAGCAAATACAGTTTCACAAGTCAGATGAACTCCTCTGACGTTACACAGGACCAAAAGAGGTAGCTGATTTCACTTCTATATTGTCAAGCACGGTTTAAAACTGGGACTTCTGCAGACCTACAGTAGACTTGTATACTATGCTACTATGCATATTATAATCAGATATAGTGGTATAGATACACAATGTTCACTTTGGACAATTCTTacatagaagaaaaaaaaaaagccatgtgtGACAAAAGGTGATCACTTCCAGGCACCTTGCTGAGCTGCAGTCATGCATTTACAACAGGACTGCGTGAGAACATTTATTCTGTGCAATCACACACGGAGGAAAATATTTCATTAGACATCTGGCCACATGACAATACATACTTCACATTATTTGCCAAGTTGAATGCATTTGGGTTTTCTTTATTTGTACACCTTGAAGATTATCTAATAACTAACAGTATGTTTAGTGAACTATGTGCGTTAATGTTAAGTGGCCGTtttttaatgttacaaaaagGCAACACACAGAGGAGGTACACTCAATAAGATTATTTATGTTATTGTAcaatctgcatttttttttttttaaacaaataataaaaaaaaaaagattagtaACAGTACAGTATTCGAATGATCGTATCTGGTGTGGACTGAGGACTTGTCACATTGAGTCCACCCAGAGCTCCAGTgatgggagagggaggggagggccTGGAATGACTCATGAACGCTAATAAGTGTGTGTATAAagatatatgtgtatgtagatTTGCATTTGTCCGttattgtgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65403 True 910 lncRNA 0.37 2 11953174 11982735

Neighbor

gene id symbol gene type direction distance location
LOC120559303 mmp19,LOC101481755,LOC102777654 coding upstream 136620 11813252 ~ 11816554 (+)
pym1 pym1,LOC102777374 coding upstream 141363 11807712 ~ 11811811 (+)
pan2 pan2 coding upstream 175339 11760824 ~ 11777835 (+)
nemp1 LOC102776021,LOC100691505,LOC106916931,LOC103139126,LOC106959146,LOC102307926,LOC102208298 coding upstream 207432 11737286 ~ 11745742 (+)
letmd1 NA coding upstream 240487 11706243 ~ 11712687 (+)
LOC120559247 NA coding downstream 25972 12008707 ~ 12017567 (+)
tuba5 LOC103354413,LOC100695265,LOC101484757,LOC102298344 coding downstream 34929 12017664 ~ 12023947 (+)
kdm5bb LOC103354421 coding downstream 60360 12043095 ~ 12063263 (+)
rap1aa LOC106952760,LOC107389464,LOC101074250,LOC103139095,LOC100690250,LOC107090729,LOC105935262,LOC102226994 coding downstream 85678 12068413 ~ 12082842 (+)
LOC120558724 NA coding downstream 147101 12129836 ~ 12141802 (+)
G48986 NA non-coding upstream 45302 11907779 ~ 11907872 (+)
G48980 scrt2,LOC107391295,LOC102228875,LOC108249568,LOC106536404 non-coding upstream 49695 11881963 ~ 11903479 (+)
LOC120559701 slc13a3,LOC103399527 non-coding upstream 90234 11860102 ~ 11862940 (+)
G48876 NA non-coding upstream 199937 11752998 ~ 11753237 (+)
LOC120559500 NA non-coding upstream 232257 11712804 ~ 11720917 (+)
G49086 NA non-coding downstream 159407 12142142 ~ 12142527 (+)
G49094 NA non-coding downstream 163469 12146204 ~ 12146526 (+)
G49105 NA non-coding downstream 229009 12211744 ~ 12212515 (+)
G49106 NA non-coding downstream 237278 12220013 ~ 12223054 (+)
G49157 NA non-coding downstream 381358 12364093 ~ 12364441 (+)
G48765 NA other upstream 637182 11314662 ~ 11315992 (+)
G48752 NA other upstream 779520 11172595 ~ 11173654 (+)
G48640 NA other upstream 1202746 10614031 ~ 10750428 (+)
agmat agmat,LOC102790280 other upstream 1801923 10139598 ~ 10151251 (+)
ubxn10 NA other upstream 2028093 9922600 ~ 9925081 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other downstream 101717 12084452 ~ 12090773 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other downstream 110044 12092779 ~ 12103899 (+)
nol4la LOC103354513,LOC100696587 other downstream 199474 12182209 ~ 12210409 (+)
trnae-cuc_14 NA other downstream 240832 12223567 ~ 12223638 (+)
LOC120559657 LOC102305201 other downstream 262910 12245645 ~ 12254060 (+)

Expression


Co-expression Network