G48980 (scrt2,LOC107391295,LOC102228875,LOC108249568,LOC106536404)


Basic Information

Item Value
gene id G48980
gene name scrt2,LOC107391295,LOC102228875,LOC108249568,LOC106536404
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11881963 ~ 11903479 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65407
CATATATAATTGTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtctctgtgtgtatgtgcacacGTGCGtacatctttgtgtgtgtgtgtgtgtgtgtgtgtgtatttgcatacATGTccgtgtgagtgtatgtgtgtttacatgtgccCACGTCCGTGCGAGCACATGTTGCTTAATTGTGTACAACTATCATCTACAGTCTCTATTTGGGGGAAGGTTGTTTGATTGTATGTTTCTGTGGACGATTAGCTACTGTGCAGGGAAAAAAATCCAGCATCTTTTGAAATTGTCTTTGCCATAATCATTAGAGTTTCTTCACGTAATCTCAGTGAAAATATTGCTTTctaaaaaaagggaagaaaaaaggCATGGAGGGCAGAGTGAACAGGGTTATTGGTTGTGAACCTACAACAGGGGTTCAAAATGTAGCTTCTTCCTCGTGGTTAGTTTTCTGATCCAGAGTCGTCTTCGTCCGCAGAGCCCTTGAAGCAAGCTGACTCATAGTGCTTGTTCAGGTAGGACTTGAGAGCGAAGGTCTTATTGCAGCGCTTGCATCTGTAGTGCTTGAAGGCagagtgtgtttgcatgtgggCGCGGAGGTTTGAACGGTCAGCAAAGGCTTTGCCACAGTGTGCGCAGGCAAAGGGCTTCTCCCCCGTGTGTGAGCGCATGTGGCCTTGAAGGAGCCACGGCCGACTGAAGGCCTTGCTGCACACGTCGCACTTGTGCTTGAGGTCGTGGGTGAGGATGTGCATGGCCAACGCTGGCATGGACACGTACACTTTGTTACACGTGGGACACTTGCGGGCCATCTTGCTGTCGAGGCTGCGGTGCGTCTGCTTGTGTCTGCTGAGGTTGGAGGAGGTGGCGTAGGTCTTGCCGCACTCGTTGCAGGAGTGGCGTGCCGTGCCAGCTCCCTTCTCCTGAGCCCCACCGTTGGCACTGCTGCTTCTCGAGCCCCCTCCGCGACTCTCGGTGTCTCCCTTTCGCCTTGAGCGCCCGTCAGAGATGAAGAAGGCATCCATGGTGTAACCCTCGGCCAGGGCCTCCGACTCACCGCTGTAGAAGCCGCTGGCTGTCATGCCAGACTGGGGGCTGTCGGGGTGCTTCAGGTCGGGGTCACAGTACTCCTCTCCGCTGCTCACCTGGGTGTAGAGGGGATCTGACACCGGCGAGGCCAGCTTCAGCTCCATTTTCTTCTCCCCCTGGTACACAGATGGCGTGATGTAATCCTGGATGTAGC

Function

symbol description
scrt2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within regulation of DNA damage response, signal transduction by p53 class mediator; regulation of neural precursor cell proliferation; and regulation of neuron apoptotic process. Is expressed in nervous system; spinal cord neural keel; spinal cord neural tube; and trigeminal placode. Orthologous to human SCRT2 (scratch family transcriptional repressor 2).

NR:

description
PREDICTED: transcriptional repressor scratch 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65407 True 1249 lncRNA 0.53 2 11881963 11903479

Neighbor

gene id symbol gene type direction distance location
LOC120559303 mmp19,LOC101481755,LOC102777654 coding upstream 65409 11813252 ~ 11816554 (+)
pym1 pym1,LOC102777374 coding upstream 70152 11807712 ~ 11811811 (+)
pan2 pan2 coding upstream 104128 11760824 ~ 11777835 (+)
nemp1 LOC102776021,LOC100691505,LOC106916931,LOC103139126,LOC106959146,LOC102307926,LOC102208298 coding upstream 136221 11737286 ~ 11745742 (+)
letmd1 NA coding upstream 169276 11706243 ~ 11712687 (+)
cebpb cebpb,LOC107391299 coding downstream 66060 11969539 ~ 11971359 (+)
klhl12 klhl12,LOC102781379 coding downstream 77305 11980784 ~ 12009924 (+)
LOC120559247 NA coding downstream 105228 12008707 ~ 12017567 (+)
tuba5 LOC103354413,LOC100695265,LOC101484757,LOC102298344 coding downstream 114185 12017664 ~ 12023947 (+)
kdm5bb LOC103354421 coding downstream 139616 12043095 ~ 12063263 (+)
LOC120559701 slc13a3,LOC103399527 non-coding upstream 19023 11860102 ~ 11862940 (+)
G48876 NA non-coding upstream 128726 11752998 ~ 11753237 (+)
LOC120559500 NA non-coding upstream 161046 11712804 ~ 11720917 (+)
G48854 NA non-coding upstream 182007 11699026 ~ 11699956 (+)
G48860 NA non-coding upstream 277979 11603719 ~ 11603984 (+)
G48986 NA non-coding downstream 4300 11907779 ~ 11907872 (+)
G48978 NA non-coding downstream 49695 11953174 ~ 11982735 (+)
G49086 NA non-coding downstream 238663 12142142 ~ 12142527 (+)
G49094 NA non-coding downstream 242725 12146204 ~ 12146526 (+)
G49105 NA non-coding downstream 308265 12211744 ~ 12212515 (+)
G48765 NA other upstream 565971 11314662 ~ 11315992 (+)
G48752 NA other upstream 708309 11172595 ~ 11173654 (+)
G48640 NA other upstream 1131535 10614031 ~ 10750428 (+)
agmat agmat,LOC102790280 other upstream 1730712 10139598 ~ 10151251 (+)
ubxn10 NA other upstream 1956882 9922600 ~ 9925081 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other downstream 180973 12084452 ~ 12090773 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other downstream 189300 12092779 ~ 12103899 (+)
nol4la LOC103354513,LOC100696587 other downstream 278730 12182209 ~ 12210409 (+)
trnae-cuc_14 NA other downstream 320088 12223567 ~ 12223638 (+)
LOC120559657 LOC102305201 other downstream 342166 12245645 ~ 12254060 (+)

Expression


Co-expression Network