LOC120559364 (cables2,LOC103354454,LOC100695798)


Basic Information

Item Value
gene id LOC120559364
gene name cables2,LOC103354454,LOC100695798
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12092779 ~ 12103899 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65506
CGCGCACGGAGGGGCGAGGCTAATGCTTTGCGTTTAGTTGCCTTTGCGTTCAACTGCCACATTTCAAACTAGAATGGCGACCGCTGTTTGCGGTTTGCAGTCCACCGGCAGTAACGGTAAGTCAgttaaaacacacagagagcaccgGAGGAAAACGAAAGACTCCAGGAGGAGACAGGCGGCTTTGTTGTTCCTTAATAATATCTCACTCGACGGACGACCCCAGTGTCAGCCTAGCGATGAAAACGACGACCAAAAAGCCGCCGAGGAGCAACGACTCAGGGACAGAGACGGCGGCGCAACGGTCGTGCCCCTGCCGTCGGCATGTCGCCAAGAACCGGTCGCCCAGGTGACAGAACCCGCGGCGTCAGGTAGTGGCTCGTCCTCCAGTTTTCCAGGGGTAGTCAGTCCTACCCGACCTTTGGCAATATCTCCTGGACCTGCTGGGGCAAACGAGGTATTTTTGGAGGGTGGCACTGCGGCCGTTACGCTAACCCCGGACACCCCTATGTCTCCTGTTCCCTCCGGACACCAGCCCTGCTCCCGTGTCAGGTCAACGCCCGCCGCTCTGAGCCCGGTCCCGACCGGTAATTCTATGGATTCACGGCAGAGGTTAAGGAATGTCTCTGGTTCTCCTGGACCTAAAGTGCCAAAGAAAGTCCACTTCATCAAAAGTATGCGGCAGTACGATACCAGGGGATCTAGTGATCCTAAGCTGGAGACTCAGAGACAGAGGCTGTCTTCTGTGGTGGCTGCTGACCTGCTTCCTTCCCTGGAAGGTGTGGAGCTTGCAGACTATGGAAAGGTAAAT
>XM_039801027.1
TTTGCGTTCAACTGCCACATTTCAAACTAGAATGGCGACCGCTGTTTGCGGTTTGCAGTCCACCGGCAGTAACGGTAAGTCAgttaaaacacacagagagcaccgGAGGAAAACGAAAGACTCCAGGAGGAGACAGGCGGCTTTGTTGTTCCTTAATAATATCTCACTCGACGGACGACCCCAGTGTCAGCCTAGCGATGAAAACGACGACCAAAAAGCCGCCGAGGAGCAACGACTCAGGGACAGAGACGGCGGCGCAACGGTCGTGCCCCTGCCGTCGGCATGTCGCCAAGAACCGGTCGCCCAGGTGACAGAACCCGCGGCGTCAGGTAGTGGCTCGTCCTCCAGTTTTCCAGGGGTAGTCAGTCCTACCCGACCTTTGGCAATATCTCCTGGACCTGCTGGGGCAAACGAGGTATTTTTGGAGGGTGGCACTGCGGCCGTTACGCTAACCCCGGACACCCCTATGTCTCCTGTTCCCTCCGGACACCAGCCCTGCTCCCGTGTCAGGTCAACGCCCGCCGCTCTGAGCCCGGTCCCGACCGGTAATTCTATGGATTCACGGCAGAGGTTAAGGAATGTCTCTGGTTCTCCTGGACCTAAAGTGCCAAAGAAAGTCCACTTCATCAAAAGTATGCGGCAGTACGATACCAGGGGATCTAGGATCGTGCTGATTTGTGCCAAGCGGTCGCTATATGCTGCTTTCTCAGTGCTGCCCTATGGAGAGAGGGCTCACCTCAGTGATCCTAAGCTGGAGACTCAGAGACAGAGGCTGTCTTCTGTGGTGGCTGCTGACCTGCTTCCTTCCCTGGAAGGTGTGGAGCTTGCAGACTATGGAAAGGTAAATGATGTCTGTCTCCTTTATCCGACCAATGCCTTGGTGAGGCAGAAGAGTGGCGGCGCTCCAGAGAACGGTACGGCTCTCACCCCTCAGTCCCGTTTCCGTGGCAACGGGCAGAGGAACTTTACCCCGGCTCGTGTGAACAGCAGCGTGGCACAGGACCAATGTATAGAGGAGGTGGTAGAGTACGATCCTAACCTGCTCAGTGACCCCCAGTGGCCCTGTGGGAGACATAAGAGGGTTCTGATATTTGCATCATACGTGACGACTGTCGTTGAGTACGTGAAACCATCTGATCTGAAGAAGGACATGAATGAGACTTTCAAGGAGAAGTTTCCTCACATCAAGCTAACTTTGAGCAAGATAAGAAGCCTGAAGAGGGAGATGGGGGCCATGAGCGAAGACTGCGGTCTACAGCCGGTCACCATAGCGATGGCTTTTGTTTACTTTGAGAAGCTGGTGCTGAAGGGACGCCTCAACAAGCACAACAGGAAGCTGGTGGCGGCGGCGTGCGTGCTGCTGGCAGCAAAGATCAGCAGCGATCTGCGGAAGCCAGAAGTCAAACAACTCATCGACAAGCTGGAAGAGCGTTTCCGTATCAACAGACGGGAGTTGATTCCTCTGGAGTTCCCGGTGCTGGTTGCCTTGGAGATGGGACTTTACCTCCCCGAGAGCAAAGTCATGCCGCACTACCGCAGGCTGGTGCAGCAGGGTTAGACTGACATTTTCTGGTTTCATTAATAACATCAGCAAGTGGGAGTGTGGTAAGGTAAAGGACTGTGTGTTTATACACTGTGGTATTGGAAACAAATAATTCTGGTAGTATTTATTTTCAGTCAGTTGTGACTTAAGTCGCTCACTGTATATTAAGAATAACTAGTTTACACTCCCATATTTTAAGACTTAATggcatgtgtgtctctctgaatgtgtttttgtaCGTGTGACGTTCTGATGTCGATGCAGTCATGAACTCTATGTTAGAGATGTTCAATGAGCACGTtaattgtgcttttattttggttttctgTGACCGATTTCTTTTGGTACGTCCTAGTATTCTATTTAAATGAAACCTGCACTGTGATGTTTGTGGAAGACGTTTCTCCTGCACCTTTCTTACTACTATACACAGTCTGTATTCTATTTATTATGAATGACAAAGAACCATACTGTTGATTTTTGTAAATGCCTTTTTAAACCCACTGTGACATTGAAGTGTTTTTAGCCATTAGACAAATACATGATACTCtagattggtggaaaatgtgatttttagATCAGATTAGAGAAGGATGGAAGTGACCTTTCTAATTTAGGTTCTTTGTTTCtctccaaaaaataaaataatccagccacatatatatatttaacttgtgaatagaaagaaaatattggATCAGATTCTTGTGGCAGCTGTGTGTCCAGACAGAAACAGGATTGTGATGGCATATTATTTATagtaaatgtgttttgttttttatcttttatgtcGTTAACCGgggatatgtttttatttaaaaaacaaaacaaaacgctgcACTGGAATTTATTCCTAGTCAGGCTAGTTGTTGTCTTTTTCAGTTCTCAGGaatttttctttctcttatcTTTCAGTGGCTTATAAAATCTAATCCAAAGAGATATTTAAAAGTTCTTACGTAGCTATCACCTGTAGTCCCATTGTAAGTCAAAGGAAGGTAACCGATTGTGCTTTCACAGATAACAAGTACCAGACAGTATTAACCTGACTGTAGTATTTGTTGTGTAGTAACTCTTCTGATTTAGGCGTACaaatatggagagaaaaaagtgcCTGAAACTACAGTGGCAGCGAAATGGTTAACCATCTTGTCATAAGTGATATTTAATGTTGACTTTTCTGAGTCTTGCTGCTGTAGAGATTTTTTAAATGTCGAAATTGTTCTTGTCTGGGAAACGTaataaaacagtttattgtctgCAGTTATGACCAATGTATTATGATAAAAATCCACTTGTATTGTTGATGTCAAATGGGtaaatattcagttttttttttcatattgtaaaatgaatgtttttcAAATATATGTTCAGACACTGAAaagtcatgttttgtttttttgactcAACACAATTTATATGACGCCGTTTCATCTCCTCAGAGCGGTATCAGTAAGTGAAGTGAAGCAAGTGAAGTAATCGGTCACAAAACTGGAGAATAAACATGACAGTAGAGCGTG

Function

symbol description
cables2 Predicted to be involved in cell division and regulation of cell cycle.

NR:

description
PREDICTED: CDK5 and ABL1 enzyme substrate 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65506 False 811 TUCP 0.56 3 12092779 12096837
XM_039801027.1 True 3066 mRNA 0.45 9 12092821 12103899

Neighbor

gene id symbol gene type direction distance location
rap1aa LOC106952760,LOC107389464,LOC101074250,LOC103139095,LOC100690250,LOC107090729,LOC105935262,LOC102226994 coding upstream 9937 12068413 ~ 12082842 (+)
kdm5bb LOC103354421 coding upstream 29516 12043095 ~ 12063263 (+)
tuba5 LOC103354413,LOC100695265,LOC101484757,LOC102298344 coding upstream 68832 12017664 ~ 12023947 (+)
LOC120559247 NA coding upstream 75212 12008707 ~ 12017567 (+)
klhl12 klhl12,LOC102781379 coding upstream 82855 11980784 ~ 12009924 (+)
LOC120558724 NA coding downstream 25937 12129836 ~ 12141802 (+)
LOC120559656 gid8,LOC100691864,LOC107090700,LOC102225438,LOC105935248,LOC101169608,LOC101073127,LOC108231957,LOC103139083 coding downstream 137147 12241046 ~ 12243801 (+)
emilin3a NA coding downstream 239420 12343319 ~ 12347248 (+)
opn7d LOC104933009,LOC103354604 coding downstream 247734 12351633 ~ 12363904 (+)
rad21l1 NA coding downstream 264897 12368796 ~ 12379697 (+)
G48978 NA non-coding upstream 110044 11953174 ~ 11982735 (+)
G48986 NA non-coding upstream 184907 11907779 ~ 11907872 (+)
G48980 scrt2,LOC107391295,LOC102228875,LOC108249568,LOC106536404 non-coding upstream 189300 11881963 ~ 11903479 (+)
LOC120559701 slc13a3,LOC103399527 non-coding upstream 229839 11860102 ~ 11862940 (+)
G48876 NA non-coding upstream 339542 11752998 ~ 11753237 (+)
G49086 NA non-coding downstream 38243 12142142 ~ 12142527 (+)
G49094 NA non-coding downstream 42305 12146204 ~ 12146526 (+)
G49105 NA non-coding downstream 107845 12211744 ~ 12212515 (+)
G49106 NA non-coding downstream 116114 12220013 ~ 12223054 (+)
G49157 NA non-coding downstream 260194 12364093 ~ 12364441 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other upstream 2006 12084452 ~ 12090773 (+)
G48765 NA other upstream 776787 11314662 ~ 11315992 (+)
G48752 NA other upstream 919125 11172595 ~ 11173654 (+)
G48640 NA other upstream 1342351 10614031 ~ 10750428 (+)
agmat agmat,LOC102790280 other upstream 1941528 10139598 ~ 10151251 (+)
nol4la LOC103354513,LOC100696587 other downstream 78310 12182209 ~ 12210409 (+)
trnae-cuc_14 NA other downstream 119668 12223567 ~ 12223638 (+)
LOC120559657 LOC102305201 other downstream 141746 12245645 ~ 12254060 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other downstream 179528 12283427 ~ 12303403 (+)
G49209 NA other downstream 348636 12452535 ~ 12458439 (+)

Expression


Co-expression Network