G49086


Basic Information

Item Value
gene id G49086
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12142142 ~ 12142527 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65536
ttttatgaacatcatgtctttttttaaatattagtttttctaaaattatacttccCAATATATCGTCTTACGCACAGtattgaaatatattgcaatgtattgaaTTGTGACCCATGTATTGTGATatgtatcgtatcgccagattcttgccaatacacagccctaaatGTAATATTCATAAATAATGATGAATTACTTCAAAGTGTGTTTACAGAAATACAATGAACACGATTGCATATGAACATGAAAGTCTTAAAAACTTTAAGGGGGAAATACATTTCCTGTTGTACAACATATTTTTGAAAACATATTGTAAATCTGCAGTTATATTGAAAATAAGTTTGAGCCAAGGCTGGACTACCATTCAGGCAAAGCGGACAACCACC

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU65536 True 386 lncRNA 0.31 1 12142142 12142527

Neighbor

gene id symbol gene type direction distance location
LOC120558724 NA coding upstream 340 12129836 ~ 12141802 (+)
rap1aa LOC106952760,LOC107389464,LOC101074250,LOC103139095,LOC100690250,LOC107090729,LOC105935262,LOC102226994 coding upstream 59300 12068413 ~ 12082842 (+)
kdm5bb LOC103354421 coding upstream 78879 12043095 ~ 12063263 (+)
tuba5 LOC103354413,LOC100695265,LOC101484757,LOC102298344 coding upstream 118195 12017664 ~ 12023947 (+)
LOC120559247 NA coding upstream 124575 12008707 ~ 12017567 (+)
LOC120559656 gid8,LOC100691864,LOC107090700,LOC102225438,LOC105935248,LOC101169608,LOC101073127,LOC108231957,LOC103139083 coding downstream 98519 12241046 ~ 12243801 (+)
emilin3a NA coding downstream 200792 12343319 ~ 12347248 (+)
opn7d LOC104933009,LOC103354604 coding downstream 209106 12351633 ~ 12363904 (+)
rad21l1 NA coding downstream 226269 12368796 ~ 12379697 (+)
LOC120558417 NA coding downstream 238505 12381032 ~ 12386273 (+)
G48978 NA non-coding upstream 159407 11953174 ~ 11982735 (+)
G48986 NA non-coding upstream 234270 11907779 ~ 11907872 (+)
G48980 scrt2,LOC107391295,LOC102228875,LOC108249568,LOC106536404 non-coding upstream 238663 11881963 ~ 11903479 (+)
LOC120559701 slc13a3,LOC103399527 non-coding upstream 279202 11860102 ~ 11862940 (+)
G48876 NA non-coding upstream 388905 11752998 ~ 11753237 (+)
G49094 NA non-coding downstream 3677 12146204 ~ 12146526 (+)
G49105 NA non-coding downstream 69217 12211744 ~ 12212515 (+)
G49106 NA non-coding downstream 77486 12220013 ~ 12223054 (+)
G49157 NA non-coding downstream 221566 12364093 ~ 12364441 (+)
G49221 NA non-coding downstream 327923 12470450 ~ 12472272 (+)
LOC120559364 cables2,LOC103354454,LOC100695798 other upstream 38243 12092779 ~ 12103899 (+)
xkr5l xkr7,LOC103354446,LOC100690518 other upstream 51369 12084452 ~ 12090773 (+)
G48765 NA other upstream 826150 11314662 ~ 11315992 (+)
G48752 NA other upstream 968488 11172595 ~ 11173654 (+)
G48640 NA other upstream 1391714 10614031 ~ 10750428 (+)
nol4la LOC103354513,LOC100696587 other downstream 39682 12182209 ~ 12210409 (+)
trnae-cuc_14 NA other downstream 81040 12223567 ~ 12223638 (+)
LOC120559657 LOC102305201 other downstream 103118 12245645 ~ 12254060 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other downstream 140900 12283427 ~ 12303403 (+)
G49209 NA other downstream 310008 12452535 ~ 12458439 (+)

Expression


Co-expression Network