G49221


Basic Information

Item Value
gene id G49221
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12470450 ~ 12472272 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU65700
TCTGCACTGCCTTTATCTAAGAAGCCCTGGTTGATTGGTGGCATCCTCATGCTGCCGAAGGTCCTGGTCTGACCGGGGTACCAGCCAGGTGCCCTGCTCCCTGCAGGGAGGCTGGCAGAGCCGTCGCTCCACAGTGGCTGGCTGTTGCCAGTGGCTTCGTCCACAAGGATCATAGGGCTGTAGATGAGTTTGCCTCTGCGTCCCGCGGGGCCTATTATTCCTGGAAGAGTAGCGGTGCCAGCTGATGTGGTGTTCACCCAGGAGGCAGATGTCATCGAGGACACACTGCTGGGCCGGGCGTCCAGGCTGGCCTGGGTCTGTAGACGGGATCTGTATGGCGATGTGTTTCCACGGTAGCTCCCTGGGATGGGGAGGTCATCCCCATTGGTCTGTGGCCTCAGACACTGTAAGTTAAAGGACGGTGTACGACCTCTTGGTATGGGAGGAAGCAGTCGTCTCCTGAAATGTGTGCCATTCTCATTTCCATTGTAGCCATTCCCAGTGTAGCCACCGAAAGTGCTGCCATTTTCCATGCCGTTTATTGTACTTCCATTCCCATTGATGCTAATGATACTGCCGTTGCTGTTGTCTGAGTATCCATTCCCATTATATCCATTTGTGGCATAGGGAATGGGGCTTTCAATAACACTCCCATTCATGTTGGTGTCATTATAACCGTTATCAAAGCTGTTGGCATGAGTATCATAGTGTATCCCCCCAATGCTGTCGGCTCTTTCCAGGCTCTGTCCATGGTAGCCTGCCTCAG

Function

NR:

description
Transposable element Tc3 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65700 True 766 lncRNA 0.54 3 12470450 12472272

Neighbor

gene id symbol gene type direction distance location
LOC120558417 NA coding upstream 84177 12381032 ~ 12386273 (+)
rad21l1 NA coding upstream 90753 12368796 ~ 12379697 (+)
opn7d LOC104933009,LOC103354604 coding upstream 106546 12351633 ~ 12363904 (+)
emilin3a NA coding upstream 123202 12343319 ~ 12347248 (+)
LOC120559656 gid8,LOC100691864,LOC107090700,LOC102225438,LOC105935248,LOC101169608,LOC101073127,LOC108231957,LOC103139083 coding upstream 226649 12241046 ~ 12243801 (+)
pqbp1 pqbp1 coding downstream 27097 12499369 ~ 12504342 (+)
LOC120558783 LOC103354697 coding downstream 40982 12513254 ~ 12556372 (+)
iqsec2b iqsec2,LOC102793072,LOC103355372,LOC101076483 coding downstream 89539 12561811 ~ 12587368 (+)
kdm5c kdm5c coding downstream 118635 12590907 ~ 12611168 (+)
LOC120559891 NA coding downstream 174264 12646536 ~ 12650775 (+)
G49157 NA non-coding upstream 106009 12364093 ~ 12364441 (+)
G49106 NA non-coding upstream 247396 12220013 ~ 12223054 (+)
G49105 NA non-coding upstream 257935 12211744 ~ 12212515 (+)
G49094 NA non-coding upstream 323924 12146204 ~ 12146526 (+)
G49086 NA non-coding upstream 327923 12142142 ~ 12142527 (+)
G49223 NA non-coding downstream 1815 12474087 ~ 12476025 (+)
G49230 NA non-coding downstream 37770 12510042 ~ 12511578 (+)
G49241 LOC101072313 non-coding downstream 188155 12660427 ~ 12661371 (+)
G49301 gpr173,LOC107086794,LOC102204197,LOC101466594,LOC108231911 non-coding downstream 202070 12674342 ~ 12677678 (+)
LOC120559802 NA non-coding downstream 254328 12726600 ~ 12732417 (+)
G49209 NA other upstream 12011 12452535 ~ 12458439 (+)
si:dkey-70p6.1 LOC100692404,LOC101477341 other upstream 167047 12283427 ~ 12303403 (+)
LOC120559657 LOC102305201 other upstream 216390 12245645 ~ 12254060 (+)
trnae-cuc_14 NA other upstream 246812 12223567 ~ 12223638 (+)
nol4la LOC103354513,LOC100696587 other upstream 260041 12182209 ~ 12210409 (+)
LOC120558314 porcn other downstream 180112 12652384 ~ 12658308 (+)
LOC120559236 LOC103354867 other downstream 322671 12794943 ~ 12844434 (+)
LOC120559134 dvl1 other downstream 388449 12860721 ~ 12886224 (+)
G49538 lmod3 other downstream 1060118 13532390 ~ 13534922 (+)
LOC120558697 LOC103355228,LOC101470284,LOC102288766,LOC101062828,LOC100700879,LOC102197182,LOC102790759 other downstream 1186460 13658732 ~ 13724990 (+)

Expression


Co-expression Network